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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918858
Clone id YMU001_000118_D01
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGAAGAATTCTACTAATACTCAAAAGGGAATCTTTGCTTGTGATGTTGTACAATCGTTT
TCCGATGTGACATCATTTTCAAAATGAACTTCAAAAGCACTATTATGACTATTTCTTCCA
TTAATTCCCACCCTTATGTGACAGGATTGTTATGGAAAGTGAATGACATATTGCGGTACC
TTTTGAATATTGAGTTCGGTCCTAAATACATGTCAAATAAAGCCTGACAAAGTATTGAAG
ATTGAATCACTCCACAAACTCTCGAGTCAATTATGACAACAAGCGTATCATCAGGCCTCC
ATACCAGACAAACTTCAGCTCCTTTCTTCAGCAGCTTCTCTTGATTGAAACATTGAGTGA
ACTCTTTTAATGCATCTTTCCCACGCCCCGCTTTACCGCCTTGAGCCTTGCGTACCCGTG
GCAATAAAGAACGATCAAAACCCTTCGCGATATGATGACCTGCCACATCCTGATCCATGA
CAAGCAAAAG
■■Homology search results ■■ -
sp_hit_id Q9P2K9
Definition sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens
Align length 50
Score (bit) 31.6
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918858|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_D01.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Hom...    32   2.0  
sp|P04760|ACHG_MOUSE Acetylcholine receptor subunit gamma OS=Mus...    31   3.5  
sp|P07510|ACHG_HUMAN Acetylcholine receptor subunit gamma OS=Hom...    31   3.5  
sp|P13536|ACHG_BOVIN Acetylcholine receptor subunit gamma OS=Bos...    31   3.5  

>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo
            sapiens GN=PTCHD2 PE=2 SV=2
          Length = 1392

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -1

Query: 370  LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQA 221
            L++  Q   +  +L++G + C  W+     +V + S +CG++ S ++C A
Sbjct: 1147 LQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLLICVA 1196


>sp|P04760|ACHG_MOUSE Acetylcholine receptor subunit gamma OS=Mus
           musculus GN=Chrng PE=2 SV=1
          Length = 519

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -1

Query: 307 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRNMSFTF 155
           +VWRPD    +++++ V GV + ++ C  L      +Y  P +IF+   ++S T+
Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCIYWLPPAIFRSSCSISVTY 156


>sp|P07510|ACHG_HUMAN Acetylcholine receptor subunit gamma OS=Homo
           sapiens GN=CHRNG PE=1 SV=2
          Length = 517

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -1

Query: 307 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRNMSFTF 155
           +VWRPD    +++++ V GV + ++ C  L      +Y  P +IF+   ++S T+
Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCIYWLPPAIFRSACSISVTY 156


>sp|P13536|ACHG_BOVIN Acetylcholine receptor subunit gamma OS=Bos
           taurus GN=CHRNG PE=2 SV=1
          Length = 519

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 307 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRNMSFTF 155
           +VWRPD    +++++ V GV + ++ C  L      +Y  P +IF+    +S TF
Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCVYWLPPAIFRSSCPVSVTF 156
tr_hit_id A9RME8
Definition tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 114
Score (bit) 139.0
E-value 5.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918858|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_D01.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella paten...   139   5e-32
tr|A9SYP7|A9SYP7_PHYPA Predicted protein (Fragment) OS=Physcomit...    48   3e-04
tr|B6SSF1|B6SSF1_MAIZE Putative uncharacterized protein OS=Zea m...    47   6e-04
tr|B4F9M5|B4F9M5_MAIZE Putative uncharacterized protein OS=Zea m...    47   6e-04
tr|A9NXH6|A9NXH6_PICSI Putative uncharacterized protein OS=Picea...    47   6e-04
tr|Q69SP9|Q69SP9_ORYSJ Os06g0203600 protein OS=Oryza sativa subs...    44   0.004
tr|A3B9E9|A3B9E9_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.004
tr|A2YAF8|A2YAF8_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|Q6K7H0|Q6K7H0_ORYSJ Os02g0778500 protein OS=Oryza sativa subs...    43   0.009
tr|B8AJH7|B8AJH7_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009
tr|A3ABX6|A3ABX6_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.009
tr|B6TFR7|B6TFR7_MAIZE Chalcone isomerase OS=Zea mays PE=2 SV=1        42   0.012
tr|B4FY11|B4FY11_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.012
tr|B4FI80|B4FI80_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.012
tr|A9TWY8|A9TWY8_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A7PUA6|A7PUA6_VITVI Chromosome chr7 scaffold_31, whole genome...    41   0.034
tr|A5AE11|A5AE11_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|Q9M1X2|Q9M1X2_ARATH Putative uncharacterized protein F16M2_20...    40   0.058
tr|Q0D5A7|Q0D5A7_ORYSJ Os07g0571600 protein OS=Oryza sativa subs...    40   0.058
tr|A3BLC6|A3BLC6_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.058
tr|A2YMU6|A2YMU6_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|A7P4U7|A7P4U7_VITVI Chromosome chr4 scaffold_6, whole genome ...    39   0.13 
tr|B6SV98|B6SV98_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.17 
tr|Q84RK2|Q84RK2_ARATH Putative uncharacterized protein At2g2631...    34   3.2  
tr|Q8GXU6|Q8GXU6_ARATH Putative uncharacterized protein At2g2631...    33   5.5  
tr|Q84RK3|Q84RK3_ARATH Putative uncharacterized protein At2g2631...    33   5.5  
tr|Q58G09|Q58G09_ARATH Putative uncharacterized protein OS=Arabi...    33   5.5  
tr|A9NUM8|A9NUM8_PICSI Putative uncharacterized protein OS=Picea...    33   5.5  
tr|Q3A8A0|Q3A8A0_PELCD Type II secretory pathway, component PulF...    33   9.3  
tr|A8HZA4|A8HZA4_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   9.3  

>tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_159965 PE=4 SV=1
          Length = 224

 Score =  139 bits (351), Expect = 5e-32
 Identities = 68/114 (59%), Positives = 87/114 (76%), Gaps = 1/114 (0%)
 Frame = -1

Query: 490 LLLVMDQDVAGHHIAKGFDRSLLPXXXXXXXXXXXXXXXA-LKEFTQCFNQEKLLKKGAE 314
           L+LVMD+DVAGHHIAKGFD+SLLP                 L++FT+CFN+EK LKKG+E
Sbjct: 104 LVLVMDKDVAGHHIAKGFDKSLLPRIRKAQAGSKRGSGKDALRDFTKCFNREKTLKKGSE 163

Query: 313 VCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNSIFKRYRNMSFTFH 152
           V L+W PD+ LVV  D+++  VI+S ILC+A+FDMYLG +SIF++YRNMSFTFH
Sbjct: 164 VALLWTPDNKLVVYFDNQMRAVIESPILCRAVFDMYLGEDSIFRKYRNMSFTFH 217


>tr|A9SYP7|A9SYP7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_137498 PE=4 SV=1
          Length = 200

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNS 191
           L+ FT  F  +  L KG  + L   P + L   ID    G +QSS+LC++LFD+Y+G + 
Sbjct: 123 LQRFTGAFTDDIKLPKGTIIDLTRLPGNVLQTKIDGTEVGSVQSSLLCRSLFDLYIGDDP 182

Query: 190 IFKRYRNM 167
             K  + +
Sbjct: 183 FDKEAKKL 190


>tr|B6SSF1|B6SSF1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 425

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 200
           LK F  CF+++  +  G ++      D  L+  ID +  G +QS  LC+A FDMY+G
Sbjct: 346 LKTFGSCFSEDIRIPAGTKIDFRQTSDGQLITEIDGKQIGTVQSKDLCRAFFDMYIG 402


>tr|B4F9M5|B4F9M5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 425

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 200
           LK F  CF+++  +  G ++      D  L+  ID +  G +QS  LC+A FDMY+G
Sbjct: 346 LKTFGSCFSEDIRIPAGTKIDFRQTSDGQLITEIDGKQIGTVQSKDLCRAFFDMYIG 402


>tr|A9NXH6|A9NXH6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 300

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNS 191
           L+ FT  F  +  L +G ++ +   P   L   ID +  G IQS +LC++LFD+Y+G + 
Sbjct: 222 LQRFTSQFKDDHKLPRGTKIHITRFPGHILQTKIDEKEVGSIQSQLLCRSLFDLYIGEDP 281

Query: 190 IFKR 179
           + K+
Sbjct: 282 LDKQ 285


>tr|Q69SP9|Q69SP9_ORYSJ Os06g0203600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0016O19.34 PE=2 SV=1
          Length = 428

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNS 191
           LK F   FN++  +  G ++      D  L+  ID R  G ++S  LC+ALF MY+G + 
Sbjct: 349 LKTFGSYFNEDIPIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDSP 408

Query: 190 I 188
           +
Sbjct: 409 V 409


>tr|A3B9E9|A3B9E9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019671 PE=4 SV=1
          Length = 387

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNS 191
           LK F   FN++  +  G ++      D  L+  ID R  G ++S  LC+ALF MY+G + 
Sbjct: 308 LKTFGSYFNEDIPIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDSP 367

Query: 190 I 188
           +
Sbjct: 368 V 368


>tr|A2YAF8|A2YAF8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22076 PE=4 SV=1
          Length = 387

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNS 191
           LK F   FN++  +  G ++      D  L+  ID R  G ++S  LC+ALF MY+G + 
Sbjct: 308 LKTFGSYFNEDIPIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDSP 367

Query: 190 I 188
           +
Sbjct: 368 V 368


>tr|Q6K7H0|Q6K7H0_ORYSJ Os02g0778500 protein OS=Oryza sativa subsp.
           japonica GN=OJ1293_A01.5 PE=2 SV=1
          Length = 427

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 200
           LK F   F+++  +  G ++      D  L+  ID +  G +QS  LC+A FDMY+G
Sbjct: 347 LKTFGSYFSEDICIPAGTKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIG 403


>tr|B8AJH7|B8AJH7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09158 PE=4 SV=1
          Length = 373

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -1

Query: 370 LKEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 200
           LK F   F+++  +  G ++      D  L+  ID +  G +QS  LC+A FDMY+G
Sbjct: 293 LKTFGSYFSEDICIPAGTKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIG 349