BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918727|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_G10.
         (559 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila mela...    41   0.005
sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii...    40   0.008
sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens...    40   0.008
sp|Q32P51|ROA1L_HUMAN Heterogeneous nuclear ribonucleoprotein A1...    40   0.008
sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabid...    40   0.008
sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15...    40   0.010
sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus trop...    40   0.010
sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein ...    39   0.013
sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B...    39   0.017
sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus...    39   0.023
sp|Q5ZLN5|TADBP_CHICK TAR DNA-binding protein 43 OS=Gallus gallu...    39   0.023
sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis...    39   0.023
sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus G...    39   0.023
sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens G...    39   0.023
sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 ...    38   0.030
sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 ...    38   0.030
sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rat...    38   0.030
sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=M...    38   0.030
sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=H...    38   0.030
sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 ...    38   0.039
sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 ...    38   0.039
sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 ...    38   0.039
sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 ...    38   0.039
sp|P0C7M2|RA1L3_HUMAN Putative heterogeneous nuclear ribonucleop...    38   0.039
sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1...    37   0.051
sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1,...    37   0.051
sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-...    37   0.051
sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-...    37   0.051
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor 64 kDa subunit...    37   0.051
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor 64 kDa subunit...    37   0.051

>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila
           melanogaster GN=sqd PE=1 SV=3
          Length = 344

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 17/36 (47%), Positives = 27/36 (75%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDKE 1
           KIFVG +  E + EE++ YFG+FG +++V +P DK+
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQ 172



 Score = 33.9 bits (76), Expect = 0.56
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDKE 1
           RK+FVG +  E T +E+R +FGK+G +  + +  D +
Sbjct: 56  RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQ 92


>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii
           GN=TARDBP PE=2 SV=1
          Length = 414

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 15/34 (44%), Positives = 26/34 (76%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPK 10
           RK+FVGR   + T +E+R +F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224


>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens
           GN=TARDBP PE=1 SV=1
          Length = 414

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 15/34 (44%), Positives = 26/34 (76%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPK 10
           RK+FVGR   + T +E+R +F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224


>sp|Q32P51|ROA1L_HUMAN Heterogeneous nuclear ribonucleoprotein
           A1-like protein OS=Homo sapiens GN=HNRNPA1L PE=2 SV=2
          Length = 320

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAET-HQLGGATVAVDRATPKEE 421
           D+GS   RG  F+ F+D +SVDKI+ +  H + G    V +A PK+E
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185



 Score = 32.0 bits (71), Expect = 2.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           RK+F+G +  E T E +R +F ++G L D  + +D
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 48


>sp|O04425|FCA_ARATH Flowering time control protein FCA
           OS=Arabidopsis thaliana GN=FCA PE=2 SV=1
          Length = 747

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDK 4
           K+FVG +P  AT EE+R YF + G +L+V L KDK
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDK 155



 Score = 33.1 bits (74), Expect = 0.96
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDK 4
           K+FVG +  +AT +EV   F +FG + DVYL +D+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDE 246


>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15
           OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1
          Length = 474

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKS 409
           D  +   RG GFL F++ + V+++M++ H L G  +   RA P+EE  K+
Sbjct: 197 DSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEKT 246



 Score = 38.5 bits (88), Expect = 0.023
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDKE 1
           K+FVG +P + T EE R +F +FG +LD  L  DK+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKD 283



 Score = 35.4 bits (80), Expect = 0.19
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETH-QLGGATVAVDRATPKEEGGKSLDKLGNLPY 382
           DK +   RG GF+ +E+  +V+  M++ +  + G  V V RATPK     S D+  +  +
Sbjct: 281 DKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYH 340

Query: 381 GVFNSY 364
           G  N Y
Sbjct: 341 GNANPY 346



 Score = 30.8 bits (68), Expect = 4.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           K+F+G +  E T + +R YF +FG +LD  + +D
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197


