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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918814
Clone id YMU001_000117_G04
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTTTTCAACCCCTCTCTCGAATGTTGCCATGCAGAGTGTCCACAGTACACACTCCCATC
TTTCTGTCAGCTGGCCACACTTAGGCATAACATGCCAGCTCAAGCATGATCTCTCTTCCA
TAGAATCCTGGTCGCACCTCCATCATCTTGGCAATTACAAGATCATGACTTCCGCTCTCT
CTTTCAACTAAAGAGCTTCACTACAGACGAGAGAGATGAACGACATGTACTCAACGAATT
TCTTGATCTCCACCCATCAGCAGTCTCTGTCTCCATGCTCCCAGTACGACTACTTACAGA
GACAAAGCTCTTCAGCGACAGTTGCAATACTTTCATCTTGAGCATTGACGATCATGCTGA
TGACGACTTTTTTTTTTTCAATCTCTTATTTGTGTTTCATTTTATTTTATACCCAGATAT
GGTATTAGATCCTTATGACATTAAATTAGATCATTAAGGATTGTATCAACATGATCTCCT
AGGCTTTTGAACACAAGTAATTTTACATTTCATTTCATTTCGCTCTCTTTCTCCAGTACG
CCTACGTA
■■Homology search results ■■ -
sp_hit_id Q9K6A4
Definition sp|Q9K6A4|Y3825_BACHD UPF0447 protein BH3825 OS=Bacillus halodurans
Align length 31
Score (bit) 30.8
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918814|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_G04.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9K6A4|Y3825_BACHD UPF0447 protein BH3825 OS=Bacillus halodur...    31   4.5  
sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190 OS=Ar...    30   5.9  
sp|P0ADV0|YQIB_SHIFL Uncharacterized protein yqiB OS=Shigella fl...    30   7.7  
sp|P0ADU7|YQIB_ECOLI Uncharacterized protein yqiB OS=Escherichia...    30   7.7  
sp|P0ADU8|YQIB_ECOL6 Uncharacterized protein yqiB OS=Escherichia...    30   7.7  
sp|P0ADU9|YQIB_ECO57 Uncharacterized protein yqiB OS=Escherichia...    30   7.7  

>sp|Q9K6A4|Y3825_BACHD UPF0447 protein BH3825 OS=Bacillus halodurans
           GN=BH3825 PE=3 SV=2
          Length = 249

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 15/31 (48%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
 Frame = +2

Query: 164 HDFRSL--FQLKSFTTDERDERHVLNEFLDL 250
           HDFR++   +LK+ +T+ER +  ++NEFLDL
Sbjct: 15  HDFRTINWAELKTLSTEERQQ--IINEFLDL 43


>sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190
           OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1
          Length = 403

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 100 SWHVMPKCGQLTERWEC 50
           +WH +PKC  L E+W C
Sbjct: 372 TWHWVPKCPSLPEKWSC 388


>sp|P0ADV0|YQIB_SHIFL Uncharacterized protein yqiB OS=Shigella
           flexneri GN=yqiB PE=4 SV=1
          Length = 140

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 89  NMPAQA*SLFHRILVAPPSSWQLQDHDFRSLFQLKSFTTDERDERHVLNEFL 244
           ++P+    L+H  +VA   S Q Q   F++ +   +    +RDE+H +N+FL
Sbjct: 72  SLPSMTVRLYHDAMVAEVCSSQ-QIFRFKARYDYPNKKLHQRDEKHQINQFL 122


>sp|P0ADU7|YQIB_ECOLI Uncharacterized protein yqiB OS=Escherichia
           coli (strain K12) GN=yqiB PE=4 SV=1
          Length = 140

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 89  NMPAQA*SLFHRILVAPPSSWQLQDHDFRSLFQLKSFTTDERDERHVLNEFL 244
           ++P+    L+H  +VA   S Q Q   F++ +   +    +RDE+H +N+FL
Sbjct: 72  SLPSMTVRLYHDAMVAEVCSSQ-QIFRFKARYDYPNKKLHQRDEKHQINQFL 122


