BP918919
Clone id YMU001_000119_A06
Library
Length 291
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CATGACAAACTCTGCCAGAAAATGCCTTTCTCATGGATTCCGTAATCAGCATACATGCTG
TGCTCTTGCCTGCTCCTCCAATACCAAACATACCAAGCACTTTTGTATTTGCAATTCGCT
GGGATGGCAGAGCAGCATTGAACTTTGCCTGTAACTCCTTGCAAATACGTTCTCTGCCTT
GCACATGCAAGACACTGGACCTTACATCCGATGGCATTGTCTCCATGACTGACTTCAGTA
CCCGGTCTCTTAGACCAACGTCTCCTTCTCCTTGCTGTCTGGAGATGCTAT
■■Homology search results ■■ -
sp_hit_id P47804
Definition sp|P47804|RGR_HUMAN RPE-retinal G protein-coupled receptor OS=Homo sapiens
Align length 46
Score (bit) 32.0
E-value 0.97
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918919|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_A06.
(291 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P47804|RGR_HUMAN RPE-retinal G protein-coupled receptor OS=Ho... 32 0.97
sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47... 30 2.8
sp|P25941|AFSR_STRCO Regulatory protein afsR OS=Streptomyces coe... 30 2.8
sp|P47803|RGR_BOVIN RPE-retinal G protein-coupled receptor OS=Bo... 30 3.7
sp|P54891|RDRP_ACLSA RNA-directed RNA polymerase OS=Apple chloro... 30 4.8
sp|O06719|GERPC_BACSU Probable spore germination protein gerPC O... 30 4.8
sp|Q9CP98|RBSA1_PASMU Ribose import ATP-binding protein rbsA 1 O... 29 6.3
sp|Q4KKK8|METN1_PSEF5 Methionine import ATP-binding protein metN... 29 6.3
sp|Q65WJ1|ARAG_MANSM Arabinose import ATP-binding protein araG O... 29 6.3
sp|Q4W5N1|ABCAB_HUMAN Putative ATP-binding cassette sub-family A... 29 6.3
sp|Q9W7R3|TEN4_DANRE Teneurin-4 OS=Danio rerio GN=odz4 PE=2 SV=1 29 8.2
sp|Q9DER5|TEN2_CHICK Teneurin-2 OS=Gallus gallus GN=ODZ2 PE=2 SV=1 29 8.2
sp|Q03YJ6|RUVB_LEUMM Holliday junction ATP-dependent DNA helicas... 29 8.2
sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=... 29 8.2
sp|Q5YRD1|METN_NOCFA Methionine import ATP-binding protein metN ... 29 8.2
sp|Q5KVK2|METN_GEOKA Methionine import ATP-binding protein metN ... 29 8.2

>sp|P47804|RGR_HUMAN RPE-retinal G protein-coupled receptor OS=Homo
sapiens GN=RGR PE=1 SV=1
Length = 291

Score = 32.0 bits (71), Expect = 0.97
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2

Query: 23 CLSHGFRNQHTCCALACSSNT---KHTKHFCICNSLGWQSSIELCL 151
C +HGF+ T A CSS H+C + L W S++ L L
Sbjct: 88 CQAHGFQGFVTALASICSSAAIAWGRYHHYCTRSQLAWNSAVSLVL 133


>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250
OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1
Length = 843

Score = 30.4 bits (67), Expect = 2.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3

Query: 169 RICKE---LQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLI 44
R+C++ L S R ++LG+FG+GG GK+T LI
Sbjct: 152 RLCQQTVGLDTTLEKTWESLRKDENRMLGIFGMGGVGKTTLLTLI 196


>sp|P25941|AFSR_STRCO Regulatory protein afsR OS=Streptomyces
coelicolor GN=afsR PE=3 SV=2
Length = 993

Score = 30.4 bits (67), Expect = 2.8
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -3

