| BP919010 |
| Clone id |
YMU001_000120_B01 |
| Library |
YMU01 |
| Length |
521 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000120_B01. |
| Accession |
BP919010 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
GATGGCAGTGTGAGCAGGTACAAGGCTAGATTAGTAGCCAAAGGTTATGCACAAACCTAT
GGGATAGATTATGAGGAGACTTTTAGCCCCATAGCTAAGATGGCTATAGTTCGTGCTATT
ATTGCAGTGGCTGCATCAAAAGGGTGGTTGTTATATCAGATGGATGTAAGGAATGCGTTC
TTGCATGGTGACTTGCAAGAAGAAGTGTATATGCAGCAGCCACAGGGATATGAGGATGTG
AGGCATCCCCATTATGTATGCAAGCTTAAGAAAGCCTTGTATGGGCTGAAGCAAGTGCCA
AGAGCATGGCATGCAAGAATTGTGGCGTGCTTATATCCATTGGGTTTCATATGGCTGATG
CAGATCACTCATTGTATGTGCGAGACAATGAGAATGGCATTGTCATCATTTGCATTTATG
TGGATGATTTAATTGTTGGAGGTGATAATGAGACCGAGATAGTGCATGTAAAGACTCTCT
TGAAGCAGGAATTTGACATGAAAGATTTGGGGGAGCTGACT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P10978 |
| Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
| Align length |
106 |
| Score (bit) |
108.0 |
| E-value |
3.0e-30 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919010|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_B01.
(521 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 108 3e-30
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 94 5e-24
sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W O... 59 8e-17
sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Sa... 46 7e-08
sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=... 46 7e-08
sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=... 46 7e-08
sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=... 46 7e-08
sp|Q12501|YO22B_YEAST Transposon Ty2-OR2 Gag-Pol polyprotein OS=... 45 1e-07
sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein OS=... 45 1e-07
sp|P0C2J3|YL21B_YEAST Transposon Ty2-LR1 Gag-Pol polyprotein OS=... 45 1e-07
sp|Q12337|YG21B_YEAST Transposon Ty2-GR1 Gag-Pol polyprotein OS=... 45 1e-07
sp|Q12503|YF21B_YEAST Transposon Ty2-F/Ty2-GR2 Gag-Pol polyprote... 45 1e-07
sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=... 45 1e-07
sp|Q03494|YD22B_YEAST Transposon Ty2-DR2 Gag-Pol polyprotein OS=... 45 1e-07
sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=... 45 1e-07
sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Sa... 45 1e-07
sp|Q12491|YB21B_YEAST Transposon Ty2-B Gag-Pol polyprotein OS=Sa... 45 1e-07
sp|Q04214|YM13B_YEAST Transposon Ty1-MR1 Gag-Pol polyprotein OS=... 44 2e-07
sp|Q99231|YD12B_YEAST Transposon Ty1-DR3 Gag-Pol polyprotein OS=... 44 2e-07
sp|O13527|YA11B_YEAST Transposon Ty1-A Gag-Pol polyprotein OS=Sa... 44 2e-07
sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein OS=... 44 3e-07
sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=S... 44 3e-07
sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=S... 44 3e-07
sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=... 44 3e-07
sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=... 44 3e-07
sp|P0C2I5|YL12B_YEAST Transposon Ty1-LR2 Gag-Pol polyprotein OS=... 44 3e-07
sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=... 44 3e-07
sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=... 44 3e-07
sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=... 44 3e-07
sp|Q03855|YD11B_YEAST Transposon Ty1-DR1 Gag-Pol polyprotein OS=... 44 3e-07
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328
Score = 108 bits (271), Expect(2) = 3e-30
Identities = 52/106 (49%), Positives = 67/106 (63%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
D + RYKARLV KG+ Q GID++E FSP S + Q+DV+ AF
Sbjct: 868 DCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAF 927
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHAR 318
LHGDL+EE+YM+QP+G+E H VCKL K+LYGLKQ PR W+ +
Sbjct: 928 LHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMK 973
Score = 43.1 bits (100), Expect(2) = 3e-30
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +3
Query: 375 YVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDLG 512
+ R +EN +I+ +YVDD+++ G ++ I +K L + FDMKDLG
Sbjct: 994 FKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLG 1039
