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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918998
Clone id YMU001_000119_H10
Library
Length 266
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAGAGAGAGAGTATTTATTTCAACCCGTCGACTTGCTTTCTAAAATCT
GGACTAAGCATGCGCCAATGTAAATCCTCCCGAAGATACTTTACAAGATCACTCTCTATT
TCCTGAACCTGTTCCAGCCTCGGCTCTTCAAACTTTAGTTTTCGAGATATTGATCTTTCA
CGCTCCTCTTTGTTTGAATCCTTCAGATTAAAGAGGGCCTGTCCCTGCACTGCTGCATCT
TGGGCCGCAACAGCAGCAGCTTGCTT
■■Homology search results ■■ -
sp_hit_id Q16643
Definition sp|Q16643|DREB_HUMAN Drebrin OS=Homo sapiens
Align length 35
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918998|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_H10.
         (266 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q16643|DREB_HUMAN Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4         30   3.8  
sp|Q07266|DREB_RAT Drebrin OS=Rattus norvegicus GN=Dbn1 PE=2 SV=3      30   5.0  
sp|Q9QXS6|DREB_MOUSE Drebrin OS=Mus musculus GN=Dbn1 PE=1 SV=4         30   5.0  
sp|P56916|GSC2_MOUSE Homeobox protein goosecoid-2 OS=Mus musculu...    29   8.5  
sp|O15499|GSC2_HUMAN Homeobox protein goosecoid-2 OS=Homo sapien...    29   8.5  

>sp|Q16643|DREB_HUMAN Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4
          Length = 649

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/35 (31%), Positives = 25/35 (71%)
 Frame = -1

Query: 191 KEERERSISRKLKFEEPRLEQVQEIESDLVKYLRE 87
           +EER++++  +L+FE+ R+EQ ++ + +  +  RE
Sbjct: 193 EEERKKALDERLRFEQERMEQERQEQEERERRYRE 227


>sp|Q07266|DREB_RAT Drebrin OS=Rattus norvegicus GN=Dbn1 PE=2 SV=3
          Length = 707

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/35 (31%), Positives = 25/35 (71%)
 Frame = -1

Query: 191 KEERERSISRKLKFEEPRLEQVQEIESDLVKYLRE 87
           +EER++++  +L+FE+ R+EQ ++ + +  +  RE
Sbjct: 193 EEERKKALDARLRFEQERMEQERQEQEERERRYRE 227


>sp|Q9QXS6|DREB_MOUSE Drebrin OS=Mus musculus GN=Dbn1 PE=1 SV=4
          Length = 706

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/35 (31%), Positives = 25/35 (71%)
 Frame = -1

Query: 191 KEERERSISRKLKFEEPRLEQVQEIESDLVKYLRE 87
           +EER++++  +L+FE+ R+EQ ++ + +  +  RE
Sbjct: 193 EEERKKALDARLRFEQERMEQERQEQEERERRYRE 227


>sp|P56916|GSC2_MOUSE Homeobox protein goosecoid-2 OS=Mus musculus
           GN=Gsc2 PE=2 SV=1
          Length = 198

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 264 ASCCCCGPRCSSAGT 220
           A CCCC PR ++ GT
Sbjct: 62  ACCCCCNPRAATRGT 76


>sp|O15499|GSC2_HUMAN Homeobox protein goosecoid-2 OS=Homo sapiens
           GN=GSC2 PE=2 SV=1
          Length = 205