>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus
           tropicalis GN=tardbp PE=2 SV=1
          Length = 409

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 15/34 (44%), Positives = 26/34 (76%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPK 10
           RK+FVGR   + + EE+R +F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPK 224


>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4
           OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1
          Length = 534

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKS 409
           D  +   RG GFL FE   SVD+++   H L G  +   RA P++E  K+
Sbjct: 193 DPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKT 242



 Score = 33.5 bits (75), Expect = 0.73
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           K+F+G +  + T + +R YFGK+G + D+ + KD
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD 193


>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B
           OS=Mus musculus GN=Hnrnpab PE=1 SV=1
          Length = 285

 Score = 38.9 bits (89), Expect = 0.017
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           +KIFVG +  EAT E++R YFG+FG +  + LP D
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPID 193



 Score = 33.1 bits (74), Expect = 0.96
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIM-AETHQLGGATVAVDRA 436
           D  +   RG GF++F+DS SV+K++  + H+L G  +   +A
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKA 150


>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus
           GN=Tardbp PE=1 SV=1
          Length = 414

 Score = 38.5 bits (88), Expect = 0.023
 Identities = 15/34 (44%), Positives = 26/34 (76%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPK 10
           RK+FVGR   + T EE++ +F ++G ++DV++PK
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918727|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_G10.
         (559 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LKC6|B8LKC6_PICSI Putative uncharacterized protein OS=Picea...   118   2e-25
tr|B6U275|B6U275_MAIZE Heterogeneous nuclear ribonucleoprotein 2...   102   1e-20
tr|B6T9S2|B6T9S2_MAIZE Heterogeneous nuclear ribonucleoprotein 2...   101   3e-20
tr|B4FE67|B4FE67_MAIZE Putative uncharacterized protein OS=Zea m...   101   3e-20
tr|A9U4M7|A9U4M7_PHYPA Predicted protein (Fragment) OS=Physcomit...    84   4e-15
tr|B8AXP7|B8AXP7_ORYSI Putative uncharacterized protein OS=Oryza...    82   3e-14
tr|A9REQ3|A9REQ3_PHYPA Predicted protein (Fragment) OS=Physcomit...    81   4e-14
tr|B7FL75|B7FL75_MEDTR Putative uncharacterized protein OS=Medic...    79   2e-13
tr|Q94CQ1|Q94CQ1_ORYSJ Putative RNA-binding like protein OS=Oryz...    74   4e-12
tr|Q5JKI1|Q5JKI1_ORYSJ cDNA clone:001-035-H04, full insert seque...    74   4e-12
tr|Q0JG34|Q0JG34_ORYSJ Os01g0945800 protein (Fragment) OS=Oryza ...    74   4e-12
tr|B8A940|B8A940_ORYSI Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|A3A1G9|A3A1G9_ORYSJ Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|Q94AC3|Q94AC3_ARATH AT4g36960/C7A10_400 OS=Arabidopsis thalia...    66   1e-09
tr|A2IBF1|A2IBF1_BRAJU RNA-binding protein (Fragment) OS=Brassic...    65   2e-09
tr|A7PLA4|A7PLA4_VITVI Chromosome chr7 scaffold_20, whole genome...    57   5e-07
tr|A5BFC4|A5BFC4_VITVI Putative uncharacterized protein OS=Vitis...    57   5e-07
tr|A8J8S4|A8J8S4_CHLRE RNA binding protein (Fragment) OS=Chlamyd...    55   2e-06
tr|A7R1X0|A7R1X0_VITVI Chromosome undetermined scaffold_383, who...    54   4e-06
tr|A7Q348|A7Q348_VITVI Chromosome chr12 scaffold_47, whole genom...    54   8e-06
tr|O23189|O23189_ARATH RNA-binding like protein OS=Arabidopsis t...    53   1e-05
tr|A7PLA5|A7PLA5_VITVI Chromosome chr7 scaffold_20, whole genome...    51   5e-05
tr|Q9SFD3|Q9SFD3_ARATH Putative RNA-binding protein OS=Arabidops...    48   4e-04
tr|Q94A00|Q94A00_ARATH Putative RNA-binding protein OS=Arabidops...    48   4e-04
tr|Q8W555|Q8W555_ARATH AT3g07810/F17A17_15 (Putative RNA-binding...    48   4e-04
tr|Q9SU99|Q9SU99_ARATH HnRNP-like protein OS=Arabidopsis thalian...    47   0.001
tr|Q8W569|Q8W569_ARATH AT4g26650/T15N24_100 OS=Arabidopsis thali...    47   0.001
tr|O23146|O23146_ARATH HnRNP-like protein OS=Arabidopsis thalian...    47   0.001
tr|A7P0F4|A7P0F4_VITVI Chromosome chr19 scaffold_4, whole genome...    46   0.001
tr|A5C205|A5C205_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001