Query: 214 PSDVRSSVLHVQGRERICKELQAKFNAALPSQRIANTKVLG---MFGIGGAGKSTACMLI 44
P+ + ++V GR +EL +AA S A+ +V+ + GIGG GK+T + +
Sbjct: 286 PAQLPATVSDFTGRAAFVRELSDVLSAA--SGESASGRVMAVSALAGIGGVGKTTLAVHV 343

Query: 43 TESMRKAF 20
R AF
Sbjct: 344 AHRARAAF 351


>sp|P47803|RGR_BOVIN RPE-retinal G protein-coupled receptor OS=Bos
taurus GN=RGR PE=2 SV=1
Length = 291

Score = 30.0 bits (66), Expect = 3.7
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2

Query: 23 CLSHGFRNQHTCCALACSSNT---KHTKHFCICNSLGWQSSIEL 145
C +HGF+ T A CSS HFC + L W +++ L
Sbjct: 88 CQAHGFQGFVTALASICSSAAVAWGRYHHFCTRSRLDWNTAVSL 131


>sp|P54891|RDRP_ACLSA RNA-directed RNA polymerase OS=Apple chlorotic
leaf spot virus (isolate apple) PE=4 SV=1
Length = 1885

Score = 29.6 bits (65), Expect = 4.8
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = -3

Query: 244 RVLKSVMETMPSDVRSSVLHVQGRERICKELQAKFNAALPSQRIANTKVLGMFGIGGAGK 65
R++K + T S++RS + ++G+ +E + + K+ G+FG G+GK
Sbjct: 1012 RMIKGINST--SEMRSFMSMIKGKS---EETRGDLFDRVQELNFMKVKIYGIFGFAGSGK 1066

Query: 64 STACMLITESMRKAFSG 14
S A + ++ K G
Sbjct: 1067 SHAIQNLIQTEFKGSQG 1083


>sp|O06719|GERPC_BACSU Probable spore germination protein gerPC
OS=Bacillus subtilis GN=gerPC PE=1 SV=1
Length = 205

Score = 29.6 bits (65), Expect = 4.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3

Query: 247 DRVLKSVMETMPSDVRSSVLHVQGRERICKELQAKFNAALPSQRIANT 104
D+ + S ++ + S V+ +H+Q ER KE+Q + N QR A T
Sbjct: 3 DQSVSSYLQNLNSFVQQQAIHIQQLERQLKEIQTEMNTM--KQRPATT 48


>sp|Q9CP98|RBSA1_PASMU Ribose import ATP-binding protein rbsA 1
OS=Pasteurella multocida GN=rbsA1 PE=3 SV=1
Length = 498

Score = 29.3 bits (64), Expect = 6.3
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -3

Query: 196 SVLHVQGRERICKELQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLIT 41
++LH+QG ++ ++A NA L + + + + G GAGKST ++T
Sbjct: 5 TLLHIQGIDKSFPGVKALSNACLS---VYAGRAMALMGENGAGKSTLMKVLT 53


>sp|Q4KKK8|METN1_PSEF5 Methionine import ATP-binding protein metN 1
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=metN1 PE=3 SV=1
Length = 335

Score = 29.3 bits (64), Expect = 6.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3

Query: 124 SQRIANTKVLGMFGIGGAGKSTACMLI 44
S R+ N +V G+ G GAGKST LI
Sbjct: 25 SLRVENGQVFGLIGHSGAGKSTLLRLI 51


>sp|Q65WJ1|ARAG_MANSM Arabinose import ATP-binding protein araG
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=araG PE=3 SV=1
Length = 502

Score = 29.3 bits (64), Expect = 6.3
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -3

Query: 208 DVRSSVLHVQGRERICKELQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLI 44
DVR + H+ G ++LQ F S + +VLG+FG+ GAG+S +I
Sbjct: 256 DVRLKIAHLSG-----EKLQGDF-----SLTVRAGEVLGLFGLVGAGRSELLKVI 300


