BP918631 |
Clone id |
YMU001_000115_G01 |
Library |
YMU01 |
Length |
520 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000115_G01. |
Accession |
BP918631 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CATTTCTACTGGAAGTGGTCGAAGGCGCCAGTCTGCCATTTGATACCTTTTGTCTGGAGT AAACCCACAGAACCGTGTTAGGAGGTGTGCGAGACCAAAACTTTCAAGCTCAAGAACCCT TGCCGCCTGGCCAGTGTCAAAAAGGTTGCAAACATAAATACCAAAATCACGTTGCAGCCA CATTACATCCAAGGTAGCCCCATGCATCACCTTTTGTATGGTGGAGCTTGAAAATATGTC ATACAAATAGCGACCAATGATACTCCGCAACTCTAAAGTATCAATGATGAAATCCTCGGA GCGTGTAGAAATTTGCATTAAACATGTCAGCCCTTGGAAAGACCTGAATTGATGATGTTC CAAGTCAACAGCTATTTCTCGCTCCAGAGCAAGTTTGGCAGCAGTGTCCTCCAGTAACGA GGGAGAATTTACAAAAGTGAAGGGTGTTTGTTCCAAAGATGCAGGCTGCTTGGGCTCAAT TACACCTATAGGAACATCCTCAAAAGTCATATTCTGTAAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q10146 |
Definition |
sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe |
Align length |
173 |
Score (bit) |
175.0 |
E-value |
1.0e-43 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QRH3 |
Definition |
tr|A7QRH3|A7QRH3_VITVI Chromosome chr8 scaffold_150, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
173 |
Score (bit) |
212.0 |
E-value |
8.0e-54 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918631|Adiantum capillus-veneris mRNA, clone: YMU001_000115_G01. (520 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QRH3|A7QRH3_VITVI Chromosome chr8 scaffold_150, whole genom... 212 8e-54 tr|Q9FFL2|Q9FFL2_ARATH Nucleolar protein-like OS=Arabidopsis tha... 210 4e-53 tr|Q8GWN3|Q8GWN3_ARATH Putative nucleolar protein OS=Arabidopsis... 210 4e-53 tr|A9LLI7|A9LLI7_ARATH RRP6-like protein 2 OS=Arabidopsis thalia... 210 4e-53 tr|Q7XE52|Q7XE52_ORYSJ Nucleolar protein, putative, expressed OS... 209 7e-53 tr|Q0IXH5|Q0IXH5_ORYSJ Os10g0437200 protein OS=Oryza sativa subs... 209 7e-53 tr|A9U244|A9U244_PHYPA Predicted protein (Fragment) OS=Physcomit... 208 1e-52 tr|Q10RJ0|Q10RJ0_ORYSJ Os03g0157800 protein OS=Oryza sativa subs... 207 2e-52 tr|B8ANU3|B8ANU3_ORYSI Putative uncharacterized protein OS=Oryza... 207 2e-52 tr|Q9SLI9|Q9SLI9_ARATH F20D21.26 protein OS=Arabidopsis thaliana... 194 3e-48 tr|Q0WVE8|Q0WVE8_ARATH Putative uncharacterized protein At1g5444... 194 3e-48 tr|A7SSB3|A7SSB3_NEMVE Predicted protein (Fragment) OS=Nematoste... 191 2e-47 tr|A3C529|A3C529_ORYSJ Putative uncharacterized protein OS=Oryza... 186 8e-46 tr|Q2HVC7|Q2HVC7_MEDTR HRDC; Polynucleotidyl transferase, Ribonu... 182 7e-45 tr|B6MSV6|B6MSV6_BRAFL Putative uncharacterized protein OS=Branc... 182 1e-44 tr|Q86JG9|Q86JG9_DICDI Similar to Homo sapiens (Human). PM-scl a... 178 1e-43 tr|Q55AW0|Q55AW0_DICDI 3'-5' exonuclease OS=Dictyostelium discoi... 178 1e-43 tr|B6MSM1|B6MSM1_BRAFL Putative uncharacterized protein OS=Branc... 177 2e-43 tr|Q16U73|Q16U73_AEDAE Putative uncharacterized protein OS=Aedes... 173 4e-42 tr|B0DUK1|B0DUK1_LACBS Predicted protein OS=Laccaria bicolor (st... 173 5e-42 tr|B0WA30|B0WA30_CULQU Exosome component 10 OS=Culex quinquefasc... 172 9e-42 tr|B6DTH8|B6DTH8_9EUGL Exosome subunit Rrp6P OS=Bodo saltans PE=... 