BP918855 |
Clone id |
YMU001_000118_C10 |
Library |
YMU01 |
Length |
591 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000118_C10. |
Accession |
BP918855 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CGACATGGCAGAACGGAGACACAGCAGAAAGAAGCAGAAGTCTTGGCTCTGCTCCTCCTC TGCACGCGCTGTGAGTGTCCTTCTGGATGCGCTTTCCACGAATTCGTCTTTCGTTCCAGC ATAGACCCCCTGTGCAAAGCCCAGGAAGTGGCCGCTCTCCTTCCTTGTACACACTATCCA AATTACTCATTGCGACACCTGCATGTTTACAATGCTCAGAGATGGAGCGCGAGCATTGTC CACGTAAGCAAGAGACTCCGTTCCTCAGAATGGAAGATCTAACATGCTCAGAGTGAAGCG CCAAGTTATGGTTGCTTCGAAGGCGTATGTATCAATGGCAATTCAGGAAATGGATGTTCA AAGCCTTCTTGAAAACTGCCATGCAGGGAATGACATTCATTCATCTAGACGACTGCTGTT TTGGATGGCTTGCAATGGACTTGAATGCCTCCCCTTATATGCAGACTACCTCATTCGGTC GTTTGCCTCAAGTTCCAATTTGGCAAAAGCATGTCAAGTCTTCCTGAAGGTCTCAACCGC TACTGTTTACACATGGAATGCTATAATCTCAGCACATGCTCTGCACTCCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SX45 |
Definition |
sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana |
Align length |
84 |
Score (bit) |
41.2 |
E-value |
0.004 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q84M45 |
Definition |
tr|Q84M45|Q84M45_ORYSJ Putative pentatricopeptide repeat containing protein OS=Oryza sativa subsp. japonica |
Align length |
42 |
Score (bit) |
43.9 |
E-value |
0.007 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918855|Adiantum capillus-veneris mRNA, clone: YMU001_000118_C10. (591 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q84M45|Q84M45_ORYSJ Putative pentatricopeptide repeat contain... 44 0.007 tr|Q10BR5|Q10BR5_ORYSJ Calreticulin family protein, expressed (P... 44 0.007 tr|B8ALT6|B8ALT6_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.007 tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 42 0.026 tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.026 tr|A7P6T0|A7P6T0_VITVI Chromosome chr9 scaffold_7, whole genome ... 42 0.026 tr|A7PWD1|A7PWD1_VITVI Chromosome chr8 scaffold_34, whole genome... 42 0.034 tr|A7PLK6|A7PLK6_VITVI Chromosome chr7 scaffold_20, whole genome... 40 0.075 tr|A7PPW6|A7PPW6_VITVI Chromosome chr18 scaffold_24, whole genom... 40 0.13 tr|A7QPS9|A7QPS9_VITVI Chromosome chr10 scaffold_138, whole geno... 39 0.17 tr|A7QGY9|A7QGY9_VITVI Chromosome chr3 scaffold_95, whole genome... 39 0.17 tr|A7QD49|A7QD49_VITVI Chromosome undetermined scaffold_80, whol... 39 0.17 tr|A5B2K7|A5B2K7_VITVI Putative uncharacterized protein OS=Vitis... 39 0.17 tr|A5AE49|A5AE49_VITVI Putative uncharacterized protein OS=Vitis... 39 0.17 tr|Q8S7V8|Q8S7V8_ORYSJ cDNA, clone: J090081F08, full insert sequ... 39 0.22 tr|B8ANQ6|B8ANQ6_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.22 tr|A7QGW1|A7QGW1_VITVI Chromosome chr16 scaffold_94, whole genom... 39 0.29 tr|A7PSG6|A7PSG6_VITVI Chromosome chr6 scaffold_28, whole genome... 39 0.29 tr|A7PCT9|A7PCT9_VITVI Chromosome chr17 scaffold_12, whole genom... 39 0.29 tr|A5C8J5|A5C8J5_VITVI Putative uncharacterized protein OS=Vitis... 39 0.29 tr|A5BKU6|A5BKU6_VITVI Putative uncharacterized protein OS=Vitis... 