NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918736
Clone id YMU001_000116_H07
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGGGGAATCTCTGGGAGCAAAGAAAGTTCTTGATGAGCTTTTTGTCCGAAA
TGTTCTCCCTTGGAATATGTTGAAGATGCCAAATATGGCTATTCATGCTAAATGCTATTG
TTCATTGGATGCAAAGGGAAGGAGCACAACACTCACTTCTTAAAAGACTATGGTCTTACA
TAAGACAAATTCTTGATGAGATGCTTGTTGCGGGGTGCTAGACAAAGATGTCATTCTTGG
CAAGGCTTTGTTTTGACAAGTGTGGTGTCCCCATAAAGTCTTTGATTGGAGTTGTCTCTT
GAAACTTGTACGTTGGTTGTACGAGATGACATATCAAAGAGTTGTAGGATATGAACAACA
TGGCTGTGGCAAGGAAGGTATTTTAACCAATGTCAAGTGACGACATTCTTTAAATAAAAG
CACCTATGTTTGCATCTCAAAAGCATGTGGCTATATACAAGACCTTCACATGGGTGAAGA
ATTCACAATGAGATTGCTAGGTAGAGGCTATTCAAGAATTCGCGGCCGCGAATT
■■Homology search results ■■ -
sp_hit_id Q9ZQA1
Definition sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana
Align length 49
Score (bit) 33.1
E-value 0.78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918736|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_H07.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protei...    33   0.78 
sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protei...    31   2.9  
sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protei...    30   5.0  
sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protei...    30   6.6  
sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protei...    30   8.6  
sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protei...    30   8.6  
sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protei...    30   8.6  

>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein
           At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=2 SV=1
          Length = 501

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +2

Query: 5   TCGESLGAKKVLDELFVRNVLPWN-----MLKMPNMAIHAKCYCSLDAK 136
           TC ++  A+KV DE+  RNV+ WN     +++   + +  +C+C +  K
Sbjct: 160 TCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECFCEMIGK 208


>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein
           At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
          Length = 721

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 341 VVGYEQHGCGKEGILTNVK*RHS---LNKSTYVCISKACGYIQDLHMGEEF 484
           + GY QHG G E +L   +   S    NK T+V +  AC +   +  G+E+
Sbjct: 419 IKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEY 469


>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H34 PE=2 SV=1
          Length = 659

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 2   STCGESLGAKKVLDELFVRNVLPWNML 82
           STCG+   A+KV DE+  RN++ W  +
Sbjct: 122 STCGKLEDARKVFDEIPKRNIVSWTSM 148


>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E28 PE=2 SV=1
          Length = 681

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   STCGESLGAKKVLDELFVRNVLPWNML 82
           ++CG+   A+KV DE  VR+++ WN L
Sbjct: 202 ASCGDMENARKVFDESPVRDLVSWNCL 228


>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein
           At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2
          Length = 774

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 8   CGESLGAKKVLDELFVRNVLPWN 76
           CG+   A+KV DE+ VR+V  WN
Sbjct: 54  CGDGDYARKVFDEMSVRDVYSWN 76


>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein
           At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
          Length = 842

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 8   CGESLGAKKVLDELFVRNVLPWNML 82
           CGE   A+KV DE+  RNV+ W  +
Sbjct: 182 CGELDSARKVFDEMSERNVVSWTSM 206


>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein
           At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1
          Length = 697

