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NBDC - LSDB Archive
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BP918931
Clone id YMU001_000119_B11
Library
Length 344
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATCCACAGGTTTTCTACCGAAATTCTTTAATTTTGACAGATCTTCTCGGCTATAGTTAA
GCAAATCCGCAATTGTGTATATTTCGGCCCTTTTAAGACAATTAAAAGCTCTGGCAGGTA
ATTCCAATTGGTCAATAAACCTATTTTCTAAAACCCTTTCTTCCAAATTATTCGTATCAC
CAAATTGAGGTTGTAAAGATGGTGATTTCGTCAAATCAAGAGAATCTTCGCCATTTTCGA
AGAGAGATACGTCTCCGCCCCTTACATACAAGAAGGTGGTTGGCAAGTCCATGAGTTTTT
CAGAAGCTTTCCTAAGTGCTTCGTGTGGTGTCGGACTGCCATTA
■■Homology search results ■■ -
sp_hit_id Q85FJ1
Definition sp|Q85FJ1|RPOA_ADICA DNA-directed RNA polymerase subunit alpha OS=Adiantum capillus-veneris
Align length 114
Score (bit) 220.0
E-value 2.0e-57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918931|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_B11.
         (344 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FJ1|RPOA_ADICA DNA-directed RNA polymerase subunit alpha O...   220   2e-57
sp|Q9BBN0|RPOA_MARQU DNA-directed RNA polymerase subunit alpha O...   116   4e-26
sp|Q60F88|RPOA_TAKLE DNA-directed RNA polymerase subunit alpha O...    94   2e-19
sp|A2T365|RPOA_ANGEV DNA-directed RNA polymerase subunit alpha O...    91   1e-18
sp|Q85A01|RPOA_ANTFO DNA-directed RNA polymerase subunit alpha O...    89   7e-18
sp|Q8WHZ1|RPOA_PSINU DNA-directed RNA polymerase subunit alpha O...    88   2e-17
sp|Q6EW20|RPOA_NYMAL DNA-directed RNA polymerase subunit alpha O...    86   4e-17
sp|Q1KXS7|RPOA_HELAN DNA-directed RNA polymerase subunit alpha O...    84   2e-16
sp|P06270|RPOA_MARPO DNA-directed RNA polymerase subunit alpha O...    83   4e-16
sp|Q7YJU6|RPOA_CALFG DNA-directed RNA polymerase subunit alpha O...    83   4e-16
sp|Q332U5|RPOA_LACSA DNA-directed RNA polymerase subunit alpha O...    82   6e-16
sp|P41629|RPOA_PINTH DNA-directed RNA polymerase subunit alpha O...    82   8e-16
sp|Q0G9T0|RPOA_DAUCA DNA-directed RNA polymerase subunit alpha O...    82   8e-16
sp|A6H5L3|RPOA_CYCTA DNA-directed RNA polymerase subunit alpha O...    82   8e-16
sp|A8W3F3|RPOA_CUSEX DNA-directed RNA polymerase subunit alpha O...    82   1e-15
sp|Q2L938|RPOA_GOSHI DNA-directed RNA polymerase subunit alpha O...    81   1e-15
sp|A4QJN1|RPOA_AETGR DNA-directed RNA polymerase subunit alpha O...    81   1e-15
sp|A1XGS0|RPOA_RANMC DNA-directed RNA polymerase subunit alpha O...    80   2e-15
sp|A4QKW3|RPOA_CRUWA DNA-directed RNA polymerase subunit alpha O...    80   4e-15
sp|Q85X01|RPOA_PINKO DNA-directed RNA polymerase subunit alpha O...    79   7e-15
sp|P60315|RPOA_PHYPA DNA-directed RNA polymerase subunit alpha, ...    79   7e-15
sp|A4QJW3|RPOA_OLIPU DNA-directed RNA polymerase subunit alpha O...    79   7e-15
sp|Q33C00|RPOA_NICTO DNA-directed RNA polymerase subunit alpha O...    79   7e-15
sp|A7Y3I1|RPOA_IPOPU DNA-directed RNA polymerase subunit alpha O...    79   7e-15
sp|Q06GM8|RPOA_PIPCE DNA-directed RNA polymerase subunit alpha O...    79   9e-15
sp|Q8SKY1|RPOA_CUSRE DNA-directed RNA polymerase subunit alpha O...    79   9e-15
sp|P06269|RPOA_TOBAC DNA-directed RNA polymerase subunit alpha O...    78   1e-14
sp|Q3C1M3|RPOA_NICSY DNA-directed RNA polymerase subunit alpha O...    78   1e-14
sp|A4QLM6|RPOA_LOBMA DNA-directed RNA polymerase subunit alpha O...    78   1e-14
sp|A0ZZ67|RPOA_GOSBA DNA-directed RNA polymerase subunit alpha O...    78   1e-14