>tr|B8LKC6|B8LKC6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 409

 Score =  118 bits (296), Expect = 2e-25
 Identities = 72/188 (38%), Positives = 95/188 (50%), Gaps = 4/188 (2%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKSLDKLGNLPYG 379
           +KGS+ HRGIGF+ FE S SVD++M+ETH LGGAT+AVDRATPKEE  K   K  +  YG
Sbjct: 128 EKGSKGHRGIGFITFESSGSVDRLMSETHMLGGATIAVDRATPKEESTKQWAKPVSGGYG 187

Query: 378 VFNSYLNAAARLXXXXXXXXXXPDYAGFEMXXXXXXXXXXXXXXNRPSMS----FGKSQL 211
            +N+Y+NAA R              +GF                + P        G S  
Sbjct: 188 AYNAYINAATRYGALGSATLYDHPSSGFRDGYASEVGGGYGSGNSWPPHGAGGMIGGSSY 247

Query: 210 GLSDHXXXXXXXXXXXXXXXXXXXXXXXXXXLGRKIFVGRIPIEATMEEVRGYFGKFGPL 31
           G++D                           +G+KIFVGR+  EAT  ++R YF  FG +
Sbjct: 248 GMADR----------GAGYGPGSFSGPPPRGMGKKIFVGRLSQEATAGDLRRYFSNFGTV 297

Query: 30  LDVYLPKD 7
           +DVY+PKD
Sbjct: 298 VDVYVPKD 305



 Score = 40.4 bits (93), Expect = 0.066
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           D     HRG GF+ F +    D++   +H++ G  VA+D ATP ++
Sbjct: 305 DARRSGHRGFGFVTFAEDGVADRVSRRSHEILGQQVAIDSATPPDD 350



 Score = 39.7 bits (91), Expect = 0.11
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDK 4
           +IFV RIP   T +  R YF +FG + D+Y+PK+K
Sbjct: 95  RIFVARIPPSVTEDAFRKYFEEFGNIEDLYMPKEK 129



 Score = 35.0 bits (79), Expect = 2.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           D+ +   RG G+  F   E   K +   H L G  + V  ATPKEE
Sbjct: 40  DRATGRSRGFGYATFSSVEDAKKALDSEHFLNGRALEVKVATPKEE 85


>tr|B6U275|B6U275_MAIZE Heterogeneous nuclear ribonucleoprotein 27C
           OS=Zea mays PE=2 SV=1
          Length = 462

 Score =  102 bits (255), Expect = 1e-20
 Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 3/187 (1%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGK---SLDKLGNL 388
           + GS+ HRGIGF+ F+ +ESVD IM E+H+L G TV VDRATPKEE  +   S    G  
Sbjct: 228 EHGSKGHRGIGFITFQSAESVDSIMQESHELDGTTVVVDRATPKEEDVRYPPSRPSQGG- 286

Query: 387 PYGVFNSYLNAAARLXXXXXXXXXXPDYAGFEMXXXXXXXXXXXXXXNRPSMSFGKSQLG 208
            YG +N+Y++AA R             YA                  + P  ++G+   G
Sbjct: 287 -YGAYNAYISAATR-------------YA----------TLGAPTLYDHPGSAYGRGYYG 322