>sp|Q4W5N1|ABCAB_HUMAN Putative ATP-binding cassette sub-family A
member 11 OS=Homo sapiens GN=ABCA11P PE=1 SV=1
Length = 156

Score = 29.3 bits (64), Expect = 6.3
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3

Query: 205 VRSSVLHVQGRE--RICKELQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLIT 41
+ +S LH + E ++ + Q + + + + ++VLG+ G GAGKST+ +IT
Sbjct: 56 ITASCLHKEYYETKKVAFQQQRRKQPSEMFRFVLKSEVLGLLGHNGAGKSTSIKMIT 112


tr_hit_id A9TDN3
Definition tr|A9TDN3|A9TDN3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 83
Score (bit) 63.2
E-value 6.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918919|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_A06.
(291 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TDN3|A9TDN3_PHYPA Predicted protein OS=Physcomitrella paten... 63 6e-09
tr|A9RG57|A9RG57_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.002
tr|A9TC59|A9TC59_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.007
tr|A9T1I0|A9T1I0_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.076
tr|A9SQC0|A9SQC0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.099
tr|B5XW96|B5XW96_KLEP3 SIS domain protein OS=Klebsiella pneumoni... 39 0.17
tr|A6TAA7|A6TAA7_KLEP7 Putative transcriptional regulator OS=Kle... 39 0.17
tr|B4UB13|B4UB13_ANASK Curli production assembly/transport compo... 37 0.38
tr|B8JAW6|B8JAW6_9DELT Curli production assembly/transport compo... 37 0.38
tr|Q2IMY7|Q2IMY7_ANADE Curli production assembly/transport compo... 37 0.49
tr|A7QN76|A7QN76_VITVI Chromosome undetermined scaffold_131, who... 36 0.84
tr|A7PQA2|A7PQA2_VITVI Chromosome chr18 scaffold_24, whole genom... 36 1.1
tr|A7PQA5|A7PQA5_VITVI Chromosome chr18 scaffold_24, whole genom... 35 1.4
tr|A1W696|A1W696_ACISJ Helicase domain protein OS=Acidovorax sp.... 35 1.9
tr|Q018Q6|Q018Q6_OSTTA Putative male sterility 1 protein (ISS) O... 35 1.9
tr|A7PQ41|A7PQ41_VITVI Chromosome chr18 scaffold_24, whole genom... 35 1.9
tr|A5B905|A5B905_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9
tr|B0DEI1|B0DEI1_LACBS Predicted protein OS=Laccaria bicolor (st... 35 1.9
tr|A5N7P8|A5N7P8_CLOK5 Predicted ABC transporter, ATPase compone... 35 2.4
tr|A7QX72|A7QX72_VITVI Chromosome chr6 scaffold_214, whole genom... 35 2.4
tr|A5BMZ0|A5BMZ0_VITVI Putative uncharacterized protein OS=Vitis... 35 2.4
tr|A6F8B3|A6F8B3_9GAMM Hypothetical NosF protein OS=Moritella sp... 34 4.2
tr|A7QDC4|A7QDC4_VITVI Chromosome undetermined scaffold_80, whol... 34 4.2
tr|Q2M0K1|Q2M0K1_DROPS GA19446 OS=Drosophila pseudoobscura pseud... 34 4.2
tr|Q0CGD7|Q0CGD7_ASPTN Putative uncharacterized protein OS=Asper... 34 4.2
tr|A7PWL9|A7PWL9_VITVI Chromosome chr19 scaffold_35, whole genom... 33 5.4
tr|B4PES8|B4PES8_DROYA GE19693 OS=Drosophila yakuba GN=GE19693 P... 33 5.4
tr|B4IUH1|B4IUH1_DROYA GE23239 (Fragment) OS=Drosophila yakuba G... 33 5.4
tr|B0D197|B0D197_LACBS Predicted protein OS=Laccaria bicolor (st... 33 5.4
tr|Q8VVQ6|Q8VVQ6_STAAU ORF46 OS=Staphylococcus aureus PE=3 SV=1 33 7.1