>sp|Q85FJ1|RPOA_ADICA DNA-directed RNA polymerase subunit alpha
           OS=Adiantum capillus-veneris GN=rpoA PE=2 SV=2
          Length = 345

 Score =  220 bits (560), Expect = 2e-57
 Identities = 111/114 (97%), Positives = 111/114 (97%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           NGS TPHEALRKASEKLMDL TTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL
Sbjct: 207 NGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 266

Query: 163 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
           EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRK VD
Sbjct: 267 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKSVD 320


>sp|Q9BBN0|RPOA_MARQU DNA-directed RNA polymerase subunit alpha
           OS=Marsilea quadrifolia GN=rpoA PE=2 SV=2
          Length = 341

 Score =  116 bits (290), Expect = 4e-26
 Identities = 63/114 (55%), Positives = 80/114 (70%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           NGS TP EA+ KAS+  +DL + FL+ +  D+  FE+  DS  L K  S   +  D +  
Sbjct: 206 NGSLTPTEAISKASKSSIDLLSPFLHTKHEDIPDFESNRDSSSLMKFSS---RVDDVDKS 262

Query: 163 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
           E    +N FIDQLELPARAFNCLKRAEI+TI+DLL+YSR+DL KLK+FG+K VD
Sbjct: 263 EGDFFKNTFIDQLELPARAFNCLKRAEIHTISDLLSYSRDDLLKLKSFGKKSVD 316


>sp|Q60F88|RPOA_TAKLE DNA-directed RNA polymerase subunit alpha
           OS=Takakia lepidozioides GN=rpoA PE=2 SV=2
          Length = 341

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 3/117 (2%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDV--SLFENGEDSLDLTKSPSLQPQFGDTN 170
           NGS TP EAL +AS  L++L   FL+    +    L    E ++    SPSL     D +
Sbjct: 206 NGSVTPKEALYEASRSLINLFIPFLHAEKKEFIYGLKNTYESNMSYFSSPSLS---ADID 262

Query: 169 NLEERV-LENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
            + + V  ++ FIDQLELPARA+NCLKR   +TI+DLLNYS++DL K+KNFG+K V+
Sbjct: 263 EMTKGVTFKHIFIDQLELPARAYNCLKRVNAHTISDLLNYSQDDLMKIKNFGKKSVE 319


>sp|A2T365|RPOA_ANGEV DNA-directed RNA polymerase subunit alpha
           OS=Angiopteris evecta GN=rpoA PE=3 SV=1
          Length = 341

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDV--SLFENGEDSLDLTKSPSLQPQFGDTN 170
           +GS TP EAL +AS  L+DL   FL+    ++     E  E + ++  S S+        
Sbjct: 206 DGSLTPKEALYEASRNLIDLFLPFLHTEEEEIISDRDEKSESNGNILLSNSISTDID--R 263

Query: 169 NLEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
             +E   ++ FIDQLELPARA+NCLK+ +++TI+DLL YS++DL K+KNFG+K VD
Sbjct: 264 MAKEVAFKHIFIDQLELPARAYNCLKKVDVHTISDLLKYSQDDLRKIKNFGKKSVD 319


>sp|Q85A01|RPOA_ANTFO DNA-directed RNA polymerase subunit alpha
           OS=Anthoceros formosae GN=rpoA PE=2 SV=1
          Length = 340