Query: 207 LSDHXXXXXXXXXXXXXXXXXXXXXXXXXXLGRKIFVGRIPIEATMEEVRGYFGKFGPLL 28
            S                            +G+KIFVGR+P EA  +++R YFG+FG ++
Sbjct: 323 SSQ--------------------------AVGKKIFVGRLPQEANTDDLRHYFGRFGRIV 356

Query: 27  DVYLPKD 7
           D Y+PKD
Sbjct: 357 DAYIPKD 363



 Score = 40.4 bits (93), Expect = 0.066
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE---GGKSLDKLGNL 388
           D     HRG GF+ F D    +++   +H++ G  VA+D A P E    GG  +D +   
Sbjct: 363 DPKRSGHRGFGFVTFADEGVAERVSRRSHEILGHEVAIDTAAPLENDSAGGGYIDPMD-- 420

Query: 387 PYGVFNS 367
            YG + S
Sbjct: 421 LYGAYGS 427



 Score = 35.4 bits (80), Expect = 2.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           ++ S   RG G++ F  ++    ++   H LG  T+ V  ATPKEE
Sbjct: 139 ERSSGRSRGFGYVTFASADDAKNVLDCEHVLGSRTLEVKIATPKEE 184



 Score = 34.7 bits (78), Expect = 3.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           +IFV RIP        R +F  FG +LD+Y+PK+
Sbjct: 195 RIFVARIPQSVDESMFRRHFEAFGEILDLYMPKE 228


>tr|B6T9S2|B6T9S2_MAIZE Heterogeneous nuclear ribonucleoprotein 27C
           OS=Zea mays PE=2 SV=1
          Length = 360

 Score =  101 bits (251), Expect = 3e-20
 Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 3/187 (1%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGK---SLDKLGNL 388
           + GS+ HRGIGF+ F+ +ESVD IM E+H+L G TV VDRATPK+E  +   S    G  
Sbjct: 126 EHGSKGHRGIGFITFQSAESVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQGG- 184

Query: 387 PYGVFNSYLNAAARLXXXXXXXXXXPDYAGFEMXXXXXXXXXXXXXXNRPSMSFGKSQLG 208
            YG +N+Y++AA R             YA                  + P  ++G+   G
Sbjct: 185 -YGAYNAYISAATR-------------YA----------TLGAPTLYDHPGSAYGRGYYG 220

Query: 207 LSDHXXXXXXXXXXXXXXXXXXXXXXXXXXLGRKIFVGRIPIEATMEEVRGYFGKFGPLL 28
            S                            +G+KIFVGR+P EA  +++R YFG+FG ++
Sbjct: 221 PSQ--------------------------AVGKKIFVGRLPQEANTDDLRQYFGRFGRIV 254

Query: 27  DVYLPKD 7
           D Y+PKD
Sbjct: 255 DAYIPKD 261



 Score = 38.1 bits (87), Expect = 0.33
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKE 424
           D     HRG GF+ F D    +++   +H++ G  VA+D A P E
Sbjct: 261 DPKRSGHRGFGFVTFADDGVAERVARRSHEILGHEVAIDTAAPLE 305



 Score = 35.4 bits (80), Expect = 2.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           ++ S   RG G++ F  ++    ++   H LG  T+ V  ATPKEE
Sbjct: 37  ERSSGRSRGFGYVTFASADDAKNVLDCEHVLGSRTLEVKVATPKEE 82



 Score = 34.7 bits (78), Expect = 3.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           +IFV RIP        R +F  FG +LD+Y+PK+
Sbjct: 93  RIFVARIPQSVDESMFRRHFEAFGEILDLYMPKE 126