>tr|A9TDN3|A9TDN3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_169462 PE=4 SV=1
Length = 1173

Score = 63.2 bits (152), Expect = 6e-09
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = -3

Query: 250 RDRVLKSVMETMPSDVRSSVLHVQGRERICKELQAKFNAALPSQRIANTKVLGMFGIGGA 71
RD V+ + + +P DV VQGR RIC+ + KF S R +V+G++G GG
Sbjct: 251 RDVVVSYLCDLVPPDVWWDDSDVQGRLRICRRILGKFEKTCESLR-NGVRVVGLYGTGGI 309

Query: 70 GKSTACMLITESMRKAFSGRVCH 2
GK+T C ++ + K F G+VCH
Sbjct: 310 GKTTFCKVLCNELDKKFHGKVCH 332


>tr|A9RG57|A9RG57_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_65683 PE=4 SV=1
Length = 983

Score = 44.7 bits (104), Expect = 0.002
Identities = 30/95 (31%), Positives = 42/95 (44%)
Frame = -3

Query: 286 ISRQQGEGDVGLRDRVLKSVMETMPSDVRSSVLHVQGRERICKELQAKFNAALPSQRIAN 107
IS +V R ++K + P V + +G ERICK L F A
Sbjct: 197 ISLPADGSEVSYRRDIVKKIWYLCPPHVPYDLDEKEGWERICKVLSGLFVAD------EG 250

Query: 106 TKVLGMFGIGGAGKSTACMLITESMRKAFSGRVCH 2
+ LG++G+GG GK+T C + F GRV H
Sbjct: 251 VEKLGIYGMGGLGKTTICKGMCNYFHGHFFGRVFH 285


>tr|A9TC59|A9TC59_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_169270 PE=4 SV=1
Length = 1083

Score = 43.1 bits (100), Expect = 0.007
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -3

Query: 175 RERICKE---LQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLITESMRKAFSGRVC 5
R R C+ + AK PS+R +V+G++G GG GK+T C + + + F G+VC
Sbjct: 254 RWRSCQNSMRILAKVEKTCPSRRDGG-RVVGLYGAGGIGKTTFCKELLDELETKFHGKVC 312

Query: 4 H 2
H
Sbjct: 313 H 313


>tr|A9T1I0|A9T1I0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_167552 PE=4 SV=1
Length = 1042

Score = 39.7 bits (91), Expect = 0.076
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Frame = -3

Query: 277 QQGEGDVGLRDRVLKSVMETMPSDVRSSVLHVQGRE-------------------RICKE 155
+QGEGD R++V +++ + V ++ GR+ R +
Sbjct: 228 EQGEGDSSYRNKVAEALRRSR------EVANLSGRKDAKMSLFTTLLCLRNAFACRDQRR 281

Query: 154 LQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLITESMRKAFSGR 11
+ AK PS+R +V+G++G GG GK+T C + + + F G+
Sbjct: 282 ILAKVEKTCPSRRYGG-RVVGLYGAGGIGKTTFCKELLDELETKFHGK 328


>tr|A9SQC0|A9SQC0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_166149 PE=4 SV=1
Length = 1269

Score = 39.3 bits (90), Expect = 0.099
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -3

Query: 265 GDVGLRDRVLKSVMETMPSDVRSSVLHVQGRERICKELQAKF 140
G+V R+ ++K++ + +P + R HVQGR R+CK L +F
Sbjct: 260 GEVKFREEIVKAICKWVPPETRREDSHVQGRSRLCKALCNEF 301


>tr|B5XW96|B5XW96_KLEP3 SIS domain protein OS=Klebsiella pneumoniae
(strain 342) GN=KPK_2224 PE=4 SV=1
Length = 300

Score = 38.5 bits (88), Expect = 0.17
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = -3