 Score = 89.0 bits (219), Expect = 7e-18
 Identities = 49/113 (43%), Positives = 74/113 (65%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           NGS TP EALR+AS+ L++L    L+ +    +     +D  ++ +S       G+    
Sbjct: 206 NGSLTPKEALREASQSLINLFIPLLHEKKERENRKLENKDEYNVLRSCFSLTNIGEVR-- 263

Query: 163 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPV 5
           +E   ++ FIDQLELPARA+N LK+ +++TI+DLLNYS+EDL K+KNFG+K +
Sbjct: 264 KEISFKHIFIDQLELPARAYNGLKKVDVHTISDLLNYSQEDLMKIKNFGKKSI 316


>sp|Q8WHZ1|RPOA_PSINU DNA-directed RNA polymerase subunit alpha
           OS=Psilotum nudum GN=rpoA PE=3 SV=1
          Length = 340

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 49/114 (42%), Positives = 70/114 (61%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           NGS TP  AL +AS  L+DL   FL +   + S+ E   + L++   PS           
Sbjct: 206 NGSLTPGAALSEASRDLIDLFIIFLNMEKEE-SIKEIENNELNIKNFPSTSISVDIDRMA 264

Query: 163 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
           +E   +  FIDQLELPARA+NCLK+ +++T++DLL Y++ DL K+KNFG K V+
Sbjct: 265 KEVAFKQIFIDQLELPARAYNCLKKMQVHTVSDLLKYTQYDLKKVKNFGNKSVE 318


>sp|Q6EW20|RPOA_NYMAL DNA-directed RNA polymerase subunit alpha
           OS=Nymphaea alba GN=rpoA PE=3 SV=1
          Length = 341

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 49/108 (45%), Positives = 67/108 (62%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           NGS TP EAL +AS  L+DL   FL+    D++   N ED+L     P      G  N  
Sbjct: 206 NGSLTPKEALYEASRNLIDLFIPFLHAEEQDIN--RNMEDNLKRASVPFFAFDDGLDNIK 263

Query: 163 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNF 20
            E +L+  FIDQLELP R +NCLKR+ I+T+ DLL+ S+EDL ++++F
Sbjct: 264 REIILKRIFIDQLELPPRTYNCLKRSNIHTLLDLLSKSQEDLMRIEHF 311


>sp|Q1KXS7|RPOA_HELAN DNA-directed RNA polymerase subunit alpha
           OS=Helianthus annuus GN=rpoA PE=3 SV=2
          Length = 335

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGD---- 176
           NGS TP EAL +AS  L+DL   FL+ +  ++SL    ED+  +   P     F D    
Sbjct: 204 NGSLTPKEALHEASRNLIDLLIPFLHTKEENLSL----EDNQHIVPLPPFT--FYDKLAK 257

Query: 175 -TNNLEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNF 20
            T N ++  L++ FIDQ ELP R +NCLKR+ IYT+ DLLN S+EDL K+++F
Sbjct: 258 LTKNKKKMALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHF 310


>sp|P06270|RPOA_MARPO DNA-directed RNA polymerase subunit alpha
           OS=Marchantia polymorpha GN=rpoA PE=3 SV=1
          Length = 340

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 45/114 (39%), Positives = 68/114 (59%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           +GS TP EAL +AS  L+DL    +     + +      +  +++  P            
Sbjct: 206 DGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKTNESNMSYFPFQSVSLDIEKMT 265

Query: 163 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
           ++   ++ FIDQLELPARA+NCLK+  ++TIADLL+YS +DL K+KNFG+K V+
Sbjct: 266 KDVAFKHIFIDQLELPARAYNCLKKVNVHTIADLLHYSEDDLIKIKNFGKKSVE 319


>sp|Q7YJU6|RPOA_CALFG DNA-directed RNA polymerase subunit alpha
           OS=Calycanthus floridus var. glaucus GN=rpoA PE=3 SV=1
          Length = 340

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 3/111 (2%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLD-LTKSP-SLQPQFGDTN 170
           NGS TP EAL +AS  L+DL   FL+    D+ L  N ED+ +  T SP +L  + G+  
Sbjct: 206 NGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHL--NLEDNQNRFTVSPFTLHDRLGNIR 263

