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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918715
Clone id YMU001_000116_F09
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTTGCAATAGCCTTTTCACATAAATTTCAATCTGAAAGAGAAATGAAATACAAACAGGAT
AATAGAAACCAAAGAAGCTTGCCCATGCCTCGCAACAAATTCCATGGGGGCGAGGTACGG
CATGAGGTTTTCCTACATGTTTCGTAAACAGACCATCTATCATCCACCATCTGTTCTTGG
CGCATACACTCTCATGCTCTCACTCTGATCCCCTTCATGCAACAAGCCCCTCTCTTTTCG
TCCTGGTGTAGCATAGTGGTGCAACACATCGTGGTGATGGACAACCATGGATGGTTGCTC
TTCAACCAAATCTACTAGAACGTGCCCTGCTTAATAGAATCTTCGTTCGCCTCTCTAAGT
GCAGCTTCATTGAGGTACTTCTCAGCCAATTGCACCCTTTTCACGTTCTCTTGCTCCTTC
A
■■Homology search results ■■ -
sp_hit_id O98997
Definition sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus
Align length 34
Score (bit) 57.0
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918715|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_F09.
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ...    57   3e-08
sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase ...    57   3e-08
sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase...    56   6e-08
sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase ...    55   8e-08
sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase...    55   1e-07
sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase ...    54   3e-07
sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase...    53   5e-07
sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ...    52   9e-07
sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase...    51   2e-06
sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase ...    50   4e-06
sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase ...    50   5e-06
sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase...    49   6e-06
sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase...    48   2e-05
sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase ...    47   3e-05
sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase ...    32   1.3  
sp|Q48NT5|SURA_PSE14 Chaperone surA OS=Pseudomonas syringae pv. ...    29   6.4  
sp|Q4ZMG7|SURA_PSEU2 Chaperone surA OS=Pseudomonas syringae pv. ...    29   8.4  
sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caeno...    29   8.4  

>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2
           SV=2
          Length = 439

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 27/34 (79%), Positives = 31/34 (91%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KYLNEAAL  ANED+IK G+F
Sbjct: 404 QEQENVKRVQLADKYLNEAALGNANEDAIKSGSF 437


>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3
          Length = 433

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           EQENVKRVQLA+KYLNEAAL EANED++K G+F
Sbjct: 399 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431


>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 2, chloroplastic OS=Larrea tridentata GN=RCA2
           PE=2 SV=1
          Length = 435

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 25/34 (73%), Positives = 33/34 (97%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KY++EAAL +AN+D+IK+GTF
Sbjct: 402 EEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435


>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1
           PE=2 SV=1
          Length = 441

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA++YLNEAAL  ANED+IK G+F
Sbjct: 406 QEQENVKRVQLADQYLNEAALGNANEDAIKSGSF 439


>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 1, chloroplastic OS=Larrea tridentata GN=RCA1
           PE=2 SV=1
          Length = 476

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KY++EAAL +AN D+IK+GTF
Sbjct: 402 QEQENVKRVQLADKYMSEAALGDANNDAIKRGTF 435


>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Oryza sativa subsp. japonica
           GN=RCA PE=1 SV=2
          Length = 466

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           KEQENVKRVQLAE+YL+EAAL +AN D++K G+F
Sbjct: 393 KEQENVKRVQLAEQYLSEAALGDANSDAMKTGSF 426


>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase
           activase B, chloroplastic OS=Hordeum vulgare GN=RCAB
           PE=2 SV=1
          Length = 425

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 24/34 (70%), Positives = 31/34 (91%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KYL+EAAL +AN+D++K G F
Sbjct: 389 QEQENVKRVQLADKYLSEAALGQANDDAMKTGAF 422


>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Malus domestica GN=RCA PE=2
           SV=1
          Length = 437

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KYL+EAAL +AN D++  GTF
Sbjct: 402 QEQENVKRVQLADKYLSEAALGDANSDAMNTGTF 435


>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase
           activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
          Length = 442

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KYL EAAL +AN D+I  G+F
Sbjct: 406 QEQENVKRVQLADKYLKEAALGDANADAINNGSF 439


>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Arabidopsis thaliana GN=RCA
           PE=1 SV=2
          Length = 474

