BP918856
Clone id YMU001_000118_C11
Library
Length 377
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAGAGGCTCTTCACTGAGGGCGCATTGCGAGGACTTCCTCCATCAGCATTTCTGTCCGCA
TTTGAAATGTCAAGAGGGACCTTGCACGTCCTTTCTTCTACACTGCAAGGGAAAAACCCA
TCCAGATGACTTGCTGCAATAGCTTCACTTGTGGCCATGTCAATACGACCCGTGCTTGAG
GCCACAACTGTATTAACAAACGATTTCTTCTTGGGAACCCTCTCCTGCATGCAAAATTCA
TCGCCTGAAATGACTGCCTCAGCATTCGCAGCATGATCGAAGTGGTGCGCCTCTTCCAAG
CCCACTTCTCCTTTTTCTTCAGGTTCTTGTTCTCGTTCTAGTTCCTCTGCTTCAAAATTC
TGAAGCATGCCATCTGA
■■Homology search results ■■ -
sp_hit_id Q04962
Definition sp|Q04962|FA12_CAVPO Coagulation factor XII (Fragment) OS=Cavia porcellus
Align length 73
Score (bit) 30.4
E-value 2.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918856|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_C11.
(377 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q04962|FA12_CAVPO Coagulation factor XII (Fragment) OS=Cavia ... 30 2.8
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1 30 4.8
sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2... 29 6.3
sp|Q6A8J7|SYH_PROAC Histidyl-tRNA synthetase OS=Propionibacteriu... 29 8.3
sp|Q08B84|RN19B_XENLA E3 ubiquitin-protein ligase RNF19B OS=Xeno... 29 8.3
sp|Q92832|NELL1_HUMAN Protein kinase C-binding protein NELL1 OS=... 29 8.3
sp|A2RM73|MEND_LACLM 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh... 29 8.3

>sp|Q04962|FA12_CAVPO Coagulation factor XII (Fragment) OS=Cavia
porcellus GN=F12 PE=1 SV=1
Length = 603

Score = 30.4 bits (67), Expect = 2.8
Identities = 23/73 (31%), Positives = 26/73 (35%), Gaps = 16/73 (21%)
Frame = +2

Query: 8 SSLRAHCEDFLHQHFCPHLKCQE----------------GPCTSFLLHCKGKTHPDDLLQ 139
SS C D L C KC E GP HCKG PD +
Sbjct: 114 SSPHCLCPDHLTGKHCQREKCFEPQLHRFFHENEIWFRTGPAGVAKCHCKG---PDAHCK 170

Query: 140 *LHLWPCQYDPCL 178
+H CQ +PCL
Sbjct: 171 QMHSQECQTNPCL 183


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
Length = 4998

Score = 29.6 bits (65), Expect = 4.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2

Query: 53 CPHLKCQEGPCTSFLLHCKGKTHPD 127
CP C +G C FLL C G +PD
Sbjct: 1534 CPEFSCPDGTCIDFLLVCDG--NPD 1556


>sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2 SV=1
Length = 5141

Score = 29.3 bits (64), Expect = 6.3
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +2

Query: 53 CPHLKCQEGPCTSFLLHCKGKTHPDDLLQ*LHLWPCQYDPCLRPQLY*Q---TISSWEPS 223
CP C G C FLL C G PD C+ P L Q T SW P
Sbjct: 1661 CPEFSCPNGTCIDFLLVCDGS--PD----------CELADETEPSLDEQGCGTWGSWGPW 1708

Query: 224 PAC 232
C
Sbjct: 1709 EPC 1711


>sp|Q6A8J7|SYH_PROAC Histidyl-tRNA synthetase OS=Propionibacterium
acnes GN=hisS PE=3 SV=1
Length = 454

Score = 28.9 bits (63), Expect = 8.3
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1

Query: 206 KSFVNTVVASSTGRIDMATSEAIAASHLDGFFPCSVEERTCKVPLDISNADR 51
+S + V+ + D ATSE IA++ PC V + K I +ADR
Sbjct: 350 RSVPSAVLVAVNTEEDRATSEVIASALRSRGIPCEVAPKADKFGKQIKHADR 401


>sp|Q08B84|RN19B_XENLA E3 ubiquitin-protein ligase RNF19B OS=Xenopus
laevis GN=rnf19b PE=2 SV=2
Length = 687

Score = 28.9 bits (63), Expect = 8.3
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2

Query: 53 CPHLKCQEGPC-TSFLLHCKGKTHPD 127
CP L C+ C T F HCK HP+
Sbjct: 199 CPKLTCEREGCRTEFCYHCKHVWHPN 224


>sp|Q92832|NELL1_HUMAN Protein kinase C-binding protein NELL1
OS=Homo sapiens GN=NELL1 PE=2 SV=3
Length = 810

Score = 28.9 bits (63), Expect = 8.3
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -3

Query: 198 C*YSCGLKHGSY*HGHK*SYCSKSSGWVFPLQCRRK--DVQGPS*HFKCGQKC*WRKSSQ 25
C + GLKH K CS S + CRR D Q PS C +C R +SQ
Sbjct: 634 CPHEGGLKHNGQVWTLKEDRCSVCSCKDGKIFCRRTACDCQNPSADLFCCPECDTRVTSQ 693

Query: 24 C 22
C
Sbjct: 694 C 694


>sp|A2RM73|MEND_LACLM
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate synthase OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=menD PE=3 SV=1
Length = 554

Score = 28.9 bits (63), Expect = 8.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1

Query: 158 MATSEAIAASHLDGFFPCSVEERTCKVPLDISNADRNAD 42
+ TS + AA H FP E +T ++PL I ADR A+
Sbjct: 71 VCTSGSAAAHH----FPAITEAKTSRIPLIILTADRPAE 105


tr_hit_id A0EIZ7
Definition tr|A0EIZ7|A0EIZ7_APIME Nicotinic acetylcholine receptor alpha9 subunit OS=Apis mellifera
Align length 32
Score (bit) 34.3
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918856|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_C11.
(377 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0EIZ7|A0EIZ7_APIME Nicotinic acetylcholine receptor alpha9 s... 34 3.1

>tr|A0EIZ7|A0EIZ7_APIME Nicotinic acetylcholine receptor alpha9
subunit OS=Apis mellifera PE=2 SV=1
Length = 431

Score = 34.3 bits (77), Expect = 3.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2

Query: 89 SFLLHCKGKTHPDDLLQ*LHLWPCQYDPCLRP 184
S+LL+CK HP LL+ C+YDP +RP
Sbjct: 30 SYLLNCKNYDHPTTLLKLKRYLFCEYDPNVRP 61