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
PE=1 SV=3
Length = 1409
Score = 94.4 bits (233), Expect(2) = 5e-24
Identities = 49/102 (48%), Positives = 62/102 (60%)
Frame = +1
Query: 4 GSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAFL 183
G+ RYKARLVA+G+ Q Y IDYEETF+P ++QMDV+ AFL
Sbjct: 949 GNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFL 1008
Query: 184 HGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAW 309
+G L+EE+YM+ PQG + VCKL KA+YGLKQ R W
Sbjct: 1009 NGTLKEEIYMRLPQGIS--CNSDNVCKLNKAIYGLKQAARCW 1048
Score = 36.6 bits (83), Expect(2) = 5e-24
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 345 FHMADADHSLYVRD--NENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDLGEL 518
F + D +Y+ D N N + + +YVDD+++ + T + + K L ++F M DL E+
Sbjct: 1061 FVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI 1120
>sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W
OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2
Length = 308
Score = 58.9 bits (141), Expect(2) = 8e-17
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +1
Query: 160 MDVRNAFLHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYP 339
MDV AFL+ + E +Y++QP G+ + R+P YV +L +YGLKQ P W+ I L
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 340 LGF 348
+GF
Sbjct: 61 IGF 63
Score = 47.8 bits (112), Expect(2) = 8e-17
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L IGF + +H LY R +G + I +YVDDL+V + VK L + + MKDL
Sbjct: 58 LKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDL 117
Query: 510 GEL 518
G++
Sbjct: 118 GKV 120
>sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-H PE=1 SV=1
Length = 1793
Score = 45.8 bits (107), Expect(2) = 7e-08
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Frame = +1
Query: 19 YKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXX-----SKGWLLYQMDVRNAFL 183
+KAR VA+G I + +T+ P + + Q+D+ +A+L
Sbjct: 1336 HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYL 1390
Query: 184 HGDLQEEVYMQQPQ--GYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACL 333
+ D++EE+Y++ P G D + +LKK+LYGLKQ W+ I + L
Sbjct: 1391 YADIKEELYIRPPPHLGMND-----KLIRLKKSLYGLKQSGANWYETIKSYL 1437
Score = 30.4 bits (67), Expect(2) = 7e-08
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 ENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMK--DLGE 515
+N V IC++VDD+I+ + + T LK+++D K +LGE
Sbjct: 1454 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE 1497
>sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-MR2 PE=1 SV=2
Length = 1755
Score = 45.8 bits (107), Expect(2) = 7e-08
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Frame = +1
Query: 19 YKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXX-----SKGWLLYQMDVRNAFL 183
+KAR VA+G I + +T+ P + + Q+D+ +A+L
Sbjct: 1298 HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYL 1352
Query: 184 HGDLQEEVYMQQPQ--GYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACL 333
+ D++EE+Y++ P G D + +LKK+LYGLKQ W+ I + L
Sbjct: 1353 YADIKEELYIRPPPHLGMND-----KLIRLKKSLYGLKQSGANWYETIKSYL 1399
Score = 30.4 bits (67), Expect(2) = 7e-08
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 ENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMK--DLGE 515
+N V IC++VDD+I+ + + T LK+++D K +LGE
Sbjct: 1416 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE 1459
>sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-LR1 PE=1 SV=1
Length = 1755
Score = 45.8 bits (107), Expect(2) = 7e-08
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Frame = +1
Query: 19 YKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXX-----SKGWLLYQMDVRNAFL 183
+KAR VA+G I + +T+ P + + Q+D+ +A+L
Sbjct: 1298 HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLASDNNYYITQLDISSAYL 1352
Query: 184 HGDLQEEVYMQQPQ--GYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACL 333
+ D++EE+Y++ P G D + +LKK+LYGLKQ W+ I + L
Sbjct: 1353 YADIKEELYIRPPPHLGMND-----KLIRLKKSLYGLKQSGANWYETIKSYL 1399
Score = 30.4 bits (67), Expect(2) = 7e-08
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 ENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMK--DLGE 515
