BP919198 |
Clone id |
YMU001_000122_D03 |
Library |
YMU01 |
Length |
439 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000122_D03. |
Accession |
BP919198 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CATAACGCATAGAGCATTTTGCGATGCCCTGGCGGAGGAGAGCGCACTCAGAGTGCAGAG CCAAATTACGGGGGGCCACTTAGGAGGAGATCACCACCACTTGCCCAGCACCCTCTCTAG CGCAGTGGCAGCGCAGCTCGCACAGGTTAGCGGTGCCTCTGCATATGGCGGCATTCTTGG CGGCGCAGCCAACTCTGGCCTGCCCTCCAAAGGAAGCAGCTTGCTTGATCATATGTCCCC TTTTGACAACCCTCTTATGAATGCAGCCTCCTCTTCATCAGCTGGCCGTGCTAATAGGCT GCCCCTTTGGCTCTCTGCAGCAGCTGCTGCTGGTGACCACCATCAACTCCTCTCTGTTAG CCCTAACCCCAATAATATCCCCTTCCATCCCTCCTTTTTGAGCTCCTTTCAGACCAATGC CTCCTCTGTCAACAGTCTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FFH3 |
Definition |
sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana |
Align length |
15 |
Score (bit) |
33.1 |
E-value |
0.52 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919198|Adiantum capillus-veneris mRNA, clone: YMU001_000122_D03. (439 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsi... 33 0.52 sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis th... 33 0.52 sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like O... 32 0.88 sp|A2T7E6|ZBT32_PANTR Zinc finger and BTB domain-containing prot... 32 1.2 sp|A1YGK1|ZBT32_PANPA Zinc finger and BTB domain-containing prot... 32 1.2 sp|Q9Y2Y4|ZBT32_HUMAN Zinc finger and BTB domain-containing prot... 32 1.5 sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis t... 31 2.0 sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protei... 31 2.6 sp|Q9CYZ8|SSBP2_MOUSE Single-stranded DNA-binding protein 2 OS=M... 30 3.4 sp|P81877|SSBP2_HUMAN Single-stranded DNA-binding protein 2 OS=H... 30 3.4 sp|Q5T442|CXG2_HUMAN Gap junction gamma-2 protein OS=Homo sapien... 30 3.4 sp|Q9JKD9|ZBT32_MOUSE Zinc finger and BTB domain-containing prot... 30 5.7 sp|Q91685|MIX2_XENLA Homeobox protein Mix.2 OS=Xenopus laevis GN... 30 5.7 sp|Q14643|ITPR1_HUMAN Inositol 1,4,5-trisphosphate receptor type... 30 5.7 sp|Q9P2P6|STAR9_HUMAN StAR-related lipid transfer protein 9 OS=H... 29 7.5 sp|Q9HCH0|K1602_HUMAN Uncharacterized protein KIAA1602 OS=Homo s... 29 7.5 sp|Q5RCJ1|CIP4_PONAB Cdc42-interacting protein 4 OS=Pongo abelii... 29 7.5 sp|Q15642|CIP4_HUMAN Cdc42-interacting protein 4 OS=Homo sapiens... 29 7.5 sp|P43167|YMP4_STRCO Uncharacterized protein in mprA 5'region (F... 29 9.8 sp|Q98948|SSBP3_CHICK Single-stranded DNA-binding protein 3 OS=G... 29 9.8 sp|Q9TU34|ITPR1_BOVIN Inositol 1,4,5-trisphosphate receptor type... 29 9.8
>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1 Length = 466
Score = 33.1 bits (74), Expect = 0.52 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +2
Query: 2 ITHRAFCDALAEESA 46 ITHRAFCDALAEE+A Sbjct: 184 ITHRAFCDALAEETA 198
>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1 Length = 506
Score = 33.1 bits (74), Expect = 0.52 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +2