Query: 169 -NLEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNF 20
            N +E  L+  FIDQ ELP R +NCLKR+ I+T+ DLLN S+EDL ++++F
Sbjct: 264 KNKKEIALKCIFIDQSELPTRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHF 314
tr_hit_id Q5EG69
Definition tr|Q5EG69|Q5EG69_9BRYO RNA polymerase alpha subunit OS=Sphagnum fimbriatum
Align length 115
Score (bit) 102.0
E-value 7.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918931|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_B11.
         (344 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5EG69|Q5EG69_9BRYO RNA polymerase alpha subunit OS=Sphagnum ...   102   7e-21
tr|Q5EFY8|Q5EFY8_9BRYO RNA polymerase alpha subunit OS=Oedipodiu...    96   7e-19
tr|Q60F85|Q60F85_9BRYO DNA-dependent RNA polymerase alpha subuni...    95   2e-18
tr|Q5EFZ1|Q5EFZ1_9BRYO RNA polymerase alpha subunit OS=Buxbaumia...    92   1e-17
tr|Q2KKK3|Q2KKK3_9BRYO RNA polymerase alpha subunit (Fragment) O...    91   3e-17
tr|B7ZIR8|B7ZIR8_KETDA RNA polymerase alpha chain OS=Keteleeria ...    91   3e-17
tr|Q5EFY2|Q5EFY2_9BRYO RNA polymerase alpha subunit OS=Polytrich...    90   6e-17
tr|Q5EFY4|Q5EFY4_9BRYO RNA polymerase alpha subunit OS=Dendrolig...    87   3e-16
tr|A9SHY0|A9SHY0_PHYPA Predicted protein OS=Physcomitrella paten...    84   5e-15
tr|A9CP51|A9CP51_PHYPA DNA-directed RNA polymerase alpha chain O...    84   5e-15
tr|B2LMM5|B2LMM5_GUIAB RNA polymerase alpha subunit OS=Guizotia ...    83   6e-15
tr|Q4QZ04|Q4QZ04_CHRMO DNA-directed RNA polymerase alpha chain O...    83   8e-15
tr|B0YPQ7|B0YPQ7_ANEMR RNA polymerase alpha subunit OS=Aneura mi...    82   1e-14
tr|A9QB58|A9QB58_9SPER RNA polymerase alpha subunit (Fragment) O...    82   1e-14
tr|Q4FGA3|Q4FGA3_GINBI RNA polymerase alpha chain (Fragment) OS=...    81   3e-14
tr|Q4FGA1|Q4FGA1_RANMC RNA polymerase alpha chain (Fragment) OS=...    80   4e-14
tr|A9QC95|A9QC95_TRACE RNA polymerase alpha subunit (Fragment) O...    80   5e-14
tr|Q4FGA2|Q4FGA2_NUPAD RNA polymerase alpha chain (RNA polymeras...    80   7e-14
tr|B0FIU7|B0FIU7_9ASTE RNA polymerase alpha subunit (Fragment) O...    80   7e-14
tr|A9T5L6|A9T5L6_PHYPA DNA-directed RNA polymerase alpha chain O...    79   1e-13
tr|B0FIU8|B0FIU8_CUSRE RNA polymerase alpha subunit (Fragment) O...    79   1e-13
tr|B0FIU6|B0FIU6_CUSJA RNA polymerase alpha subunit (Fragment) O...    78   2e-13
tr|A9QAY1|A9QAY1_9APIA RNA polymerase alpha subunit (Fragment) O...    78   2e-13
tr|Q5IBI2|Q5IBI2_9LAMI RNA polymerase alpha subunit (Fragment) O...    78   3e-13
tr|Q4FG99|Q4FG99_9ASPA RNA polymerase alpha chain (Fragment) OS=...    77   3e-13
tr|B5AH30|B5AH30_9ROSI RNA polymerase alpha subunit OS=Gonystylu...    77   3e-13
tr|Q4FGA4|Q4FGA4_ACOAM RNA polymerase alpha chain (Fragment) OS=...    77   6e-13
tr|A9QBM7|A9QBM7_MUSAC RNA polymerase alpha subunit (Fragment) O...    76   7e-13
tr|B1VKC7|B1VKC7_CRYJA RNA polymerase alpha subunit OS=Cryptomer...    76   1e-12
tr|B5LMQ5|B5LMQ5_CICAR RNA polymerase alpha subunit OS=Cicer ari...    75   1e-12