+N V IC++VDD+I+ + + T LK+++D K +LGE
Sbjct: 1416 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE 1459
>sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-ER2 PE=1 SV=1
Length = 1755
Score = 45.8 bits (107), Expect(2) = 7e-08
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Frame = +1
Query: 19 YKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXX-----SKGWLLYQMDVRNAFL 183
+KAR VA+G I + +T+ P + + Q+D+ +A+L
Sbjct: 1298 HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYL 1352
Query: 184 HGDLQEEVYMQQPQ--GYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACL 333
+ D++EE+Y++ P G D + +LKK+LYGLKQ W+ I + L
Sbjct: 1353 YADIKEELYIRPPPHLGMND-----KLIRLKKSLYGLKQSGANWYETIKSYL 1399
Score = 30.4 bits (67), Expect(2) = 7e-08
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 ENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMK--DLGE 515
+N V IC++VDD+I+ + + T LK+++D K +LGE
Sbjct: 1416 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE 1459
>sp|Q12501|YO22B_YEAST Transposon Ty2-OR2 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY2B-OR2 PE=3 SV=1
Length = 1770
Score = 45.1 bits (105), Expect(2) = 1e-07
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Frame = +1
Query: 19 YKARLVAKGYAQ---TYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAFLHG 189
+KAR VA+G Q TY D + S + + Q+D+ +A+L+
Sbjct: 1313 HKARFVARGDIQHPDTYDSDMQ---SNTVHHYALMTSLSIALDNDYYITQLDISSAYLYA 1369
Query: 190 DLQEEVYMQQPQ--GYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACL 333
D++EE+Y++ P G D + +L+K+LYGLKQ W+ I + L
Sbjct: 1370 DIKEELYIRPPPHLGLND-----KLLRLRKSLYGLKQSGANWYETIKSYL 1414
Score = 30.4 bits (67), Expect(2) = 1e-07
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 ENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMK--DLGE 515
+N V IC++VDD+I+ + + T LK+++D K +LGE
Sbjct: 1431 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE 1474
>sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY2B-OR1 PE=3 SV=1
Length = 1770
Score = 45.1 bits (105), Expect(2) = 1e-07
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Frame = +1
Query: 19 YKARLVAKGYAQ---TYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAFLHG 189
+KAR VA+G Q TY D + S + + Q+D+ +A+L+
Sbjct: 1313 HKARFVARGDIQHPDTYDSDMQ---SNTVHHYALMTSLSIALDNDYYITQLDISSAYLYA 1369
Query: 190 DLQEEVYMQQPQ--GYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACL 333
D++EE+Y++ P G D + +L+K+LYGLKQ W+ I + L
Sbjct: 1370 DIKEELYIRPPPHLGLND-----KLLRLRKSLYGLKQSGANWYETIKSYL 1414
Score = 30.4 bits (67), Expect(2) = 1e-07
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 ENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMK--DLGE 515
+N V IC++VDD+I+ + + T LK+++D K +LGE
Sbjct: 1431 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE 1474
>sp|P0C2J3|YL21B_YEAST Transposon Ty2-LR1 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY2B-LR1 PE=3 SV=1
Length = 1770
Score = 45.1 bits (105), Expect(2) = 1e-07
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Frame = +1
Query: 19 YKARLVAKGYAQ---TYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAFLHG 189
+KAR VA+G Q TY D + S + + Q+D+ +A+L+
Sbjct: 1313 HKARFVARGDIQHPDTYDSDMQ---SNTVHHYALMTSLSIALDNDYYITQLDISSAYLYA 1369
Query: 190 DLQEEVYMQQPQ--GYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACL 333
D++EE+Y++ P G D + +L+K+LYGLKQ W+ I + L
Sbjct: 1370 DIKEELYIRPPPHLGLND-----KLLRLRKSLYGLKQSGANWYETIKSYL 1414
Score = 30.4 bits (67), Expect(2) = 1e-07
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 ENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMK--DLGE 515
+N V IC++VDD+I+ + + T LK+++D K +LGE
Sbjct: 1431 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE 1474
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q688S3 |
| Definition |
tr|Q688S3|Q688S3_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica |
| Align length |
116 |
| Score (bit) |
149.0 |
| E-value |
5.0e-43 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919010|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_B01.