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   STCGESLGAKKVLDELFVRNVLPWNML 82
           S CG    A++V DE+  RNV+ WN L
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSL 224
tr_hit_id B6SWY6
Definition tr|B6SWY6|B6SWY6_MAIZE Pentatricopeptide repeat protein PPR1106-17 OS=Zea mays
Align length 95
Score (bit) 37.0
E-value 0.55
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918736|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_H07.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SWY6|B6SWY6_MAIZE Pentatricopeptide repeat protein PPR1106-...    37   0.55 
tr|A2XK21|A2XK21_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.72 
tr|Q60DN6|Q60DN6_ORYSJ Os03g0644200 protein OS=Oryza sativa subs...    35   1.6  
tr|A3AKS8|A3AKS8_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.6  
tr|Q7XUP0|Q7XUP0_ORYSJ Os04g0514500 protein OS=Oryza sativa subs...    33   6.1  
tr|Q01I18|Q01I18_ORYSA OSIGBa0140J09.3 protein OS=Oryza sativa G...    33   6.1  
tr|B8AS37|B8AS37_ORYSI Putative uncharacterized protein OS=Oryza...    33   6.1  
tr|A3AVJ5|A3AVJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.1  
tr|B2IYP0|B2IYP0_NOSP7 Hydroxymethylglutaryl-coenzyme A synthase...    33   8.0  
tr|A6DI99|A6DI99_9BACT Putative uncharacterized protein OS=Lenti...    33   8.0  
tr|B8LKN6|B8LKN6_PICSI Putative uncharacterized protein OS=Picea...    33   8.0  
tr|A7PRT7|A7PRT7_VITVI Chromosome chr14 scaffold_27, whole genom...    33   8.0  
tr|A6RKT1|A6RKT1_BOTFB Predicted protein OS=Botryotinia fuckelia...    33   8.0  

>tr|B6SWY6|B6SWY6_MAIZE Pentatricopeptide repeat protein PPR1106-17
           OS=Zea mays PE=2 SV=1
          Length = 618

 Score = 37.0 bits (84), Expect = 0.55
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = +2

Query: 227 DVILGKALF*QVWCPHKVFDWSCLLKLVRWLYEMTYQRVV-GYEQHGCGKEGILTNVK-- 397
           D+ +G AL        +VFD   +   +     +T+  ++ GY Q GCG+E +L   K  
Sbjct: 324 DIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMK 383

Query: 398 -*RHSLNKSTYVCISKACGYIQDLHMGEEFTMRLL 499
             R  +N  T V +  ACG +Q ++ G+E   +++
Sbjct: 384 MRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQII 418


>tr|A2XK21|A2XK21_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12790 PE=4 SV=1
          Length = 885

 Score = 36.6 bits (83), Expect = 0.72
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
 Frame = +2

Query: 209 CGVLDK----DVILGKALF*QVWCPHKVFDWSCLLKLVRWLYEMTYQRVV-GYEQHGCGK 373
           C VL K    D+ +G AL        +VFD   +  ++     +T+  ++ GY Q G G+
Sbjct: 574 CAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGE 633

Query: 374 EGILTNVK*---RHSLNKSTYVCISKACGYIQDLHMGEEFTMRLL 499
           + I    K    R  +N  T V +  ACG +Q L++G+E   +++
Sbjct: 634 KAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQII 678


>tr|Q60DN6|Q60DN6_ORYSJ Os03g0644200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0038E17.22 PE=2 SV=1
          Length = 616

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
 Frame = +2

Query: 209 CGVLDK----DVILGKALF*QVWCPHKVFDWSCLLKLVRWLYEMTYQRVV-GYEQHGCGK 373
           C VL K    D+ +G AL        +VFD   +  ++     +T+  ++ GY Q G G+
Sbjct: 305 CAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGE 364

Query: 374 EGILTNVK*---RHSLNKSTYVCISKACGYIQDLHMGEEFTMRLL 499
           + IL   K    R  +N  T V +  ACG +Q  ++G+E   +++
Sbjct: 365 KAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQII 409


>tr|A3AKS8|A3AKS8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011400 PE=4 SV=1
          Length = 583

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
 Frame = +2

Query: 209 CGVLDK----DVILGKALF*QVWCPHKVFDWSCLLKLVRWLYEMTYQRVV-GYEQHGCGK 373
           C VL K    D+ +G AL        +VFD   +  ++     +T+  ++ GY Q G G+
Sbjct: 272 CAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGE 331

Query: 374 EGILTNVK*---RHSLNKSTYVCISKACGYIQDLHMGEEFTMRLL 499
           + IL   K    R  +N  T V +  ACG +Q  ++G+E   +++
Sbjct: 332 KAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQII 376