>tr|Q5EG69|Q5EG69_9BRYO RNA polymerase alpha subunit OS=Sphagnum
           fimbriatum GN=rpoA PE=4 SV=1
          Length = 338

 Score =  102 bits (255), Expect = 7e-21
 Identities = 56/115 (48%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           NGS TP EAL +AS  L+DL   FL+    +V   +N  ++L  + SPS        N +
Sbjct: 209 NGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNESNTLHFSSSPS-------ENKM 261

Query: 163 E-ERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
           E E   ++ FIDQLELPARA+NCLKR +++TI+DLL+YS++DL K+KNFG+K V+
Sbjct: 262 EKEMTFKHIFIDQLELPARAYNCLKRVDVHTISDLLSYSQDDLMKIKNFGKKSVE 316


>tr|Q5EFY8|Q5EFY8_9BRYO RNA polymerase alpha subunit OS=Oedipodium
           griffithianum GN=rpoA PE=4 SV=1
          Length = 340

 Score = 96.3 bits (238), Expect = 7e-19
 Identities = 54/115 (46%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDV-SLFENGEDSLDLTKSPSLQPQFGDTNN 167
           NGS TP EAL +AS  L+DL   FL+    ++ +  EN  +S +++   S  P       
Sbjct: 206 NGSITPKEALYEASRSLIDLFIPFLHAEKKEIINGLENKYESNNMSYFSSFSPLADRIT- 264

Query: 166 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
            +E   ++ FIDQLELPARA+NCLKR  ++TI+DLLNYS++DL K+KNFG+K V+
Sbjct: 265 -KEVTFKHIFIDQLELPARAYNCLKRVNVHTISDLLNYSQDDLMKIKNFGKKSVE 318


>tr|Q60F85|Q60F85_9BRYO DNA-dependent RNA polymerase alpha subunit
           OS=Sphagnum girgensohnii GN=rpoA PE=4 SV=1
          Length = 341

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLF---ENGEDSLDLTKSPSLQPQFGDT 173
           NGS TP EAL +AS  L+DL   FL+    +V      +N  ++L  + SPS        
Sbjct: 209 NGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHGLGNKNESNTLHFSSSPS-------E 261

Query: 172 NNLE-ERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
           N +E E   ++ FIDQLELPARA+NC KR +++TI+DLL+YS++DL K+KNFG+K V+
Sbjct: 262 NKMEKEMTFKHIFIDQLELPARAYNCPKRVDVHTISDLLSYSQDDLMKIKNFGKKSVE 319


>tr|Q5EFZ1|Q5EFZ1_9BRYO RNA polymerase alpha subunit OS=Buxbaumia
           aphylla GN=rpoA PE=4 SV=1
          Length = 340

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDV-SLFENGEDSLDLTKSPSLQPQFGDTNN 167
           NGS TP +AL +AS  L+DL   FL+    ++ +  EN     +++   S  P       
Sbjct: 206 NGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKLSNISYFSSFSPLADKIT- 264

Query: 166 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
            +E   ++ FIDQLELPARA+NCLKR  + T+ADLLNYS+EDL K+KNFG+K V+
Sbjct: 265 -KEVSFKHIFIDQLELPARAYNCLKRVNVNTLADLLNYSQEDLMKIKNFGKKSVE 318


>tr|Q2KKK3|Q2KKK3_9BRYO RNA polymerase alpha subunit (Fragment)
           OS=Polytrichadelphus purpureus GN=rpoA PE=4 SV=1
          Length = 165

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGD-VSLFENGEDSLDLTKSPSLQPQFGDTNN 167
           NGS TP EAL +AS  L DL   FL+    + +   +    S D++   S  P    +  
Sbjct: 31  NGSITPKEALYEASRSLXDLFIPFLHTEKKETIDGLKTEYKSNDMSDFSSFSPLANKST- 89