39 0.29 tr|A2XCZ8|A2XCZ8_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.29 tr|A7PMU6|A7PMU6_VITVI Chromosome chr14 scaffold_21, whole genom... 38 0.37 tr|A5C193|A5C193_VITVI Putative uncharacterized protein OS=Vitis... 38 0.37 tr|Q2HSF0|Q2HSF0_MEDTR Tetratricopeptide-like helical OS=Medicag... 38 0.49 tr|B8A020|B8A020_MAIZE Putative uncharacterized protein OS=Zea m... 38 0.49 tr|A9U2Q7|A9U2Q7_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.49 tr|A9PIF9|A9PIF9_POPTR Putative uncharacterized protein OS=Popul... 38 0.49 tr|Q851X3|Q851X3_ORYSJ Putative uncharacterized protein OSJNBa00... 37 0.64 tr|Q654C7|Q654C7_ORYSJ Os06g0506100 protein OS=Oryza sativa subs... 37 0.64
>tr|Q84M45|Q84M45_ORYSJ Putative pentatricopeptide repeat containing protein OS=Oryza sativa subsp. japonica GN=OSJNBa0059E14.12 PE=4 SV=1 Length = 859
Score = 43.9 bits (102), Expect = 0.007 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = +2
Query: 461 ADYLIRSFASSSNLAKACQVFLKVSTATVYTWNAIISAHALH 586 A+ LI +++ S NLA AC VF S+ + +WN II AH LH Sbjct: 531 ANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLH 572
>tr|Q10BR5|Q10BR5_ORYSJ Calreticulin family protein, expressed (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica GN=LOC_Os03g59264 PE=4 SV=1 Length = 1111
Score = 43.9 bits (102), Expect = 0.007 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = +2
Query: 461 ADYLIRSFASSSNLAKACQVFLKVSTATVYTWNAIISAHALH 586 A+ LI +++ S NLA AC VF S+ + +WN II AH LH Sbjct: 531 ANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLH 572
>tr|B8ALT6|B8ALT6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13992 PE=4 SV=1 Length = 822
Score = 43.9 bits (102), Expect = 0.007 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = +2
Query: 461 ADYLIRSFASSSNLAKACQVFLKVSTATVYTWNAIISAHALH 586 A+ LI +++ S NLA AC VF S+ + +WN II AH LH Sbjct: 494 ANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLH 535
>tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 Length = 868
Score = 42.0 bits (97), Expect = 0.026 Identities = 22/75 (29%), Positives = 40/75 (53%) Frame = +2
Query: 362 SLLENCHAGNDIHSSRRLLFWMACNGLECLPLYADYLIRSFASSSNLAKACQVFLKVSTA 541 S+L+ C+ + + R++ + G+E A LI ++ ++ AC+VF K++ Sbjct: 162 SILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTER 221
Query: 542 TVYTWNAIISAHALH 586 V +W AII A+A H Sbjct: 222 NVVSWTAIIQANAQH 236
Score = 39.7 bits (91), Expect = 0.13 Identities = 20/73 (27%), Positives = 43/73 (58%) Frame = +2
Query: 362 SLLENCHAGNDIHSSRRLLFWMACNGLECLPLYADYLIRSFASSSNLAKACQVFLKVSTA 541 SLL +C+ ++ RR+ ++ GLE + A+ LI + +++ +A ++F ++S Sbjct: 263 SLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKR 322
Query: 542 TVYTWNAIISAHA 580 V +W+A+I+ +A Sbjct: 323 DVISWSAMIAGYA 335
>tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_211228 PE=4 SV=1 Length = 868
Score = 42.0 bits (97), Expect = 0.026 Identities = 22/75 (29%), Positives = 40/75 (53%) Frame = +2
Query: 362 SLLENCHAGNDIHSSRRLLFWMACNGLECLPLYADYLIRSFASSSNLAKACQVFLKVSTA 541 S+L+ C+ + + R++ + G+E A LI ++ ++ AC+VF K++ Sbjct: 162 SILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTER 221
