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NBDC - LSDB Archive
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BP919050
Clone id YMU001_000120_F02
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCACATGGGGTGTGCATCATTCTTAGAATTTCTATGACAACTTCAGACAAGGCCAGTTGT
TGCTGGCCTTTCCTCCTTCGCCATGGGCTTTGCTTCCGACTGTGAGGCAGGGCGGCATGC
TATATTCTGCAGAAGGGCTCCAAGGTGGAAGGCCTACATGGTGGTCGAGACGCGAAGTTT
GGTGTTTGGGCATGCTCACCGTGTGAGAGCACCATGTGATAGCTTATGTGGACATAGTCC
GTTGGTGTGGCGGACCCTCGACTATGGTGGTGTGGTCTACAGGATCCTTCCTTCGGAGGA
TCGATTCGTGGTGCCAGCTCAAATTCATCCATGGTCGCTCATATCTTGCAGGTGATGGAG
CTCCCCAGCTCCCCCTTTTCTTCGGATGCATGTACTCGATTATCAATGGGTGGCCCCCAG
ATTAGCCGATCTACTTAGGTTATCTTTGTGGTGATGTTGTGAATGGTGGGGTGTCTTCCC
TGTTAGCCTGGCATATCTGGTAGTTCGTTTTGCAAGTCCTGCACGGAGTTTGTATGGTCT
ATG
■■Homology search results ■■ -
sp_hit_id P70512
Definition sp|P70512|HNF6_RAT Hepatocyte nuclear factor 6 OS=Rattus norvegicus
Align length 46
Score (bit) 24.3
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919050|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_F02.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70512|HNF6_RAT Hepatocyte nuclear factor 6 OS=Rattus norvegi...    24   0.57 
sp|Q5ASK9|U383_EMENI Putative methyltransferase UPF0383 OS=Emeri...    33   0.69 
sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing pr...    32   2.6  
sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3...    32   2.6  
sp|Q9STT8|ATH3_ARATH Putative ABC2 homolog 3 OS=Arabidopsis thal...    32   2.6  
sp|P50089|YG51_YEAST Uncharacterized protein YGR237C OS=Saccharo...    31   3.4  
sp|Q9FT45|FLA15_ARATH Fasciclin-like arabinogalactan protein 15 ...    31   4.5  
sp|Q2TJA6|NKD1_DANRE Protein naked cuticle homolog 1 OS=Danio re...    30   5.8  
sp|Q6ZS17|FA65A_HUMAN Protein FAM65A OS=Homo sapiens GN=FAM65A P...    30   7.6  
sp|Q9QYK4|H6ST3_MOUSE Heparan-sulfate 6-O-sulfotransferase 3 OS=...    30   9.9  
sp|Q9Z0K9|AMEL_CAVPO Amelogenin OS=Cavia porcellus GN=AMEL PE=2 ...    30   9.9  

>sp|P70512|HNF6_RAT Hepatocyte nuclear factor 6 OS=Rattus norvegicus
           GN=Onecut1 PE=1 SV=1
          Length = 465

 Score = 24.3 bits (51), Expect(3) = 0.57
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = -2

Query: 275 PHHHSRGSATPTDYVHI-----SYH--MVLSHGEHAQTPNFASRPP 159
           PH+   G+A PTD +       ++H  M+  HGE   TP  A   P
Sbjct: 198 PHYAHPGAAMPTDKMLTPNDFEAHHPAMLGRHGEQHLTPTSAGMVP 243



 Score = 23.9 bits (50), Expect(3) = 0.57
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 486 LTGKTPHHSQHHH 448
           ++ K PHH  HHH
Sbjct: 118 VSDKFPHHHHHHH 130



 Score = 22.7 bits (47), Expect(3) = 0.57
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -1

Query: 468 HHSQHHHKDNLSRSANLGATH**SSTCIRRKGGAGELHHL 349
           HH  HHH  +      L      S T +R + G   +++L
Sbjct: 125 HHHHHHHHHHPHHHQRLAGNVSGSFTLMRDERGLASMNNL 164


>sp|Q5ASK9|U383_EMENI Putative methyltransferase UPF0383
           OS=Emericella nidulans GN=AN8721 PE=3 SV=1
          Length = 606

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 161 PCRPSTLEPFCRI*HAALPHSRKQSPWRRRKGQQQLALSEVVIE 30
           PCRPST  P+  I    +P +R Q  + R K +    L+E  IE
Sbjct: 292 PCRPSTSSPYALIKDNVIPRNRVQDTYSRLKNKYAANLNERWIE 335