Query: 2 ITHRAFCDALAEESA 46 ITHRAFCDALAEE+A Sbjct: 188 ITHRAFCDALAEETA 202
>sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like OS=Manduca sexta GN=ARA1 PE=2 SV=1 Length = 516
Score = 32.3 bits (72), Expect = 0.88 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -2
Query: 207 EGRPELAAPPRMPPYAEAPLTCASCA 130 EG P + APPR PP A CA+CA Sbjct: 384 EGSPGVPAPPRPPPCAPPLAPCAACA 409
>sp|A2T7E6|ZBT32_PANTR Zinc finger and BTB domain-containing protein 32 OS=Pan troglodytes GN=ZBTB32 PE=3 SV=1 Length = 487
Score = 32.0 bits (71), Expect = 1.2 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2
Query: 287 RANRLPLWLSAAAAAGDHHQLLSVSPNPNNIPFHPSFLS 403 R +R+PL L+A +QL S SP P ++P P+ LS Sbjct: 291 REHRIPLSLNAPKGLWSQNQLASSSPTPGSLPQGPAQLS 329
>sp|A1YGK1|ZBT32_PANPA Zinc finger and BTB domain-containing protein 32 OS=Pan paniscus GN=ZBTB32 PE=3 SV=1 Length = 487
Score = 32.0 bits (71), Expect = 1.2 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2
Query: 287 RANRLPLWLSAAAAAGDHHQLLSVSPNPNNIPFHPSFLS 403 R +R+PL L+A +QL S SP P ++P P+ LS Sbjct: 291 REHRIPLSLNAPKGLWSQNQLASSSPTPGSLPQGPAQLS 329
>sp|Q9Y2Y4|ZBT32_HUMAN Zinc finger and BTB domain-containing protein 32 OS=Homo sapiens GN=ZBTB32 PE=1 SV=1 Length = 487
Score = 31.6 bits (70), Expect = 1.5 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +2
Query: 287 RANRLPLWLSAAAAAGDHHQLLSVSPNPNNIPFHPSFLS 403 R R+PL L+A +QL S SP P ++P P+ LS Sbjct: 291 REQRIPLSLNAPKGLWSQNQLASSSPTPGSLPQGPAQLS 329
>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1 Length = 503
Score = 31.2 bits (69), Expect = 2.0 Identities = 13/15 (86%), Positives = 13/15 (86%) Frame = +2
Query: 2 ITHRAFCDALAEESA 46 ITHRAFCDAL EE A Sbjct: 201 ITHRAFCDALTEEGA 215
>sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2 Length = 579
Score = 30.8 bits (68), Expect = 2.6 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Frame = +2
Query: 284 GRANRLPL-WLSAAAAAGDHHQ-LLSVSPNPNNIPFHP-SFLSSFQTNAS 424 G N +P+ LS +AAA D+HQ S SP+ + P+ P SF S QTN + Sbjct: 39 GTLNSIPIKHLSTSAAANDYHQNPQSGSPSQHQRPYPPQSFDSQNQTNTN 88
>sp|Q9CYZ8|SSBP2_MOUSE Single-stranded DNA-binding protein 2 OS=Mus musculus GN=Ssbp2 PE=2 SV=1 Length = 361
Score = 30.4 bits (67), Expect = 3.4 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1
Query: 28 PGGGERT-QSAEPNYGGPLRRRSPPLAQHPL 117 P G + T Q PN GGP++R +PP PL Sbjct: 157 PSGMDPTRQQGHPNMGGPMQRMTPPRGMVPL 187
>sp|P81877|SSBP2_HUMAN Single-stranded DNA-binding protein 2 OS=Homo sapiens GN=SSBP2 PE=1 SV=2 Length = 361
Score = 30.4 bits (67), Expect = 3.4 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1
Query: 28 PGGGERT-QSAEPNYGGPLRRRSPPLAQHPL 117 P G + T Q PN GGP++R +PP PL Sbjct: 157 PSGMDPTRQQGHPNMGGPMQRMTPPRGMVPL 187
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6SS63 |
Definition |
tr|B6SS63|B6SS63_MAIZE Nucleic acid binding protein OS=Zea mays |
Align length |
15 |
Score (bit) |
34.3 |
E-value |