171 3e-41 tr|Q4RVM3|Q4RVM3_TETNG Chromosome 9 SCAF14991, whole genome shot... 170 3e-41 tr|B8PGQ0|B8PGQ0_9APHY Predicted protein OS=Postia placenta Mad-... 170 3e-41 tr|Q5KK81|Q5KK81_CRYNE PM-scl autoantigen, putative OS=Cryptococ... 170 4e-41 tr|Q55W13|Q55W13_CRYNE Putative uncharacterized protein OS=Crypt... 170 4e-41 tr|B4DKG8|B4DKG8_HUMAN cDNA FLJ60634, highly similar to Exosome ... 169 6e-41 tr|B4DFE4|B4DFE4_HUMAN cDNA FLJ59618, highly similar to Exosome ... 169 6e-41 tr|B1AKQ0|B1AKQ0_HUMAN Exosome component 10 OS=Homo sapiens GN=E... 169 6e-41 tr|Q00XJ4|Q00XJ4_OSTTA Exosome 3'-5' exoribonuclease complex, su... 169 1e-40
>tr|A7QRH3|A7QRH3_VITVI Chromosome chr8 scaffold_150, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00003820001 PE=4 SV=1 Length = 421
Score = 212 bits (540), Expect = 8e-54 Identities = 103/173 (59%), Positives = 126/173 (72%) Frame = -2
Query: 519 LQNMTFEDVPIGVIEPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRS 340 L + F D IG + P P S+E TPF V L++ AAKL E AVDLEH+Q+RS Sbjct: 77 LSLLDFVDKNIGDLMPVMPPSIEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRS 136
Query: 339 FQGLTCLMQISTRSEDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFG 160 FQGLTCLMQISTR+EDF++DTL+LR +G YL ++F T +KVMHGA D++WLQRDFG Sbjct: 137 FQGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFG 196
Query: 159 IYVCNLFDTGQAARVLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 IY+CN+FDTGQA+RVL+LE L HLL +CG T +K YQ DWRLRPLP EM Sbjct: 197 IYICNMFDTGQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEM 249
>tr|Q9FFL2|Q9FFL2_ARATH Nucleolar protein-like OS=Arabidopsis thaliana PE=4 SV=1 Length = 834
Score = 210 bits (534), Expect = 4e-53 Identities = 104/170 (61%), Positives = 123/170 (72%) Frame = -2
Query: 510 MTFEDVPIGVIEPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRSFQG 331 + F D + +EP +P LEQTPF FV L++ AKL E AVDLEH+Q+RSFQG Sbjct: 200 LDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQG 259
Query: 330 LTCLMQISTRSEDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFGIYV 151 LTCLMQISTR+ED+I+DT +LR IG YL +IF +KVMHGA D++WLQRDFGIYV Sbjct: 260 LTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYV 319
Query: 150 CNLFDTGQAARVLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 CNLFDTGQA+RVL LE L LL FCG T +K YQ ADWR+RPLP EM Sbjct: 320 CNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEM 369
>tr|Q8GWN3|Q8GWN3_ARATH Putative nucleolar protein OS=Arabidopsis thaliana GN=At5g35910/MIK22_22 PE=2 SV=1 Length = 578
Score = 210 bits (534), Expect = 4e-53 Identities = 104/170 (61%), Positives = 123/170 (72%) Frame = -2
Query: 510 MTFEDVPIGVIEPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRSFQG 331 + F D + +EP +P LEQTPF FV L++ AKL E AVDLEH+Q+RSFQG Sbjct: 237 LDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQG 296
Query: 330 LTCLMQISTRSEDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFGIYV 151 LTCLMQISTR+ED+I+DT +LR IG YL +IF +KVMHGA D++WLQRDFGIYV Sbjct: 297 LTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYV 356