>tr|B4FE67|B4FE67_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 360

 Score =  101 bits (251), Expect = 3e-20
 Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 3/187 (1%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGK---SLDKLGNL 388
           + GS+ HRGIGF+ F+ +ESVD IM E+H+L G TV VDRATPK+E  +   S    G  
Sbjct: 126 EHGSKGHRGIGFITFQSAESVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQGG- 184

Query: 387 PYGVFNSYLNAAARLXXXXXXXXXXPDYAGFEMXXXXXXXXXXXXXXNRPSMSFGKSQLG 208
            YG +N+Y++AA R             YA                  + P  ++G+   G
Sbjct: 185 -YGAYNAYISAATR-------------YA----------TLGAPTLYDHPGSAYGRGYYG 220

Query: 207 LSDHXXXXXXXXXXXXXXXXXXXXXXXXXXLGRKIFVGRIPIEATMEEVRGYFGKFGPLL 28
            S                            +G+KIFVGR+P EA  +++R YFG+FG ++
Sbjct: 221 PSQ--------------------------AVGKKIFVGRLPQEANTDDLRQYFGRFGRIV 254

Query: 27  DVYLPKD 7
           D Y+PKD
Sbjct: 255 DAYIPKD 261



 Score = 38.1 bits (87), Expect = 0.33
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKE 424
           D     HRG GF+ F D    +++   +H++ G  VA+D A P E
Sbjct: 261 DPKRSGHRGFGFVTFADDGVAERVARRSHEILGHEVAIDTAAPLE 305



 Score = 35.4 bits (80), Expect = 2.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           ++ S   RG G++ F  ++    ++   H LG  T+ V  ATPKEE
Sbjct: 37  ERSSGRSRGFGYVTFASADDAKNVLDCEHVLGSRTLEVKVATPKEE 82



 Score = 34.7 bits (78), Expect = 3.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           +IFV RIP        R +F  FG +LD+Y+PK+
Sbjct: 93  RIFVARIPQSVDESMFRRHFEAFGEILDLYMPKE 126


>tr|A9U4M7|A9U4M7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_156290 PE=4 SV=1
          Length = 382

 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 12/81 (14%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGK----------- 412
           D+GS+AHRGIGF+ FE+ ESVD +M ETH+LGG+T+AVDRATPKE+G K           
Sbjct: 119 DQGSKAHRGIGFVTFENPESVDNLMNETHELGGSTIAVDRATPKEDGVKTWGRGFHGGNQ 178

Query: 411 -SLDKLGNLPYGVFNSYLNAA 352
            S    G+  YG +  Y NAA
Sbjct: 179 NSASNAGSGAYGAYGVYTNAA 199



 Score = 50.4 bits (119), Expect = 6e-05
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = -2

Query: 114 GRKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           G KIFVGR+P EA  E++R YF  FG + DVY+PKD
Sbjct: 230 GTKIFVGRLPPEANAEDLRRYFNNFGRISDVYVPKD 265



 Score = 44.7 bits (104), Expect = 0.003
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKSLDKLGNLPY 382
           D    +HRG GF+ F D  + +++    H++ G  +AVDRA P+       D+  N+PY
Sbjct: 265 DAKKTSHRGFGFVTFSDEGAAERVALRNHEILGHQIAVDRAAPQ-------DETANVPY 316



 Score = 42.7 bits (99), Expect = 0.013
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDK 4
           ++FV RIP   T E  R YF K+G L D Y+PKD+
Sbjct: 86  RVFVARIPPSVTDEAFRSYFEKYGTLTDAYMPKDQ 120



 Score = 38.1 bits (87), Expect = 0.33
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           D+G+   RG G++ F   E   K ++  H L G  + V  ATPKEE
Sbjct: 31  DRGTGRSRGFGYVTFAAVEDAKKAVSTQHSLNGRMLEVKVATPKEE 76


>tr|B8AXP7|B8AXP7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19737 PE=4 SV=1
          Length = 297

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 57/181 (31%), Positives = 82/181 (45%)
 Frame = -2