>tr|Q7XUP0|Q7XUP0_ORYSJ Os04g0514500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0070J16.5 PE=2 SV=2
          Length = 1027

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
 Frame = +2

Query: 218 LDKDVILGKAL---F*QVWCPH---KVFDWSCLLKLVRWLYEMTYQRVVGYEQHGCGKEG 379
           LD +V +G +L   + +  CP     VFD SC   +V W   +T     G+ Q+   +E 
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLT-----GFVQNELPEEA 410

Query: 380 I-LTNVK*RHSL--NKSTYVCISKACGYIQDLHMGEE 481
           I +     R++L  ++ T+V I  AC Y+   ++G++
Sbjct: 411 IRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQ 447


>tr|Q01I18|Q01I18_ORYSA OSIGBa0140J09.3 protein OS=Oryza sativa
           GN=OSIGBa0140J09.3 PE=4 SV=1
          Length = 1027

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
 Frame = +2

Query: 218 LDKDVILGKAL---F*QVWCPH---KVFDWSCLLKLVRWLYEMTYQRVVGYEQHGCGKEG 379
           LD +V +G +L   + +  CP     VFD SC   +V W   +T     G+ Q+   +E 
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLT-----GFVQNELPEEA 410

Query: 380 I-LTNVK*RHSL--NKSTYVCISKACGYIQDLHMGEE 481
           I +     R++L  ++ T+V I  AC Y+   ++G++
Sbjct: 411 IRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQ 447


>tr|B8AS37|B8AS37_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16630 PE=4 SV=1
          Length = 1027

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
 Frame = +2

Query: 218 LDKDVILGKAL---F*QVWCPH---KVFDWSCLLKLVRWLYEMTYQRVVGYEQHGCGKEG 379
           LD +V +G +L   + +  CP     VFD SC   +V W   +T     G+ Q+   +E 
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLT-----GFVQNELPEEA 410

Query: 380 I-LTNVK*RHSL--NKSTYVCISKACGYIQDLHMGEE 481
           I +     R++L  ++ T+V I  AC Y+   ++G++
Sbjct: 411 IRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQ 447


>tr|A3AVJ5|A3AVJ5_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_014817 PE=4 SV=1
          Length = 1977

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
 Frame = +2

Query: 218  LDKDVILGKAL---F*QVWCPH---KVFDWSCLLKLVRWLYEMTYQRVVGYEQHGCGKEG 379
            LD +V +G +L   + +  CP     VFD SC   +V W   +T     G+ Q+   +E 
Sbjct: 1306 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLT-----GFVQNELPEEA 1360

Query: 380  I-LTNVK*RHSL--NKSTYVCISKACGYIQDLHMGEE 481
            I +     R++L  ++ T+V I  AC Y+   ++G++
Sbjct: 1361 IRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQ 1397


>tr|B2IYP0|B2IYP0_NOSP7 Hydroxymethylglutaryl-coenzyme A synthase C
           terminal domain protein OS=Nostoc punctiforme (strain
           ATCC 29133 / PCC 73102) GN=Npun_F3165 PE=4 SV=1
          Length = 408

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 317 LYEMTYQRVVGYEQHGCGKEGILTNVK*RHSLNKSTYVCISKACGYIQDLHMGEEFTMRL 496
           +YE  YQ+ V        +EGI    +   +   ST++C+     Y QDLH G+  ++  
Sbjct: 263 IYEENYQKKV--------QEGIYFAQQVGSTYGSSTFLCLLSLLHYAQDLHAGDRISIFA 314

Query: 497 LGRG 508
            G G
Sbjct: 315 YGSG 318


>tr|A6DI99|A6DI99_9BACT Putative uncharacterized protein
           OS=Lentisphaera araneosa HTCC2155 GN=LNTAR_09289 PE=4
           SV=1
          Length = 209

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 368 HSHVVHILQLFDMSSRTTNVQVSRDNSNQRLYGDTTLVKTKPCQE 234
           H  ++H L+    + +  ++ V+RD    +LY D  L+ T PC E
Sbjct: 115 HHRIMHSLKDQKYNRKWIHILVTRDKKEVKLYIDNVLIDTSPCPE 159