Query: 238 LKSVMETMPSDVRSSVLHV-QGRERICKELQAKFNAALPSQRIA---NTKVLGMFGIGGA 71
++S + + SDV SS+ V +G +R+C+ L N A +Q +A + + +G+FGIG +
Sbjct: 96 MRSTVTALSSDVNSSIDFVLEGHQRVCEVLSRADNRAAVAQAVALLSDARQVGIFGIGAS 155

Query: 70 G 68
G
Sbjct: 156 G 156


>tr|A6TAA7|A6TAA7_KLEP7 Putative transcriptional regulator
OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=KPN78578_20670 PE=4 SV=1
Length = 300

Score = 38.5 bits (88), Expect = 0.17
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = -3

Query: 238 LKSVMETMPSDVRSSVLHV-QGRERICKELQAKFNAALPSQRIA---NTKVLGMFGIGGA 71
++S + + SDV SS+ V +G +R+C+ L N A +Q +A + + +G+FGIG +
Sbjct: 96 MRSTVTALSSDVNSSIDFVLEGHQRVCEVLSRADNRAAVAQAVALLSDARQVGIFGIGAS 155

Query: 70 G 68
G
Sbjct: 156 G 156


>tr|B4UB13|B4UB13_ANASK Curli production assembly/transport
component CsgG OS=Anaeromyxobacter sp. (strain K)
GN=AnaeK_0419 PE=3 SV=1
Length = 321

Score = 37.4 bits (85), Expect = 0.38
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Frame = -3

Query: 274 QGEGDVGLRDRVLKS----VMETMPSDV-----RSSVLHVQGRE---------------- 170
+ E D L DR + + V++ + S + RS +L VQGR+
Sbjct: 194 RAEYDATLNDRAIAAAISDVIDRLVSTLAARPWRSDILEVQGRQVFISGGRHQGVREGDV 253

Query: 169 -------RICKELQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLITESMRKA 23
K Q F ALP +R+ KVL +FG G + C + + ++ KA
Sbjct: 254 LAVMEAGNTVKSRQTGFEVALPPKRVGTIKVLSLFGDGETSEGAVCEVTSGAIEKA 309


>tr|B8JAW6|B8JAW6_9DELT Curli production assembly/transport
component CsgG OS=Anaeromyxobacter dehalogenans 2CP-1
GN=A2cp1_0420 PE=3 SV=1
Length = 321

Score = 37.4 bits (85), Expect = 0.38
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Frame = -3

Query: 274 QGEGDVGLRDRVLKS----VMETMPSDV-----RSSVLHVQGRE---------------- 170
+ E D L DR + + V++ + S + RS +L VQGR+
Sbjct: 194 RAEYDATLNDRAIAAAISDVIDRLVSTLAARPWRSDILEVQGRQVFISGGRHQGVREGDV 253

Query: 169 -------RICKELQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLITESMRKA 23
K Q F ALP +R+ KVL +FG G + C + + ++ KA
Sbjct: 254 LAVMEAGNTVKSRQTGFEVALPPKRVGTIKVLSLFGDGETSEGAVCEVTSGTIEKA 309


>tr|Q2IMY7|Q2IMY7_ANADE Curli production assembly/transport
component CsgG OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=Adeh_0391 PE=3 SV=1
Length = 320

Score = 37.0 bits (84), Expect = 0.49
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 32/116 (27%)
Frame = -3

Query: 274 QGEGDVGLRDRVLKSVMETMPSDV---------RSSVLHVQGRERIC------------- 161
+ E D L DR + + + + + RS +L VQGR+
Sbjct: 193 RAEYDATLNDRAIAAAISDVIDRLVATLAARPWRSDILEVQGRQVFISGGRHQGVREGDL 252

Query: 160 ----------KELQAKFNAALPSQRIANTKVLGMFGIGGAGKSTACMLITESMRKA 23
K Q F ALP +R+ KVL +FG G + C L + ++ KA
Sbjct: 253 LAVMEAGNKVKSRQTGFEVALPPKRVGTLKVLSLFGDGETSEGAVCELTSGTIEKA 308