BP918623 |
Clone id |
YMU001_000115_F04 |
Library |
YMU01 |
Length |
410 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000115_F04. |
Accession |
BP918623 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACCTCATACTGATAAAAATAAGGCCAAATGGATCAATACCAAAGTGGCAGTACTTAGATC ATCATGGTACAGAGACTCAAGAAAGTTTTATGATAACTATGCAAACTTTGATTCAGAAGC AGAAATCTCTGAAGAAGCTGACCCTCCGAAGCAATTGGATGCTGAACAAATTCAAGCCCN AATTAAACTTGAAGCTATAAAGAAAGCATGGTTCAATCCAATCGACAGACAAATTCAGCA ATGGATCGATGATCCTACAAAGCTTCAAGTCTTTGCTCAAACAATAGATGATAAGCAGAC CCATGAAAAGATCTGAGAAGAATCATCTATACGGGCAAGGAAAAAGATAAGCAACCAGAA GAAGAATGGTTTTACCCAACAAACGCCCAACAGAAACCTCTAACAATACG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0U8U9 |
Definition |
sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcription subunit 10 OS=Phaeosphaeria nodorum |
Align length |
36 |
Score (bit) |
31.2 |
E-value |
1.7 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918623|Adiantum capillus-veneris mRNA, clone: YMU001_000115_F04. (410 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcriptio... 31 1.7 sp|P75400|COAE_MYCPN Dephospho-CoA kinase OS=Mycoplasma pneumoni... 31 1.7 sp|P46743|RT04_PROWI Ribosomal protein S4, mitochondrial OS=Prot... 31 2.2 sp|P31000|VIME_RAT Vimentin OS=Rattus norvegicus GN=Vim PE=1 SV=2 30 3.8 sp|P20152|VIME_MOUSE Vimentin OS=Mus musculus GN=Vim PE=1 SV=3 30 3.8 sp|P02544|VIME_MESAU Vimentin OS=Mesocricetus auratus GN=VIM PE=... 30 3.8 sp|P48616|VIME_BOVIN Vimentin OS=Bos taurus GN=VIM PE=1 SV=3 30 3.8 sp|A4G8E6|SYL_HERAR Leucyl-tRNA synthetase OS=Herminiimonas arse... 30 3.8 sp|Q5R1W8|VIME_PANTR Vimentin OS=Pan troglodytes GN=VIM PE=2 SV=4 30 5.0 sp|Q4R4X4|VIME_MACFA Vimentin OS=Macaca fascicularis GN=VIM PE=2... 30 5.0 sp|P08670|VIME_HUMAN Vimentin OS=Homo sapiens GN=VIM PE=1 SV=4 30 5.0 sp|P84198|VIME_CERAE Vimentin OS=Cercopithecus aethiops GN=VIM P... 30 5.0 sp|P09654|VIME_CHICK Vimentin OS=Gallus gallus GN=VIM PE=3 SV=2 29 6.5 sp|A6T239|SYL_JANMA Leucyl-tRNA synthetase OS=Janthinobacterium ... 29 6.5 sp|A1JPL5|RF2_YERE8 Peptide chain release factor 2 OS=Yersinia e... 29 6.5 sp|Q8JUX6|POLN_CHIKS Non-structural polyprotein OS=Chikungunya v... 29 6.5 sp|Q5K2K3|L_ISFV Large structural protein OS=Isfahan virus GN=L ... 29 6.5 sp|Q186R0|THIC_CLOD6 Thiamine biosynthesis protein thiC OS=Clost... 29 8.5 sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharo... 29 8.5 sp|A4R8N4|PAN1_MAGGR Actin cytoskeleton-regulatory complex prote... 29 8.5 sp|Q9V4W1|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster... 29 8.5 sp|Q15398|DLGP5_HUMAN Disks large-associated protein 5 OS=Homo s... 29 8.5
>sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcription subunit 10 OS=Phaeosphaeria nodorum GN=NUT2 PE=3 SV=1 Length = 133
Score = 31.2 bits (69), Expect = 1.7 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +3
Query: 30 GSIPKWQYLDHHGTETQESFMITMQTLIQKQKSLKK 137 G P++Q DH G+ TQE+ +Q+LIQ L + Sbjct: 8 GETPEFQSYDHRGSPTQEAMKREIQSLIQNLVKLSR 43
>sp|P75400|COAE_MYCPN Dephospho-CoA kinase OS=Mycoplasma pneumoniae GN=coaE PE=3 SV=1 Length = 200
Score = 31.2 bits (69), Expect = 1.7 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +2
Query: 41 KVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQIQAXI 184 ++AV+ + W D R F+D + +A+I ++A + +D EQ+Q I Sbjct: 109 EIAVMLNYW-NDYRPFFDEVIQIERDAKIVKQALKARGVDVEQVQKLI 155
>sp|P46743|RT04_PROWI Ribosomal protein S4, mitochondrial OS=Prototheca wickerhamii GN=RPS4 PE=3 SV=1 Length = 511
Score = 30.8 bits (68), Expect = 2.2 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%) Frame = +2
Query: 59 SSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQIQAXIKL----EAIKKAWFNPID 226 S + + RKF N FD++ EI+ D K L + + KL + FN D Sbjct: 317 SFFVSNKRKFKSNEVTFDNKKEITSAIDYTKYLQIKNSRKKYKLITLNNNLDSLSFNIFD 376