>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing
           protein 2 OS=Mus musculus GN=Tmtc2 PE=2 SV=1
          Length = 836

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 259 RLWWCGLQDPSFGGSIRGASSNSSMVAHILQVMELPS 369
           RL+W G + PSF  S   A+ + S++A  L  + LP+
Sbjct: 242 RLYWMGNKPPSFSNSDNPAADSDSLLARTLTFLYLPT 278


>sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3
           subunit G OS=Dictyostelium discoideum GN=eif3g PE=3 SV=1
          Length = 233

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 523 CRTCKTNYQICQANREDTPPFTTSPQR*PK*IG*SGGHPLIIEYMHPKKRGSWGAPSPAR 344
           CR CK N+   +   +D    TT PQ+  K        P+  +Y+ P  RG +   +P+ 
Sbjct: 94  CRICKKNHFTTKCPYKDALELTTQPQKSEK-----EEKPISNKYIAPNLRGGYTGSAPSG 148

Query: 343 YERPWMNLS 317
            + P + +S
Sbjct: 149 SDVPSIMVS 157


>sp|Q9STT8|ATH3_ARATH Putative ABC2 homolog 3 OS=Arabidopsis
           thaliana GN=ATH3 PE=3 SV=1
          Length = 895

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -2

Query: 308 RIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144
           R+  P   SCR      G+ +  DY +      L  G H+  P F  RP C P+T
Sbjct: 115 RLVDPARSSCRRTGSCPGTISEADYTNY-----LDPGIHSDLPIFQIRPYCTPTT 164


>sp|P50089|YG51_YEAST Uncharacterized protein YGR237C
           OS=Saccharomyces cerevisiae GN=YGR237C PE=1 SV=1
          Length = 785

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 522 AGLAKRTTRYARLTGKTPHHSQHHHKDNLSRSANLGAT 409
           AGL+ RT+  +  +G+   H  HHH +++SR+    +T
Sbjct: 709 AGLSPRTSSTSSSSGQRKAHHHHHHHNHVSRTKTTEST 746


>sp|Q9FT45|FLA15_ARATH Fasciclin-like arabinogalactan protein 15
           OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1
          Length = 436

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = -2

Query: 413 PPIDNRVHASEEKGELGSSITCKI*ATMDEFELAPRIDP-PKEGSCRPHHHSRGSATPTD 237
           P +D R H  ++K     +    +    D     P + P P  G   P HH  G A   D
Sbjct: 192 PEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGEAQVKD 251

Query: 236 YVHISYH 216
           ++H   H
Sbjct: 252 FIHTLLH 258


>sp|Q2TJA6|NKD1_DANRE Protein naked cuticle homolog 1 OS=Danio rerio
           GN=nkd1 PE=2 SV=1
          Length = 440

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
 Frame = -2

Query: 338 ATMDEFELAPRIDPPKEGSCRPHHHSRGSATPTDYVHI---SYHMVLSHGEHAQTPNFAS 168
           AT    +   R   P+ G   P HH R     TD   I     H + S   H   P  AS
Sbjct: 284 ATRSSNQSRSRSQEPENGQVHPAHHRRSQTMSTDPPAILTRHTHALRSPKTHRTPPTQAS 343

Query: 167 RPPCRPSTLEPFCRI*HAALPHSRKQSPWRRRKGQQQLAL 48
                     P   + +   PH +   P+RR K + + AL
Sbjct: 344 AGRVMRRGAPPPPSVPNQTPPH-QSSGPYRRHKQRPKEAL 382


>sp|Q6ZS17|FA65A_HUMAN Protein FAM65A OS=Homo sapiens GN=FAM65A PE=1
           SV=1
          Length = 1223

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 25/96 (26%), Positives = 36/96 (37%)
 Frame = -3

Query: 361 APSPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQRTMST*AITWCSHTVSMPKH 182
           APSP  +          H+ I+        T  + GP    T  T  +   +HT + P H
Sbjct: 566 APSPLTHTTTGST----HKPIISTLTTTGPTLNIIGPVQTTTSPTHTMPSPTHTTASPTH 621

Query: 181 QTSRLDHHVGLPPWSPSAEYSMPPCLTVGSKAHGEG 74
            ++   H     P SP+ + SM P  T      G G
Sbjct: 622 TSTSPTH----TPTSPTHKTSMSPPTTTSPTPSGMG 653


>sp|Q9QYK4|H6ST3_MOUSE Heparan-sulfate 6-O-sulfotransferase 3 OS=Mus
           musculus GN=Hs6st3 PE=1 SV=1
          Length = 470