>sp|P0ADU8|YQIB_ECOL6 Uncharacterized protein yqiB OS=Escherichia
           coli O6 GN=yqiB PE=4 SV=1
          Length = 140

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 89  NMPAQA*SLFHRILVAPPSSWQLQDHDFRSLFQLKSFTTDERDERHVLNEFL 244
           ++P+    L+H  +VA   S Q Q   F++ +   +    +RDE+H +N+FL
Sbjct: 72  SLPSMTVRLYHDAMVAEVCSSQ-QIFRFKARYDYPNKKLHQRDEKHQINQFL 122


>sp|P0ADU9|YQIB_ECO57 Uncharacterized protein yqiB OS=Escherichia
           coli O157:H7 GN=yqiB PE=4 SV=1
          Length = 140

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 89  NMPAQA*SLFHRILVAPPSSWQLQDHDFRSLFQLKSFTTDERDERHVLNEFL 244
           ++P+    L+H  +VA   S Q Q   F++ +   +    +RDE+H +N+FL
Sbjct: 72  SLPSMTVRLYHDAMVAEVCSSQ-QIFRFKARYDYPNKKLHQRDEKHQINQFL 122
tr_hit_id Q2JC61
Definition tr|Q2JC61|Q2JC61_FRASC Putative uncharacterized protein OS=Frankia sp. (strain CcI3)
Align length 32
Score (bit) 33.5
E-value 7.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918814|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_G04.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2JC61|Q2JC61_FRASC Putative uncharacterized protein OS=Frank...    33   7.5  
tr|Q29N53|Q29N53_DROPS GA11218 OS=Drosophila pseudoobscura pseud...    33   9.8  
tr|B4G888|B4G888_DROPE GL18883 OS=Drosophila persimilis GN=GL188...    33   9.8  

>tr|Q2JC61|Q2JC61_FRASC Putative uncharacterized protein OS=Frankia
           sp. (strain CcI3) GN=Francci3_1755 PE=4 SV=1
          Length = 144

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 167 DFRSLFQLKSFTTDERDERHVLNEFLDLHPSA 262
           D+R L + K++T D  D RH+ +  +DL+PSA
Sbjct: 75  DYRDLGEFKAWTDDTLDHRHLNDVIIDLNPSA 106


>tr|Q29N53|Q29N53_DROPS GA11218 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA11218 PE=4 SV=1
          Length = 444

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
 Frame = +3

Query: 72  WPHLGITCQLKHDLSSIESWSHLHHLGNYKIMTSALSFN*RASLQTREMNDMYSTNFLIS 251
           WPH   TC+LK     I SW   H   +Y  M   L ++            M ST + I 
Sbjct: 182 WPHDEQTCKLK-----IGSWGVRHINADYNKMEKGLDYD----------GLMQSTEWQII 226

Query: 252 THQQSLSPCSQYDYL------QRQSSSATVAILSS*ALTIMLMTTFFF 377
           +      P   Y YL      QR+S+  T  I +  A  ++L  + F+
Sbjct: 227 SGDTKFVPQDYYSYLEYTLTAQRRSNMYTAIIYTPAACFVILALSAFW 274


>tr|B4G888|B4G888_DROPE GL18883 OS=Drosophila persimilis GN=GL18883
           PE=4 SV=1
          Length = 444

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
 Frame = +3

Query: 72  WPHLGITCQLKHDLSSIESWSHLHHLGNYKIMTSALSFN*RASLQTREMNDMYSTNFLIS 251
           WPH   TC+LK     I SW   H   +Y  M   L ++            M ST + I 
Sbjct: 182 WPHDEQTCKLK-----IGSWGVRHINADYNKMEKGLDYD----------GLMQSTEWQII 226

Query: 252 THQQSLSPCSQYDYL------QRQSSSATVAILSS*ALTIMLMTTFFF 377
           +      P   Y YL      QR+S+  T  I +  A  ++L  + F+
Sbjct: 227 SGDTKFVPQDYYSYLEYTLTAQRRSNMYTAIIYTPAACFVILALSAFW 274