(521 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q688S3|Q688S3_ORYSJ Putative polyprotein OS=Oryza sativa subs... 149 5e-43
tr|Q65X82|Q65X82_ORYSJ Putative polyprotein (Putative uncharacte... 151 1e-42
tr|Q0J292|Q0J292_ORYSJ Os09g0368000 protein OS=Oryza sativa subs... 147 1e-42
tr|Q8H7X8|Q8H7X8_ORYSJ Putative gag-pol polyprotein (Retrotransp... 150 2e-42
tr|Q0JHK2|Q0JHK2_ORYSJ Os01g0858800 protein OS=Oryza sativa subs... 150 2e-42
tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis... 139 3e-42
tr|Q6F356|Q6F356_ORYSJ Putative polyprotein OS=Oryza sativa subs... 151 4e-42
tr|Q8W0X9|Q8W0X9_MAIZE Putative copia-like retrotransposon Hopsc... 147 1e-41
tr|Q53MM3|Q53MM3_ORYSJ Retrotransposon protein, putative, Ty1-co... 146 1e-41
tr|Q2QQL7|Q2QQL7_ORYSJ Retrotransposon protein, putative, Ty1-co... 146 2e-41
tr|O24438|O24438_ORYLO Retrofit OS=Oryza longistaminata GN=gag/p... 145 3e-41
tr|Q6ATL7|Q6ATL7_ORYSJ Putative polyprotein (Retrotransposon pro... 148 4e-41
tr|Q2QY49|Q2QY49_ORYSJ Retrotransposon protein, putative, Ty1-co... 150 5e-41
tr|Q2QRW4|Q2QRW4_ORYSJ Retrotransposon protein, putative, Ty1-co... 146 7e-41
tr|Q2R0Z7|Q2R0Z7_ORYSJ Retrotransposon protein, putative, Ty1-co... 142 9e-41
tr|Q10L29|Q10L29_ORYSJ Retrotransposon protein, putative, Ty1-co... 143 2e-40
tr|A5C275|A5C275_VITVI Putative uncharacterized protein OS=Vitis... 134 2e-40
tr|Q9ZQK0|Q9ZQK0_ARATH Putative retroelement pol polyprotein OS=... 123 4e-40
tr|Q2R2C8|Q2R2C8_ORYSJ Retrotransposon protein, putative, Ty1-co... 139 6e-40
tr|Q8RZ67|Q8RZ67_ORYSJ Putative rice retrotransposon retrofit ga... 141 8e-40
tr|Q7XN23|Q7XN23_ORYSA OSJNBb0016D16.10 protein OS=Oryza sativa ... 139 1e-39
tr|Q7XE22|Q7XE22_ORYSJ Retrotransposon protein, putative, Ty1-co... 145 1e-39
tr|O81448|O81448_ARATH T27D20.7 protein (Putative reverse transc... 121 2e-39
tr|A5C5Y2|A5C5Y2_VITVI Putative uncharacterized protein OS=Vitis... 139 2e-39
tr|A5BFT3|A5BFT3_VITVI Putative uncharacterized protein OS=Vitis... 131 3e-39
tr|Q4JQ46|Q4JQ46_CYCRE Reverse transcriptase (Fragment) OS=Cycas... 139 3e-39
tr|Q75LJ1|Q75LJ1_ORYSJ Putative copia-like retrotransposon prote... 148 4e-39
tr|A5BPJ0|A5BPJ0_VITVI Putative uncharacterized protein OS=Vitis... 132 4e-39
tr|Q10MB5|Q10MB5_ORYSJ Retrotransposon protein, putative, Ty1-co... 148 4e-39
tr|Q7XKG6|Q7XKG6_ORYSA OSJNBb0065J09.3 protein OS=Oryza sativa G... 126 4e-39
>tr|Q688S3|Q688S3_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
japonica GN=OSJNBa0009N21.4 PE=4 SV=1
Length = 1210
Score = 149 bits (375), Expect(2) = 5e-43
Identities = 71/116 (61%), Positives = 84/116 (72%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DGS+ RYKARLVAKG+ Q YGIDYE+TFSP S+GW L Q+DV+NAF
Sbjct: 871 DGSLDRYKARLVAKGFEQRYGIDYEDTFSPVVKAATIRTILSVAVSRGWSLRQLDVQNAF 930
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYM+QP GYED P+Y+CKL KALYGLKQ PRAW++R+ L LGF
Sbjct: 931 LHGYLEEEVYMRQPPGYEDRNKPNYICKLDKALYGLKQAPRAWYSRLSMKLCDLGF 986
Score = 49.3 bits (116), Expect(2) = 5e-43
Identities = 25/63 (39%), Positives = 36/63 (57%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L +GF + AD SL+ + N ++ + IYVDD+IV E + LKQEF +KD
Sbjct: 981 LCDLGFQPSKADTSLFFYNKGNIVIFVLIYVDDIIVASSTEDATNALLRDLKQEFALKDF 1040
Query: 510 GEL 518
G+L
Sbjct: 1041 GDL 1043
>tr|Q65X82|Q65X82_ORYSJ Putative polyprotein (Putative uncharacterized
protein OJ1187_E11.6) OS=Oryza sativa subsp. japonica
GN=OJ1593_C11.20 PE=4 SV=1
Length = 1447
Score = 151 bits (381), Expect(2) = 1e-42
Identities = 72/116 (62%), Positives = 84/116 (72%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DGS+ RYKARLVAKG+ Q YGIDYE+TFSP S+GW + Q+DV+NAF
Sbjct: 993 DGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAF 1052
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYM+QP GYED P YVCKL KALYGLKQ PRAW++R+ LY LGF
Sbjct: 1053 LHGFLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGF 1108
Score = 45.4 bits (106), Expect(2) = 1e-42
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L +GF + D SL+ + I+ + IYVDD+IV + + + LK+EF +KDL
Sbjct: 1103 LYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDL 1162
Query: 510 GEL 518
G+L
Sbjct: 1163 GDL 1165
>tr|Q0J292|Q0J292_ORYSJ Os09g0368000 protein OS=Oryza sativa subsp.