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 338 ATMDEFELAPRIDPPKEGSCRPHHHSRGSATPTD 237
           A +DE+E  P++ PP  G   P   SRG A P D
Sbjct: 60  APLDEWERRPQLPPPPRG---PPEGSRGVAAPED 90
tr_hit_id B4QQH4
Definition tr|B4QQH4|B4QQH4_DROSI GD13282 OS=Drosophila simulans
Align length 99
Score (bit) 38.1
E-value 0.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919050|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_F02.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4QQH4|B4QQH4_DROSI GD13282 OS=Drosophila simulans GN=GD13282...    38   0.30 
tr|A7PD40|A7PD40_VITVI Chromosome chr17 scaffold_12, whole genom...    37   0.67 
tr|B4HU19|B4HU19_DROSE GM14002 OS=Drosophila sechellia GN=GM1400...    37   0.88 
tr|B2SH77|B2SH77_FRATM Endonuclease III OS=Francisella tularensi...    36   1.1  
tr|B2W378|B2W378_PYRTR Putative uncharacterized protein OS=Pyren...    36   1.1  
tr|Q9VZG4|Q9VZG4_DROME CG15005 OS=Drosophila melanogaster GN=CG1...    35   2.6  
tr|A4TFU1|A4TFU1_MYCGI Putative uncharacterized protein OS=Mycob...    34   4.4  
tr|A0Q6Q7|A0Q6Q7_FRATN Endonuclease III OS=Francisella tularensi...    34   4.4  
tr|B4AUC3|B4AUC3_FRANO Endonuclease III OS=Francisella novicida ...    34   4.4  
tr|A7JM74|A7JM74_FRANO Endonuclease III OS=Francisella novicida ...    34   4.4  
tr|A7JI30|A7JI30_FRANO Putative uncharacterized protein OS=Franc...    34   4.4  
tr|A3HV71|A3HV71_9SPHI Putative endonuclease OS=Algoriphagus sp....    34   4.4  
tr|Q5NH26|Q5NH26_FRATT Endonuclease III OS=Francisella tularensi...    34   5.7  
tr|Q2A3R8|Q2A3R8_FRATH Endonuclease III OS=Francisella tularensi...    34   5.7  
tr|Q14IH8|Q14IH8_FRAT1 Endonuclease III OS=Francisella tularensi...    34   5.7  
tr|Q0BM72|Q0BM72_FRATO DNA-(Apurinic or apyrimidinic site) lyase...    34   5.7  
tr|A7NBU4|A7NBU4_FRATF Endonuclease III OS=Francisella tularensi...    34   5.7  
tr|A4IY94|A4IY94_FRATW Endonuclease III OS=Francisella tularensi...    34   5.7  
tr|A7YTF9|A7YTF9_FRATU Putative uncharacterized protein OS=Franc...    34   5.7  
tr|A7JBS6|A7JBS6_FRATT Putative uncharacterized protein OS=Franc...    34   5.7  
tr|B1XTQ3|B1XTQ3_POLNS Endonuclease III OS=Polynucleobacter nece...    33   7.4  
tr|B6P6K6|B6P6K6_BRAFL Putative uncharacterized protein OS=Branc...    33   7.4  
tr|Q0UCT0|Q0UCT0_PHANO Putative uncharacterized protein OS=Phaeo...    27   7.6  
tr|A0NGX1|A0NGX1_ANOGA AGAP001784-PA (Fragment) OS=Anopheles gam...    30   8.9  
tr|A6TTQ4|A6TTQ4_ALKMQ Oxidoreductase domain protein OS=Alkaliph...    33   9.7  
tr|B3MK41|B3MK41_DROAN GF15367 OS=Drosophila ananassae GN=GF1536...    33   9.7  

>tr|B4QQH4|B4QQH4_DROSI GD13282 OS=Drosophila simulans GN=GD13282
           PE=4 SV=1
          Length = 629

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
 Frame = -3

Query: 388 HPKKRGSWGAP------SPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQRTMST 227
           HP K GS   P      SP  +E      S HH+S +    P  H    E PP    +  
Sbjct: 117 HPPKHGSINNPNFEIAYSPPAFEISTSYQSNHHQSYVPPHPPSSHDGFAE-PPSNNYVKP 175

Query: 226 *AITWCSHTVSMPKHQTSRLDHHVGLPPWSPSAEYSMPP 110
                 +++ + P+H +S  D     PP  PS+ Y  PP
Sbjct: 176 PPQHPPTNSYAPPQHPSSSYDQ----PPQHPSSSYDQPP 210