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 264 ASCCCCGPRCSSAG 223
           A CCCCGPR +  G
Sbjct: 65  ACCCCCGPRAAPCG 78
tr_hit_id Q8S912
Definition tr|Q8S912|Q8S912_TOBAC Microtubule bundling polypeptide TMBP200 OS=Nicotiana tabacum
Align length 62
Score (bit) 92.8
E-value 8.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918998|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_H10.
         (266 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8S912|Q8S912_TOBAC Microtubule bundling polypeptide TMBP200 ...    93   8e-18
tr|A7R7R5|A7R7R5_VITVI Chromosome undetermined scaffold_1975, wh...    91   4e-17
tr|A7R709|A7R709_VITVI Chromosome undetermined scaffold_1525, wh...    91   4e-17
tr|A4Q7P8|A4Q7P8_MEDTR VHS OS=Medicago truncatula GN=MtrDRAFT_AC...    89   8e-17
tr|Q9ZQN6|Q9ZQN6_ARATH Similar to ch-TOG protein from Homo sapie...    87   4e-16
tr|Q94FN2|Q94FN2_ARATH Microtubule organization 1 protein (MOR1/...    87   4e-16
tr|Q5N749|Q5N749_ORYSJ Putative microtubule bundling polypeptide...    75   1e-12
tr|B8ABA5|B8ABA5_ORYSI Putative uncharacterized protein OS=Oryza...    75   1e-12
tr|A2ZYZ0|A2ZYZ0_ORYSJ Putative uncharacterized protein OS=Oryza...    75   1e-12
tr|A9SCU9|A9SCU9_PHYPA Predicted protein OS=Physcomitrella paten...    75   2e-12
tr|Q8DTD7|Q8DTD7_STRMU Putative uncharacterized protein OS=Strep...    33   9.2  
tr|Q9VU34|Q9VU34_DROME MICAL-like OS=Drosophila melanogaster GN=...    33   9.2  
tr|B4QIY1|B4QIY1_DROSI GD12682 OS=Drosophila simulans GN=GD12682...    33   9.2  
tr|B4PHA9|B4PHA9_DROYA GE20082 OS=Drosophila yakuba GN=GE20082 P...    33   9.2  
tr|B4HGN1|B4HGN1_DROSE GM24615 OS=Drosophila sechellia GN=GM2461...    33   9.2  
tr|B3NCY0|B3NCY0_DROER GG13789 OS=Drosophila erecta GN=GG13789 P...    33   9.2  

>tr|Q8S912|Q8S912_TOBAC Microtubule bundling polypeptide TMBP200
            OS=Nicotiana tabacum PE=2 SV=1
          Length = 2029

 Score = 92.8 bits (229), Expect = 8e-18
 Identities = 42/62 (67%), Positives = 54/62 (87%)
 Frame = -1

Query: 215  LFNLKDSNKEERERSISRKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVDG 36
            L N+KDS+K ERER + R+ KFEEPRLEQ+Q++ESDL+KY REDLH R+LS DF+KQVDG
Sbjct: 1142 LINVKDSHKGERERIVVRRFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQVDG 1201

Query: 35   LK 30
            ++
Sbjct: 1202 IE 1203


>tr|A7R7R5|A7R7R5_VITVI Chromosome undetermined scaffold_1975, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010191001 PE=4 SV=1
          Length = 1048

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 41/62 (66%), Positives = 54/62 (87%)
 Frame = -1

Query: 215 LFNLKDSNKEERERSISRKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVDG 36
           L N+KDSNKE+RER + R+ KFEE R+EQ+Q++E+DL+KYLREDL  R+LS DF+KQVDG
Sbjct: 484 LLNIKDSNKEDRERMVVRRFKFEELRIEQIQDLETDLMKYLREDLQRRLLSTDFKKQVDG 543

Query: 35  LK 30
           L+
Sbjct: 544 LE 545


>tr|A7R709|A7R709_VITVI Chromosome undetermined scaffold_1525, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008514001 PE=4 SV=1
          Length = 2712

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 41/62 (66%), Positives = 54/62 (87%)
 Frame = -1

Query: 215 LFNLKDSNKEERERSISRKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVDG 36
           L N+KDSNKE+RER + R+ KFEE R+EQ+Q++E+DL+KYLREDL  R+LS DF+KQVDG
Sbjct: 484 LLNIKDSNKEDRERMVVRRFKFEELRIEQIQDLETDLMKYLREDLQRRLLSTDFKKQVDG 543

Query: 35  LK 30
           L+
Sbjct: 544 LE 545


>tr|A4Q7P8|A4Q7P8_MEDTR VHS OS=Medicago truncatula
           GN=MtrDRAFT_AC183502g21v2 PE=4 SV=1
          Length = 645

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 38/62 (61%), Positives = 54/62 (87%)
 Frame = -1