0.9 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919198|Adiantum capillus-veneris mRNA, clone: YMU001_000122_D03. (439 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6SS63|B6SS63_MAIZE Nucleic acid binding protein OS=Zea mays ... 34 0.90 tr|B4WUN2|B4WUN2_9SYNE Cadmium-translocating P-type ATPase OS=Sy... 35 1.4 tr|Q9C722|Q9C722_ARATH Zinc finger protein, putative OS=Arabidop... 35 2.4 tr|Q8RX03|Q8RX03_ARATH Putative zinc finger protein OS=Arabidops... 35 2.4 tr|Q8H1F5|Q8H1F5_ARATH Putative zinc finger protein OS=Arabidops... 35 2.4 tr|Q5SMY2|Q5SMY2_ORYSJ Putative zinc finger protein ID1 (Putativ... 35 2.4 tr|Q2HVE6|Q2HVE6_MEDTR Zinc finger, C2H2-type OS=Medicago trunca... 35 2.4 tr|A7PUY6|A7PUY6_VITVI Chromosome chr4 scaffold_32, whole genome... 35 2.4 tr|A2WLN2|A2WLN2_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4 tr|Q9SCQ6|Q9SCQ6_ARATH Zinc finger protein (At3g50700) OS=Arabid... 34 3.2 tr|Q9M3F1|Q9M3F1_ARATH Zinc finger protein OS=Arabidopsis thalia... 34 3.2 tr|Q9LVQ7|Q9LVQ7_ARATH Zinc finger protein OS=Arabidopsis thalia... 34 3.2 tr|Q944L3|Q944L3_ARATH AT3g45260/F18N11_20 (ID1-like zinc finger... 34 3.2 tr|Q10QG1|Q10QG1_ORYSJ Zinc finger, C2H2 type family protein, ex... 34 3.2 tr|O22759|O22759_ARATH Putative zinc finger protein OS=Arabidops... 34 3.2 tr|B8LP08|B8LP08_PICSI Putative uncharacterized protein OS=Picea... 34 3.2 tr|B8AQ36|B8AQ36_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.2 tr|A9T4T1|A9T4T1_PHYPA Predicted protein OS=Physcomitrella paten... 34 3.2 tr|A9SVP8|A9SVP8_PHYPA Predicted protein OS=Physcomitrella paten... 34 3.2 tr|A9S2M4|A9S2M4_PHYPA Predicted protein (Fragment) OS=Physcomit... 34 3.2 tr|A7PUH4|A7PUH4_VITVI Chromosome chr7 scaffold_31, whole genome... 34 3.2 tr|A7P6S4|A7P6S4_VITVI Chromosome chr9 scaffold_7, whole genome ... 34 3.2 tr|A7P4L5|A7P4L5_VITVI Chromosome chr4 scaffold_6, whole genome ... 34 3.2 tr|A7NZH2|A7NZH2_VITVI Chromosome chr6 scaffold_3, whole genome ... 34 3.2 tr|A5BN05|A5BN05_VITVI Putative uncharacterized protein OS=Vitis... 34 3.2 tr|A3AF45|A3AF45_ORYSJ Putative uncharacterized protein OS=Oryza... 34 3.2 tr|B4PL77|B4PL77_DROYA GE25231 OS=Drosophila yakuba GN=GE25231 P... 34 3.2 tr|B8PJA8|B8PJA8_9APHY Predicted protein OS=Postia placenta Mad-... 34 3.2 tr|Q7XEJ8|Q7XEJ8_ORYSJ Os10g0419200 protein OS=Oryza sativa subs... 33 5.4 tr|O65215|O65215_MAIZE Zinc finger protein ID1 OS=Zea mays GN=id... 33 5.4
>tr|B6SS63|B6SS63_MAIZE Nucleic acid binding protein OS=Zea mays PE=2 SV=1 Length = 539
Score = 34.3 bits (77), Expect(2) = 0.90 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +2
Query: 2 ITHRAFCDALAEESA 46 ITHRAFCDALAEESA Sbjct: 175 ITHRAFCDALAEESA 189
Score = 21.2 bits (43), Expect(2) = 0.90 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +1
Query: 55 AEPNYGGPLRRRSPPLAQH 111 A P PLR++ PP A H Sbjct: 212 APPPAPAPLRQQPPPPAPH 230
>tr|B4WUN2|B4WUN2_9SYNE Cadmium-translocating P-type ATPase OS=Synechococcus sp. PCC 7335 GN=S7335_445 PE=4 SV=1 Length = 647