Query: 166 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
            +E   ++ FIDQLEL ARA+NCLKR  ++TI+DLLNYS++DL K+KNFG+K V+
Sbjct: 90  -KEITFKHIFIDQLELSARAYNCLKRVNVHTISDLLNYSQDDLMKIKNFGKKSVE 143


>tr|B7ZIR8|B7ZIR8_KETDA RNA polymerase alpha chain OS=Keteleeria
           davidiana GN=rpoA PE=4 SV=1
          Length = 336

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 49/115 (42%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           NG  TP EAL +AS  L+D    FL+    ++    N + S ++   P L     DT   
Sbjct: 206 NGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINNRKGSSNMPPFPLLHV-LTDTGET 264

Query: 163 EERV-LENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
           +E++  ++ FIDQLELP R +NCL+RA I+T+ DLLNYSREDL ++++FG++ V+
Sbjct: 265 KEKIAFQHIFIDQLELPPRTYNCLRRANIHTLLDLLNYSREDLMRMEHFGKESVE 319


>tr|Q5EFY2|Q5EFY2_9BRYO RNA polymerase alpha subunit OS=Polytrichum
           pallidisetum GN=rpoA PE=4 SV=1
          Length = 338

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 53/114 (46%), Positives = 72/114 (63%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164
           NGS TP EAL +AS  L+DL   FL+    + ++        D++   S  P  G     
Sbjct: 206 NGSITPKEALYEASRSLIDLFIPFLHPEKKE-TIDRLKYTPNDISDFSSFSPVTGKLT-- 262

Query: 163 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
           +E   ++ FIDQLELPARA+NCLKR   +TI+DLLNYS++DL K+KNFG+K V+
Sbjct: 263 KEITFKHIFIDQLELPARAYNCLKRVNGHTISDLLNYSQDDLMKIKNFGKKSVE 316


>tr|Q5EFY4|Q5EFY4_9BRYO RNA polymerase alpha subunit
           OS=Dendroligotrichum dendroides GN=rpoA PE=4 SV=1
          Length = 340

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGD-VSLFENGEDSLDLTKSPSLQPQFGDTNN 167
           NGS TP EAL +AS  L+DL   FL+    + ++  +    S D++   S  P       
Sbjct: 206 NGSITPKEALYEASRSLIDLFIPFLHTEKKETINGLKTEYKSNDMSDFSSFSPLADKLT- 264

Query: 166 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
            +E   ++ FIDQLELPARA+NCLKR  ++ I+DLLNY ++D  K+KNFG+K V+
Sbjct: 265 -KEIKFKHIFIDQLELPARAYNCLKRVNVHPISDLLNYXQDDFMKIKNFGKKSVE 318


>tr|A9SHY0|A9SHY0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_79650 PE=3 SV=1
          Length = 438

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 47/116 (40%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNN- 167
           NGS +P EAL +A+  L+DL    L +   +V    N  +  + +++ S+   F  +++ 
Sbjct: 307 NGSISPEEALIEAARSLIDL---LLPLLESEVIEVTNTTEKENGSRNISMLSSFLSSSDQ 363

Query: 166 -LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
             +E   ++ FIDQL+LPARA+NCLKRA I+T++DLL+Y+++DL ++KNFG+K V+
Sbjct: 364 ITKEVTYKHVFIDQLKLPARAYNCLKRANIHTVSDLLDYTQDDLMRIKNFGKKSVE 419


>tr|A9CP51|A9CP51_PHYPA DNA-directed RNA polymerase alpha chain
           OS=Physcomitrella patens GN=PpRpoA2 PE=2 SV=1
          Length = 525

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 47/116 (40%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
 Frame = -2

Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNN- 167
           NGS +P EAL +A+  L+DL    L +   +V    N  +  + +++ S+   F  +++ 
Sbjct: 394 NGSISPEEALIEAARSLIDL---LLPLLESEVIEVTNTTEKENGSRNISMLSSFLSSSDQ 450

Query: 166 -LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2
             +E   ++ FIDQL+LPARA+NCLKRA I+T++DLL+Y+++DL ++KNFG+K V+
Sbjct: 451 ITKEVTYKHVFIDQLKLPARAYNCLKRANIHTVSDLLDYTQDDLMRIKNFGKKSVE 506