japonica GN=Os09g0368000 PE=4 SV=1
Length = 1101
Score = 147 bits (372), Expect(2) = 1e-42
Identities = 71/116 (61%), Positives = 83/116 (71%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DG++ RYKARLVAKG+ Q YGIDYE+TFSP SKGW L Q+DV+NAF
Sbjct: 640 DGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAF 699
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYM QP G+ED +PH+VCKL KALYGLKQ PRAW +R+ L LGF
Sbjct: 700 LHGYLEEEVYMLQPPGFEDPANPHFVCKLDKALYGLKQAPRAWFSRLSKKLVDLGF 755
Score = 48.9 bits (115), Expect(2) = 1e-42
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L+ +GF + AD SL+ + I+ + +YVDD+IV +E + LK EF +KDL
Sbjct: 750 LVDLGFQGSKADTSLFFSNKGGIIIFVLVYVDDIIVASSSERATTALLQDLKGEFALKDL 809
Query: 510 GEL 518
G+L
Sbjct: 810 GDL 812
>tr|Q8H7X8|Q8H7X8_ORYSJ Putative gag-pol polyprotein (Retrotransposon
protein, putative, Ty1-copia subclass) OS=Oryza sativa
subsp. japonica GN=OJ1607A12.20 PE=4 SV=1
Length = 1247
Score = 150 bits (380), Expect(2) = 2e-42
Identities = 72/116 (62%), Positives = 84/116 (72%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DGS+ RYKARLVAKG+ Q YGIDYE+TFSP SKGW + Q+DV+NAF
Sbjct: 793 DGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAF 852
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYM+QP GYED P YVCKL KALYGLKQ PRAW++R+ LY +GF
Sbjct: 853 LHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGF 908
Score = 45.4 bits (106), Expect(2) = 2e-42
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L +GF + AD SL+ + + I+ + IYVDD+IV + + + L++EF +KDL
Sbjct: 903 LYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDL 962
Query: 510 GEL 518
G+L
Sbjct: 963 GDL 965
>tr|Q0JHK2|Q0JHK2_ORYSJ Os01g0858800 protein OS=Oryza sativa subsp.
japonica GN=Os01g0858800 PE=4 SV=1
Length = 741
Score = 150 bits (380), Expect(2) = 2e-42
Identities = 72/116 (62%), Positives = 84/116 (72%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DGS+ RYKARLVAKG+ Q YGIDYE+TFSP SKGW + Q+DV+NAF
Sbjct: 517 DGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAF 576
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYM+QP GYED P YVCKL KALYGLKQ PRAW++R+ LY +GF
Sbjct: 577 LHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGF 632
Score = 45.4 bits (106), Expect(2) = 2e-42
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L +GF + AD SL+ + + I+ + IYVDD+IV + + + L++EF +KDL
Sbjct: 627 LYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLQDLQKEFALKDL 686
Query: 510 GEL 518
G+L
Sbjct: 687 GDL 689
>tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027864 PE=4 SV=1
Length = 1300
Score = 139 bits (349), Expect(2) = 3e-42
Identities = 63/116 (54%), Positives = 81/116 (69%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DGS+ R+KA LVA+G++Q YG+DY+ETFSP +K W L+QMDV+NAF
Sbjct: 839 DGSIERHKAXLVARGFSQQYGLDYDETFSPVXKLTTVRVLLALAANKDWDLWQMDVKNAF 898
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG+L E+YM QP G++ HP YVCKL+KALYGLKQ PRAW+ +I L G+
Sbjct: 899 LHGELDREIYMNQPMGFQSQGHPEYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGY 954
Score = 56.6 bits (135), Expect(2) = 3e-42
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L G+ + AD SL+V+ N + I+ +YVDDLI+ GD+ EI K L F+MK+L
Sbjct: 949 LTQSGYSVTPADSSLFVKANGGKLAIVLVYVDDLIITGDDVEEIFRTKENLSVRFEMKEL 1008
Query: 510 GEL 518
G+L
Sbjct: 1009 GQL 1011
>tr|Q6F356|Q6F356_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
japonica GN=OJ1268_B08.5 PE=4 SV=1
Length = 1256
Score = 151 bits (382), Expect(2) = 4e-42