Score = 35.4 bits (80), Expect = 1.4 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Frame = +2
Query: 164 YGGILGGAANSGLPSKGSSLLDHMSPFDNPLMNXXXXXXXG--RANRLPLWLSAAAAAGD 337 Y G +GGAA G+ KGS LD ++ D + + G R N + A + Sbjct: 308 YFGGIGGAAKRGILVKGSKFLDALTQVDTVVFDKTGTLTKGNFRVNEI-----VVANGLN 362
Query: 338 HHQLLSVSPNPNNIPFHPSFLSSFQTNASSVNS 436 HQLL ++ + HP S Q VNS Sbjct: 363 EHQLLELAAQVESQSNHPVAQSIQQAYGKPVNS 395
>tr|Q9C722|Q9C722_ARATH Zinc finger protein, putative OS=Arabidopsis thaliana GN=T7N22.5 PE=4 SV=1 Length = 439
Score = 34.7 bits (78), Expect = 2.4 Identities = 16/22 (72%), Positives = 18/22 (81%) Frame = +2
Query: 2 ITHRAFCDALAEESALRVQSQI 67 ITHRAFCDALAEESA + + I Sbjct: 195 ITHRAFCDALAEESARAMPNPI 216
>tr|Q8RX03|Q8RX03_ARATH Putative zinc finger protein OS=Arabidopsis thaliana GN=At1g55110 PE=2 SV=1 Length = 455
Score = 34.7 bits (78), Expect = 2.4 Identities = 16/22 (72%), Positives = 18/22 (81%) Frame = +2
Query: 2 ITHRAFCDALAEESALRVQSQI 67 ITHRAFCDALAEESA + + I Sbjct: 211 ITHRAFCDALAEESARAMPNPI 232
>tr|Q8H1F5|Q8H1F5_ARATH Putative zinc finger protein OS=Arabidopsis thaliana GN=At1g55110 PE=2 SV=1 Length = 455
Score = 34.7 bits (78), Expect = 2.4 Identities = 16/22 (72%), Positives = 18/22 (81%) Frame = +2
Query: 2 ITHRAFCDALAEESALRVQSQI 67 ITHRAFCDALAEESA + + I Sbjct: 211 ITHRAFCDALAEESARAMPNPI 232
>tr|Q5SMY2|Q5SMY2_ORYSJ Putative zinc finger protein ID1 (Putative uncharacterized protein) (Os01g0195000 protein) OS=Oryza sativa subsp. japonica GN=P0498B01.11 PE=4 SV=1 Length = 487
Score = 34.7 bits (78), Expect = 2.4 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +2
Query: 2 ITHRAFCDALAEESALRV 55 ITHRAFCDALAEESA V Sbjct: 193 ITHRAFCDALAEESARAV 210
>tr|Q2HVE6|Q2HVE6_MEDTR Zinc finger, C2H2-type OS=Medicago truncatula GN=MtrDRAFT_AC148918g5v2 PE=4 SV=1 Length = 480
Score = 34.7 bits (78), Expect = 2.4 Identities = 17/23 (73%), Positives = 18/23 (78%) Frame = +2
Query: 2 ITHRAFCDALAEESALRVQSQIT 70 ITHRAFCDALAEES+ V Q T Sbjct: 193 ITHRAFCDALAEESSRTVIPQPT 215
>tr|A7PUY6|A7PUY6_VITVI Chromosome chr4 scaffold_32, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024976001 PE=4 SV=1 Length = 292
Score = 34.7 bits (78), Expect = 2.4 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = +2
Query: 2 ITHRAFCDALAEESALRVQSQ 64 ITHRAFCDALAEESA + Q+Q Sbjct: 184 ITHRAFCDALAEESA-KTQTQ 203
>tr|A2WLN2|A2WLN2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00752 PE=4 SV=1 Length = 487
Score = 34.7 bits (78), Expect = 2.4 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +2
Query: 2 ITHRAFCDALAEESALRV 55 ITHRAFCDALAEESA V Sbjct: 193 ITHRAFCDALAEESARAV 210
>tr|Q9SCQ6|Q9SCQ6_ARATH Zinc finger protein (At3g50700) OS=Arabidopsis thaliana GN=At3g50700 PE=2 SV=1 Length = 452
Score = 34.3 bits (77), Expect = 3.2 Identities = 16/21 (76%), Positives = 17/21 (80%) Frame = +2
Query: 2 ITHRAFCDALAEESALRVQSQ 64 ITHRAFCDALAEE+A SQ Sbjct: 181 ITHRAFCDALAEENARSHHSQ 201
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