Query: 150 CNLFDTGQAARVLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 CNLFDTGQA+RVL LE L LL FCG T +K YQ ADWR+RPLP EM Sbjct: 357 CNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEM 406
>tr|A9LLI7|A9LLI7_ARATH RRP6-like protein 2 OS=Arabidopsis thaliana GN=RRP6L2 PE=2 SV=1 Length = 870
Score = 210 bits (534), Expect = 4e-53 Identities = 104/170 (61%), Positives = 123/170 (72%) Frame = -2
Query: 510 MTFEDVPIGVIEPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRSFQG 331 + F D + +EP +P LEQTPF FV L++ AKL E AVDLEH+Q+RSFQG Sbjct: 237 LDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQG 296
Query: 330 LTCLMQISTRSEDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFGIYV 151 LTCLMQISTR+ED+I+DT +LR IG YL +IF +KVMHGA D++WLQRDFGIYV Sbjct: 297 LTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYV 356
Query: 150 CNLFDTGQAARVLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 CNLFDTGQA+RVL LE L LL FCG T +K YQ ADWR+RPLP EM Sbjct: 357 CNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEM 406
>tr|Q7XE52|Q7XE52_ORYSJ Nucleolar protein, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os10g30100 PE=4 SV=2 Length = 902
Score = 209 bits (532), Expect = 7e-53 Identities = 101/159 (63%), Positives = 120/159 (75%) Frame = -2
Query: 477 EPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRSFQGLTCLMQISTRS 298 EP +P +L+ TPFT V LE A KL E AVDLEH+ +RSFQGLTCLMQISTR+ Sbjct: 249 EPIKPPALDDTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRT 308
Query: 297 EDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFGIYVCNLFDTGQAAR 118 EDFI+DTL+LR +G YL +IF T +KVMHGA D++WLQRDFGIYVCNLFDTGQA+R Sbjct: 309 EDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASR 368
Query: 117 VLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 +L+++ L HLL FCG T +K YQ ADWRLRPLP EM Sbjct: 369 ILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEM 407
>tr|Q0IXH5|Q0IXH5_ORYSJ Os10g0437200 protein OS=Oryza sativa subsp. japonica GN=Os10g0437200 PE=4 SV=1 Length = 409
Score = 209 bits (532), Expect = 7e-53 Identities = 101/159 (63%), Positives = 120/159 (75%) Frame = -2
Query: 477 EPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRSFQGLTCLMQISTRS 298 EP +P +L+ TPFT V LE A KL E AVDLEH+ +RSFQGLTCLMQISTR+ Sbjct: 249 EPIKPPALDDTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRT 308
Query: 297 EDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFGIYVCNLFDTGQAAR 118 EDFI+DTL+LR +G YL +IF T +KVMHGA D++WLQRDFGIYVCNLFDTGQA+R Sbjct: 309 EDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASR 368
Query: 117 VLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 +L+++ L HLL FCG T +K YQ ADWRLRPLP EM Sbjct: 369 ILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEM 407
>tr|A9U244|A9U244_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_154562 PE=4 SV=1 Length = 515
Score = 208 bits (529), Expect = 1e-52 Identities = 99/159 (62%), Positives = 124/159 (77%), Gaps = 1/159 (0%) Frame = -2