>tr|A7PD40|A7PD40_VITVI Chromosome chr17 scaffold_12, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00016129001
            PE=4 SV=1
          Length = 1127

 Score = 37.0 bits (84), Expect = 0.67
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 287  GSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRP 162
            GSC+PH H + ++    + H++YH   S    +QTPNF S P
Sbjct: 1063 GSCKPHQHQKMASA---WYHVTYHSTFS----SQTPNFLSFP 1097


>tr|B4HU19|B4HU19_DROSE GM14002 OS=Drosophila sechellia GN=GM14002
           PE=4 SV=1
          Length = 749

 Score = 36.6 bits (83), Expect = 0.88
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
 Frame = -3

Query: 388 HPKKRGSWGAP------SPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQRTMST 227
           +P K GS   P      SP  +E      S HH+S +    P  H    E PP    +  
Sbjct: 244 YPPKHGSINNPNFEIAYSPPAFEISTSYQSNHHQSYVPSHPPSSHDGFAE-PPSNNYVKP 302

Query: 226 *AITWCSHTVSMPKHQTSRLDHHVGLPPWSPSAEYSMPP 110
                 +++ + P+H +S  D     PP  PS+ Y  PP
Sbjct: 303 PPQHAPTNSYAPPQHPSSSYDQ----PPQHPSSSYDQPP 337


>tr|B2SH77|B2SH77_FRATM Endonuclease III OS=Francisella tularensis
           subsp. mediasiatica (strain FSC147) GN=nth PE=4 SV=1
          Length = 212

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 323 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144
           F LA RI   K  +            P +Y+H ++H ++ HG H  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRHICT---AQRPRCRNCI 198

Query: 143 LEPFC 129
           +  +C
Sbjct: 199 IYDYC 203


>tr|B2W378|B2W378_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_03876 PE=4 SV=1
          Length = 824

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 309 WCQLKFIHGRSYLAGDGAPQLPLFFGCMYSIINGWPPD*PIYLGYLCGD 455
           WC + F+  R+ + GDG  ++ L++  MY+ I+   P   I+LG L  D
Sbjct: 71  WC-MHFVGNRAIVLGDGEKEIQLYYSPMYTAISAVLPVLVIFLGLLAAD 118


>tr|Q9VZG4|Q9VZG4_DROME CG15005 OS=Drosophila melanogaster
           GN=CG15005 PE=2 SV=2
          Length = 750

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
 Frame = -3

Query: 388 HPKKRGSWGAP------SPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQRTMST 227
           HP K GS   P      SP  +E      S H +S +    P  H    E PP    +  
Sbjct: 244 HPPKHGSINNPNFEIAYSPPAFEISTSYQSNHQQSYVPPHPPSSHDGFAE-PPSNNYVKP 302

Query: 226 *AITWCSHTVSMPKHQTSRLDHHVGLPPWSPSAEYSMPP 110
                 +++ + P+H +S  D     PP  PS+ Y  PP
Sbjct: 303 PPQHPPTNSYAPPQHPSSSYDQ----PPQHPSSSYDQPP 337


>tr|A4TFU1|A4TFU1_MYCGI Putative uncharacterized protein
           OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_5533
           PE=4 SV=1
          Length = 366

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 379 KRGSWGAPSPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQR 239
           +RG+    SP RY RP +   WH   ++ R+ PVD+  + + PP +R
Sbjct: 164 RRGTGSMASPQRYRRPSV---WH---LVSRRRPVDNVAVCDLPPSRR 204


>tr|A0Q6Q7|A0Q6Q7_FRATN Endonuclease III OS=Francisella tularensis
           subsp. novicida (strain U112) GN=nth PE=4 SV=1
          Length = 212

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 323 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144
           F LA RI   K  +            P +Y+H ++H ++ HG +  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198

Query: 143 LEPFC 129
           +  +C
Sbjct: 199 IYDYC 203


>tr|B4AUC3|B4AUC3_FRANO Endonuclease III OS=Francisella novicida FTE
           GN=nth PE=4 SV=1
          Length = 212

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 323 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144
           F LA RI   K  +            P +Y+H ++H ++ HG +  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198

Query: 143 LEPFC 129
           +  +C
Sbjct: 199 IYDYC 203


>tr|A7JM74|A7JM74_FRANO Endonuclease III OS=Francisella novicida
           GA99-3548 GN=FTDG_00610 PE=4 SV=1
          Length = 212

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 323 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144
           F LA RI   K  +            P +Y+H ++H ++ HG +  T   A RP CR   
Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198

Query: 143 LEPFC 129
           +  +C
Sbjct: 199 IYDYC 203