Query: 215 LFNLKDSNKEERERSISRKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVDG 36
           L N+KDSNKEERER + R+ KF++PR+EQ+Q++E++++KY REDLH R+LS DF+KQV G
Sbjct: 573 LLNIKDSNKEERERLVVRRFKFQDPRIEQIQDLENEMMKYFREDLHKRLLSADFKKQVGG 632

Query: 35  LK 30
           L+
Sbjct: 633 LE 634


>tr|Q9ZQN6|Q9ZQN6_ARATH Similar to ch-TOG protein from Homo sapiens
           OS=Arabidopsis thaliana GN=At2g35630 PE=2 SV=2
          Length = 1611

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 39/62 (62%), Positives = 53/62 (85%)
 Frame = -1

Query: 215 LFNLKDSNKEERERSISRKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVDG 36
           L N KDSNKE+RER + R++KFEE R EQ+Q++E+D++K+ REDL  R+LSPDF+KQVDG
Sbjct: 765 LLNTKDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDG 824

Query: 35  LK 30
           L+
Sbjct: 825 LE 826


>tr|Q94FN2|Q94FN2_ARATH Microtubule organization 1 protein (MOR1/GEM1)
            OS=Arabidopsis thaliana GN=At2g35630 PE=2 SV=1
          Length = 1978

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 39/62 (62%), Positives = 53/62 (85%)
 Frame = -1

Query: 215  LFNLKDSNKEERERSISRKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVDG 36
            L N KDSNKE+RER + R++KFEE R EQ+Q++E+D++K+ REDL  R+LSPDF+KQVDG
Sbjct: 1132 LLNTKDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDG 1191

Query: 35   LK 30
            L+
Sbjct: 1192 LE 1193


>tr|Q5N749|Q5N749_ORYSJ Putative microtubule bundling polypeptide
            TMBP200 (Os01g0816400 protein) OS=Oryza sativa subsp.
            japonica GN=OSJNBa0085D07.49-1 PE=4 SV=1
          Length = 1997

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 34/63 (53%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
 Frame = -1

Query: 215  LFNLKDSNKEERERSIS-RKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVD 39
            LFN+KDSNKEERER +  RK KFEEPR EQ+ E++ +L ++ RED+  R+ + DF++Q+D
Sbjct: 1138 LFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKRQID 1197

Query: 38   GLK 30
            G++
Sbjct: 1198 GIE 1200


>tr|B8ABA5|B8ABA5_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_04204 PE=4 SV=1
          Length = 1941

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 34/63 (53%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
 Frame = -1

Query: 215  LFNLKDSNKEERERSIS-RKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVD 39
            LFN+KDSNKEERER +  RK KFEEPR EQ+ E++ +L ++ RED+  R+ + DF++Q+D
Sbjct: 1139 LFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKRQID 1198

Query: 38   GLK 30
            G++
Sbjct: 1199 GIE 1201


>tr|A2ZYZ0|A2ZYZ0_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_003762 PE=4 SV=1
          Length = 1966

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 34/63 (53%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
 Frame = -1

Query: 215  LFNLKDSNKEERERSIS-RKLKFEEPRLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVD 39
            LFN+KDSNKEERER +  RK KFEEPR EQ+ E++ +L ++ RED+  R+ + DF++Q+D
Sbjct: 1108 LFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKRQID 1167

Query: 38   GLK 30
            G++
Sbjct: 1168 GIE 1170


>tr|A9SCU9|A9SCU9_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_106216 PE=4 SV=1
          Length = 1974

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 37/62 (59%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = -1

Query: 215  LFNLKDSNKEERERSISRKLKFEEP-RLEQVQEIESDLVKYLREDLHWRMLSPDFRKQVD 39
            LFNLKDS+K ERER  +RK KF++  R EQ  +IE D+VK+ REDL  ++LSPDF+KQ++
Sbjct: 1144 LFNLKDSHKSERERLNARKYKFDDAARREQPHDIEVDIVKFFREDLQKKLLSPDFKKQIE 1203

Query: 38   GL 33
            GL
Sbjct: 1204 GL 1205