Query: 474 PKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRSFQGLTCLMQISTRSE 295 P++P +++TP T +++ S L+D A K L EIAVDLE+H +RSFQG CLMQ+STRSE Sbjct: 211 PQEPRPVDETPLTVISTASELKDMAMKCRLAGEIAVDLENHNYRSFQGFVCLMQVSTRSE 270
Query: 294 DFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFGIYVCNLFDTG-QAAR 118 DFI+D L LRS +G L D+F+ + ++KVMHGA D+ WLQRDFGIYVCN+FDTG QAAR Sbjct: 271 DFIVDALALRSHMGPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAAR 330
Query: 117 VLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 VL+LE FGLA L+ RF PDKRYQ+ADWR+RPLP EM Sbjct: 331 VLQLEGFGLAFLMQRFLKINPDKRYQLADWRIRPLPAEM 369
>tr|Q10RJ0|Q10RJ0_ORYSJ Os03g0157800 protein OS=Oryza sativa subsp. japonica GN=Os03g0157800 PE=2 SV=1 Length = 600
Score = 207 bits (528), Expect = 2e-52 Identities = 105/168 (62%), Positives = 121/168 (72%) Frame = -2
Query: 504 FEDVPIGVIEPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRSFQGLT 325 F D + EP +PA LE TPFT V + L D A KL E AVDLEH+Q+RSFQGLT Sbjct: 124 FIDRNVPESEPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLT 183
Query: 324 CLMQISTRSEDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFGIYVCN 145 CLMQISTR+EDF++DTL+LR IG YL + F T +KVMHGA D+MWLQRDF IYVCN Sbjct: 184 CLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCN 243
Query: 144 LFDTGQAARVLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 LFDTGQA+RVL++E L HLL FCG T +K YQ ADWR RPL EM Sbjct: 244 LFDTGQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEM 291
>tr|B8ANU3|B8ANU3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10088 PE=4 SV=1 Length = 599
Score = 207 bits (528), Expect = 2e-52 Identities = 105/168 (62%), Positives = 121/168 (72%) Frame = -2
Query: 504 FEDVPIGVIEPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRSFQGLT 325 F D + EP +PA LE TPFT V + L D A KL E AVDLEH+Q+RSFQGLT Sbjct: 123 FIDRNVPESEPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLT 182
Query: 324 CLMQISTRSEDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFGIYVCN 145 CLMQISTR+EDF++DTL+LR IG YL + F T +KVMHGA D+MWLQRDF IYVCN Sbjct: 183 CLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCN 242
Query: 144 LFDTGQAARVLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLPVEM 1 LFDTGQA+RVL++E L HLL FCG T +K YQ ADWR RPL EM Sbjct: 243 LFDTGQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEM 290
>tr|Q9SLI9|Q9SLI9_ARATH F20D21.26 protein OS=Arabidopsis thaliana GN=F20D21.26 PE=4 SV=1 Length = 642
Score = 194 bits (492), Expect = 3e-48 Identities = 96/170 (56%), Positives = 118/170 (69%) Frame = -2
Query: 519 LQNMTFEDVPIGVIEPKQPASLEQTPFTFVNSPSLLEDTAAKLALEREIAVDLEHHQFRS 340 L M F D + + P +P LE+TPF V LED AA L E AVDLEH+Q+R+ Sbjct: 89 LSVMDFVDRNLSEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRT 148
Query: 339 FQGLTCLMQISTRSEDFIIDTLELRSIIGRYLYDIFSSSTIQKVMHGATLDVMWLQRDFG 160 FQGLTCLMQISTR+ED+I+D +L IG YL ++F +KV+HGA D++WLQRDFG Sbjct: 149 FQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFG 208
Query: 159 IYVCNLFDTGQAARVLELESFGLAHLLTRFCGFTPDKRYQMADWRLRPLP 10 IYVCNLFDTGQA+RVL+LE L LL +CG +K YQ ADWR+RPLP Sbjct: 209 IYVCNLFDTGQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLP 258
|