Query: 542 TVYTWNAIISAHALH 586 V +W AII A+A H Sbjct: 222 NVVSWTAIIQANAQH 236
Score = 39.7 bits (91), Expect = 0.13 Identities = 20/73 (27%), Positives = 43/73 (58%) Frame = +2
Query: 362 SLLENCHAGNDIHSSRRLLFWMACNGLECLPLYADYLIRSFASSSNLAKACQVFLKVSTA 541 SLL +C+ ++ RR+ ++ GLE + A+ LI + +++ +A ++F ++S Sbjct: 263 SLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKR 322
Query: 542 TVYTWNAIISAHA 580 V +W+A+I+ +A Sbjct: 323 DVISWSAMIAGYA 335
>tr|A7P6T0|A7P6T0_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034189001 PE=4 SV=1 Length = 584
Score = 42.0 bits (97), Expect = 0.026 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = +2
Query: 332 SMAIQEMDVQSLLENCHAGNDIHSSRRLLFWMACNGLECLPLYADYLIRSFASSSNLAKA 511 S+ E+ + ++L C + R + ++ NGL+ + A L+ +A + A Sbjct: 284 SVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDA 343
Query: 512 CQVFLKVSTATVYTWNAIISAHALH 586 C +F+K S V WNA+I A H Sbjct: 344 CLIFVKTSEKDVALWNAMILGLAYH 368
>tr|A7PWD1|A7PWD1_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025565001 PE=4 SV=1 Length = 649
Score = 41.6 bits (96), Expect = 0.034 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +2
Query: 437 GLECLPLYADYLIRSFASSSNLAKACQVFLKVSTATVYTWNAIISAHALH 586 G E P + +I +A ++ ACQ+F ++ +WNA+ISA+ALH Sbjct: 387 GFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALH 436
>tr|A7PLK6|A7PLK6_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019609001 PE=4 SV=1 Length = 580
Score = 40.4 bits (93), Expect = 0.075 Identities = 30/111 (27%), Positives = 51/111 (45%) Frame = +2
Query: 254 DSVPQNGRSNMLRVKRQVMVASKAYVSMAIQEMDVQSLLENCHAGNDIHSSRRLLFWMAC 433 D QNG N V + M+ +KA + E+ V S+L C + S R + ++ Sbjct: 181 DGYTQNGMPNEALVLFRRMLKAKAKPN----EVTVLSVLSACGQLGALESGRWVHSYIEN 236
Query: 434 NGLECLPLYADYLIRSFASSSNLAKACQVFLKVSTATVYTWNAIISAHALH 586 NG++ L+ ++ +L A VF K+ V WN++I +A+H Sbjct: 237 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 287
>tr|A7PPW6|A7PPW6_VITVI Chromosome chr18 scaffold_24, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021813001 PE=4 SV=1 Length = 619
Score = 39.7 bits (91), Expect = 0.13 Identities = 22/74 (29%), Positives = 36/74 (48%) Frame = +2
Query: 362 SLLENCHAGNDIHSSRRLLFWMACNGLECLPLYADYLIRSFASSSNLAKACQVFLKVSTA 541 SLL C + +++ + NGLE L+ + S +L A VF VS+ Sbjct: 50 SLLRACVESKSLTHGKQIHVHIRINGLENNEFLRTKLVHMYTSCGSLEDARGVFDGVSSK 109
Query: 542 TVYTWNAIISAHAL 583 +VYTWNA++ + + Sbjct: 110 SVYTWNALLRGNVI 123
>tr|A7QPS9|A7QPS9_VITVI Chromosome chr10 scaffold_138, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00003060001 PE=4 SV=1 Length = 933
Score = 39.3 bits (90), Expect = 0.17 Identities = 21/80 (26%), Positives = 38/80 (47%) Frame = +2
Query: 347 EMDVQSLLENCHAGNDIHSSRRLLFWMACNGLECLPLYADYLIRSFASSSNLAKACQVFL 526 E + S++ C D + + ++ G + P A+ L+ +A +LA A VF Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317
Query: 527 KVSTATVYTWNAIISAHALH 586 K+ + +WNA+I+ LH Sbjct: 318 KIKQPDIVSWNAVIAGCVLH 337
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