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           EQENVKRVQLAE YL++AAL +AN D+I +GTF
Sbjct: 403 EQENVKRVQLAETYLSQAALGDANADAIGRGTF 435
tr_hit_id Q9AXG0
Definition tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium hirsutum
Align length 33
Score (bit) 57.8
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918715|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_F09.
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...    58   3e-07
tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase ...    58   3e-07
tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment) OS=Goss...    58   3e-07
tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...    58   3e-07
tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genom...    58   3e-07
tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate car...    57   3e-07
tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate carboxylase/oxy...    57   5e-07
tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygena...    57   5e-07
tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Popul...    57   6e-07
tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Popul...    57   6e-07
tr|A9NX94|A9NX94_PICSI Putative uncharacterized protein OS=Picea...    57   6e-07
tr|A9NV87|A9NV87_PICSI Putative uncharacterized protein OS=Picea...    57   6e-07
tr|A7PNR4|A7PNR4_VITVI Chromosome chr8 scaffold_23, whole genome...    56   1e-06
tr|A9PJ06|A9PJ06_POPJC Putative uncharacterized protein OS=Popul...    55   1e-06
tr|A9PGU7|A9PGU7_POPTR Putative uncharacterized protein OS=Popul...    55   1e-06
tr|A9NXN4|A9NXN4_PICSI Putative uncharacterized protein OS=Picea...    55   1e-06
tr|Q06B51|Q06B51_ACERU Chloroplast ribulose-1,5-bisphosphate car...    55   2e-06
tr|Q06B50|Q06B50_ACERU Chloroplast ribulose-1,5-bisphosphate car...    55   2e-06
tr|Q06B49|Q06B49_ACERU Chloroplast ribulose-1,5-bisphosphate car...    55   2e-06
tr|Q06B48|Q06B48_ACERU Chloroplast ribulose-1,5-bisphosphate car...    55   2e-06
tr|Q9ATC2|Q9ATC2_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    54   3e-06
tr|Q9ATC1|Q9ATC1_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    54   3e-06
tr|Q9ATC0|Q9ATC0_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    54   3e-06
tr|Q9ATB9|Q9ATB9_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    54   3e-06
tr|A7NYV5|A7NYV5_VITVI Chromosome chr6 scaffold_3, whole genome ...    54   3e-06
tr|A5C3D4|A5C3D4_VITVI Putative uncharacterized protein OS=Vitis...    54   3e-06
tr|Q19RP2|Q19RP2_9MAGN Ribulose-1,5-bisphosphate carboxylase/oxy...    54   4e-06
tr|Q9AXG1|Q9AXG1_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...    54   5e-06
tr|Q9AT38|Q9AT38_ORYSA Ribulose-1,5-bisphosphate carboxylase act...    54   5e-06
tr|Q8L5W4|Q8L5W4_GOSHI Rubisco activase beta (Fragment) OS=Gossy...    54   5e-06

>tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 435

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 28/33 (84%), Positives = 31/33 (93%)
 Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           EQENVKRVQLA+KYL+EAAL EANEDSI +GTF
Sbjct: 364 EQENVKRVQLADKYLSEAALGEANEDSINRGTF 396


>tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase
           (Fragment) OS=Pisum sativum PE=2 SV=1
          Length = 50

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 27/34 (79%), Positives = 33/34 (97%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KYL+EAAL +ANED+IK+GTF
Sbjct: 17  QEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50


>tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment)
           OS=Gossypium hirsutum GN=RCA PE=4 SV=1
          Length = 76

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 28/33 (84%), Positives = 31/33 (93%)
 Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           EQENVKRVQLA+KYL+EAAL EANEDSI +GTF
Sbjct: 5   EQENVKRVQLADKYLSEAALGEANEDSINRGTF 37


>tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase alpha 2 OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 421

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 28/33 (84%), Positives = 31/33 (93%)
 Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           EQENVKRVQLA+KYL+EAAL EANEDSI +GTF
Sbjct: 350 EQENVKRVQLADKYLSEAALGEANEDSINRGTF 382


>tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018440001
           PE=4 SV=1
          Length = 438

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 27/34 (79%), Positives = 32/34 (94%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KYLNEAAL +ANED+IK G+F
Sbjct: 403 QEQENVKRVQLADKYLNEAALGDANEDAIKSGSF 436


>tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase (Fragment) OS=Morus alba
           var. multicaulis PE=2 SV=1
          Length = 246

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 27/34 (79%), Positives = 32/34 (94%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           +EQENVKRVQLA+KYL+EAAL +AN+DSIK GTF
Sbjct: 176 QEQENVKRVQLADKYLSEAALGDANQDSIKSGTF 209


>tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate
           carboxylase/oxygenase activase (Fragment) OS=Zea mays
           PE=2 SV=2
          Length = 308

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           EQENVKRVQLA+KYLNEAAL EANED++K G+F
Sbjct: 274 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 306


>tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygenase
           activase OS=Zea mays PE=2 SV=1
          Length = 433

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           EQENVKRVQLA+KYLNEAAL EANED++K G+F
Sbjct: 399 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431


>tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 361

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 26/34 (76%), Positives = 33/34 (97%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           KEQENVKRVQLA+KYL++AAL EAN+D+I++GTF
Sbjct: 326 KEQENVKRVQLADKYLSDAALGEANQDAIERGTF 359


>tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 475

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 26/34 (76%), Positives = 33/34 (97%)
 Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
           KEQENVKRVQLA+KYL++AAL EAN+D+I++GTF
Sbjct: 405 KEQENVKRVQLADKYLSDAALGEANQDAIERGTF 438