Identities = 73/116 (62%), Positives = 84/116 (72%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DGS+ RYKARLVAKG+ Q YGIDYE+TFSP S+GW L Q+DV+NAF
Sbjct: 802 DGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAF 861
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYM+QP GYED HP YVCKL KALYGLKQ PRAW+A++ L LGF
Sbjct: 862 LHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGF 917
Score = 43.5 bits (101), Expect(2) = 4e-42
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = +3
Query: 339 IGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDLGEL 518
+GF + AD SL+ + I+ + +YVDD+IV + + + L+++F +KDLG+L
Sbjct: 915 LGFQGSKADTSLFFYNKGGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDL 974
>tr|Q8W0X9|Q8W0X9_MAIZE Putative copia-like retrotransposon Hopscotch
polyprotein OS=Zea mays GN=Z178A11.9 PE=4 SV=1
Length = 1313
Score = 147 bits (371), Expect(2) = 1e-41
Identities = 72/116 (62%), Positives = 83/116 (71%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DGS+ RYKARLVAKGY Q YGIDY++TFSP S+GW L Q+DV+NAF
Sbjct: 859 DGSLDRYKARLVAKGYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAF 918
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYMQQP GYED +YVCKL KALYGLKQ PRAW++R+ L LGF
Sbjct: 919 LHGVLEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGF 974
Score = 46.2 bits (108), Expect(2) = 1e-41
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L+S+GF + AD SL+ + + + + +YVDD+IV + + L +EF +KDL
Sbjct: 969 LLSLGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDL 1028
Query: 510 GEL 518
G+L
Sbjct: 1029 GDL 1031
>tr|Q53MM3|Q53MM3_ORYSJ Retrotransposon protein, putative, Ty1-copia
sub-class OS=Oryza sativa subsp. japonica
GN=LOC_Os11g07980 PE=4 SV=1
Length = 1621
Score = 146 bits (369), Expect(2) = 1e-41
Identities = 71/116 (61%), Positives = 82/116 (70%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DG++ RYKARLVAKG+ Q YGIDYE+TFSP SKGW L Q+DV+NAF
Sbjct: 721 DGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAF 780
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYM QP G+ED PH+VCKL KALYGLKQ PRAW +R+ L LGF
Sbjct: 781 LHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 836
Score = 46.6 bits (109), Expect(2) = 1e-41
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L+ +GF + AD SL+ + + + + +YVDD+IV +E + LK EF +KDL
Sbjct: 831 LMDLGFKGSKADTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQNLKGEFALKDL 890
Query: 510 GEL 518
GEL
Sbjct: 891 GEL 893
>tr|Q2QQL7|Q2QQL7_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g30600 PE=4 SV=2
Length = 1478
Score = 146 bits (369), Expect(2) = 2e-41
Identities = 71/116 (61%), Positives = 82/116 (70%)
Frame = +1
Query: 1 DGSVSRYKARLVAKGYAQTYGIDYEETFSPXXXXXXXXXXXXXXXSKGWLLYQMDVRNAF 180
DG++ RYKARLVAKG+ Q YGIDYE+TFSP SKGW L Q+DV+NAF
Sbjct: 992 DGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAF 1051
Query: 181 LHGDLQEEVYMQQPQGYEDVRHPHYVCKLKKALYGLKQVPRAWHARIVACLYPLGF 348
LHG L+EEVYM QP G+ED PH+VCKL KALYGLKQ PRAW +R+ L LGF
Sbjct: 1052 LHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 1107
Score = 46.2 bits (108), Expect(2) = 2e-41
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +3
Query: 330 LISIGFHMADADHSLYVRDNENGIVIICIYVDDLIVGGDNETEIVHVKTLLKQEFDMKDL 509
L+ +GF + AD SL+ + + + + +YVDD+IV +E + LK EF +KDL
Sbjct: 1102 LMDLGFKGSKADTSLFFLNKGDITMFVLVYVDDIIVASSSERATAALLQDLKGEFALKDL 1161
Query: 510 GEL 518
GEL
Sbjct: 1162 GEL 1164
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