Query: 549 SQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKSLDKLGNLPYGVFN 370
           S++HRGIGF+ F  +E VD IM ETH+L G TVAVDRATP         K+ +  + +FN
Sbjct: 47  SKSHRGIGFITFRSAECVDNIMQETHELDGTTVAVDRATP---------KVVSNTHPLFN 97

Query: 369 SYLNAAARLXXXXXXXXXXPDYAGFEMXXXXXXXXXXXXXXNRPSMSFGKSQLGLSDHXX 190
              N+   L                +M              + P  ++G+  +G S    
Sbjct: 98  --YNSVDALCIYDNAFFPTNR---MKMLGTPQGELFRATSYDHPGPAYGRGHIGGS---- 148

Query: 189 XXXXXXXXXXXXXXXXXXXXXXXXLGRKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPK 10
                                    G+KIFVGR+P EA  +++  YFG+FG ++D Y+PK
Sbjct: 149 ----------------------LGTGKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYIPK 186

Query: 9   D 7
           D
Sbjct: 187 D 187



 Score = 42.0 bits (97), Expect = 0.023
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKE--EGGKSLDKLGNL- 388
           D     H G GF+ F D    D++   +H++ G  VAVD A P E   GG  L+      
Sbjct: 187 DPKRSGHGGFGFVTFADDGVADRVAQRSHEILGQEVAVDTAEPLEGGSGGGYLEPAEAYG 246

Query: 387 PYGVFNSYL 361
           PYG + S L
Sbjct: 247 PYGAYGSLL 255



 Score = 35.0 bits (79), Expect = 2.8
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           +IFV RIP      + R +F  FG ++D+Y+PK+
Sbjct: 11  RIFVARIPQSVDESKFRRHFEAFGEIIDLYMPKE 44


>tr|A9REQ3|A9REQ3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_112860 PE=4 SV=1
          Length = 380

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 12/81 (14%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGK----------- 412
           D+GS+AHRGIGF+ FE  ESVD++M ETH+LGG+T+AVDRATPKE+G K           
Sbjct: 121 DQGSKAHRGIGFVTFEIPESVDRLMNETHELGGSTIAVDRATPKEDGVKTWGRGFHGGNQ 180

Query: 411 -SLDKLGNLPYGVFNSYLNAA 352
            S    G+  YG +  Y N A
Sbjct: 181 NSGSNAGSGSYGAYGVYTNTA 201



 Score = 50.4 bits (119), Expect = 6e-05
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = -2

Query: 114 GRKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           G KIFVGR+P EA  E++R YF  FG + DVY+PKD
Sbjct: 235 GTKIFVGRLPPEANAEDLRRYFNNFGRISDVYVPKD 270



 Score = 45.4 bits (106), Expect = 0.002
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKSLDKLGNLPY 382
           D    +HRG GF+ F D  + +++    H++ G  +AVDRA P+       D++ N+PY
Sbjct: 270 DAKKTSHRGFGFVTFSDEGAAERVALRNHEILGHQIAVDRAAPQ-------DEVANVPY 321



 Score = 42.7 bits (99), Expect = 0.013
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDK 4
           ++FV RIP   T E  R YF K+G L D Y+PKD+
Sbjct: 88  RVFVARIPPSVTDEAFRSYFEKYGTLTDAYMPKDQ 122



 Score = 38.5 bits (88), Expect = 0.25
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           D+G+   RG G++ F   E   K ++  H L G  + V  ATPKEE
Sbjct: 33  DRGTGRSRGFGYVTFATVEDAKKTVSTQHSLNGRMLEVKVATPKEE 78


>tr|B7FL75|B7FL75_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 397

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 36/72 (50%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKSLDKLG-NLPY 382
           D+GS+ HRGIGF+ F ++ESV+ +M+ETH+LGG+ V VDRATPKE+  K   ++     Y
Sbjct: 126 DQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGY 185

Query: 381 GVFNSYLNAAAR 346
           G +N+Y++ A R
Sbjct: 186 GAYNAYISTATR 197



 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 28/35 (80%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           +KIFVGR+P EA  E++R YFG+FG + DV +P+D
Sbjct: 225 KKIFVGRLPPEANSEDLRQYFGRFGRIEDVCIPRD 259



 Score = 42.0 bits (97), Expect = 0.023
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKSLDKLGNLPYG 379
           D     HRG GF+ F D    D++    H++ G  VA+D ATP ++   S + + N    
Sbjct: 259 DPKRTGHRGFGFVTFADEGVADRVSLRPHEICGHEVAIDSATPVDDARPSGNFMMNNSME 318

Query: 378 VFNSY 364
            F  Y
Sbjct: 319 SFGGY 323



 Score = 37.7 bits (86), Expect = 0.43
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 108 KIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKDK 4
           +IFV RIP   T E  R +F K+G + D+ +PKD+
Sbjct: 93  RIFVARIPPSVTEETFRSHFEKYGDITDLCMPKDQ 127


>tr|Q94CQ1|Q94CQ1_ORYSJ Putative RNA-binding like protein OS=Oryza
           sativa subsp. japonica GN=P0660F12.29 PE=4 SV=1
          Length = 523

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKSLDKLGNLP-- 385
           + GS+ HRGIGF+ F+ +ESVD IM ++H+L G TV VDRATPK+E  +     G     
Sbjct: 286 EHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGASQGG 345

Query: 384 YGVFNSYLNAAAR 346
           YG +N+Y++AA R
Sbjct: 346 YGAYNAYISAATR 358



 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           +KIFVGR+P EA  E++R YFGKFG ++D Y+PKD
Sbjct: 390 KKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKD 424



 Score = 40.8 bits (94), Expect = 0.050
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKE--EGGKSLDKLGNLP 385
           D     HRG GF+ F D    D++   +H++ G  VA+D A P E   GG  ++ +    
Sbjct: 424 DPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVAIDTAAPLEGDSGGGYMEPMD--L 481

Query: 384 YGVFNS 367
           YG + S
Sbjct: 482 YGAYGS 487



 Score = 36.2 bits (82), Expect = 1.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           ++ S   RG G++ F  ++    ++   H LG  T+ V  ATPKEE
Sbjct: 197 ERSSGRSRGFGYVTFSSADDAKNVLECEHVLGNRTLEVKIATPKEE 242


>tr|Q5JKI1|Q5JKI1_ORYSJ cDNA clone:001-035-H04, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0614D08.35 PE=2 SV=1
          Length = 363

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEEGGKSLDKLGNLP-- 385
           + GS+ HRGIGF+ F+ +ESVD IM ++H+L G TV VDRATPK+E  +     G     
Sbjct: 126 EHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGASQGG 185

Query: 384 YGVFNSYLNAAAR 346
           YG +N+Y++AA R
Sbjct: 186 YGAYNAYISAATR 198



 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = -2

Query: 111 RKIFVGRIPIEATMEEVRGYFGKFGPLLDVYLPKD 7
           +KIFVGR+P EA  E++R YFGKFG ++D Y+PKD
Sbjct: 230 KKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKD 264



 Score = 40.8 bits (94), Expect = 0.050
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKE--EGGKSLDKLGNLP 385
           D     HRG GF+ F D    D++   +H++ G  VA+D A P E   GG  ++ +    
Sbjct: 264 DPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVAIDTAAPLEGDSGGGYMEPMD--L 321

Query: 384 YGVFNS 367
           YG + S
Sbjct: 322 YGAYGS 327



 Score = 36.2 bits (82), Expect = 1.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 558 DKGSQAHRGIGFLIFEDSESVDKIMAETHQLGGATVAVDRATPKEE 421
           ++ S   RG G++ F  ++    ++   H LG  T+ V  ATPKEE
Sbjct: 37  ERSSGRSRGFGYVTFSSADDAKNVLECEHVLGNRTLEVKIATPKEE 82