Query: 227 RQIQQWIDDPTKLQVFAQT---IDDKQTHE 307 ++I + L V Q I++K+T++ Sbjct: 377 KEILNSLSSKQNLPVNKQNIVEIENKKTNK 406
>sp|P31000|VIME_RAT Vimentin OS=Rattus norvegicus GN=Vim PE=1 SV=2 Length = 466
Score = 30.0 bits (66), Expect = 3.8 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Frame = +2
Query: 11 DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184 D + A INT+ R++ + ++ D +AN+ + E+ + + EQ+ Q Sbjct: 85 DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144
Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358 +L + + + RQ+ Q +D +++V + D + EK+ EE R + + Q Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQ 204
Query: 359 KKNGFTQQTPNRNL 400 F Q N +L Sbjct: 205 ---SFRQDVDNASL 215
>sp|P20152|VIME_MOUSE Vimentin OS=Mus musculus GN=Vim PE=1 SV=3 Length = 466
Score = 30.0 bits (66), Expect = 3.8 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Frame = +2
Query: 11 DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184 D + A INT+ R++ + ++ D +AN+ + E+ + + EQ+ Q Sbjct: 85 DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144
Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358 +L + + + RQ+ Q +D +++V + D + EK+ EE R + + Q Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQ 204
Query: 359 KKNGFTQQTPNRNL 400 F Q N +L Sbjct: 205 ---SFRQDVDNASL 215
>sp|P02544|VIME_MESAU Vimentin OS=Mesocricetus auratus GN=VIM PE=1 SV=2 Length = 465
Score = 30.0 bits (66), Expect = 3.8 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Frame = +2
Query: 11 DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184 D + A INT+ R++ + ++ D +AN+ + E+ + + EQ+ Q Sbjct: 84 DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 143
Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358 +L + + + RQ+ Q +D +++V + D + EK+ EE R + + Q Sbjct: 144 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQ 203
Query: 359 KKNGFTQQTPNRNL 400 F Q N +L Sbjct: 204 ---SFRQDVDNASL 214
>sp|P48616|VIME_BOVIN Vimentin OS=Bos taurus GN=VIM PE=1 SV=3 Length = 466
Score = 30.0 bits (66), Expect = 3.8 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Frame = +2
Query: 11 DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184 D + A INT+ R++ + ++ D +AN+ + E+ + + EQ+ Q Sbjct: 85 DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144
Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358 +L + + + RQ+ Q +D +++V + D + EK+ EE R + + Q Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQ 204
Query: 359 KKNGFTQQTPNRNL 400 F Q N +L Sbjct: 205 ---SFRQDVDNASL 215
>sp|A4G8E6|SYL_HERAR Leucyl-tRNA synthetase OS=Herminiimonas arsenicoxydans GN=leuS PE=3 SV=1 Length = 881
Score = 30.0 bits (66), Expect = 3.8 Identities = 22/61 (36%), Positives = 30/61 (49%) Frame = +2
Query: 200 KKAWFNPIDRQIQQWIDDPTKLQVFAQTIDDKQTHEKI*EESSIRARKKISNQKKNGFTQ 379 KK WFNP D Q++ +DD + V A +D+Q E I +K+S K NG Sbjct: 600 KKTWFNPADVQLE--LDDKGR-PVSAILNNDRQPVE-------IGGTEKMSKSKNNGIDP 649
Query: 380 Q 382 Q Sbjct: 650 Q 650
>sp|Q5R1W8|VIME_PANTR Vimentin OS=Pan troglodytes GN=VIM PE=2 SV=4 Length = 466
Score = 29.6 bits (65), Expect = 5.0 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Frame = +2
Query: 11 DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184 D + A INT+ R++ + ++ D +AN+ + E+ + + EQ+ Q Sbjct: 85 DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144
Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358 +L + + + RQ+ Q +D +++V + D + EK+ EE R + + Q Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQ 204
Query: 359 KKNGFTQQTPNRNL 400 F Q N +L Sbjct: 205 ---SFRQDVDNASL 215
>sp|Q4R4X4|VIME_MACFA Vimentin OS=Macaca fascicularis GN=VIM PE=2 SV=3 Length = 466
Score = 29.6 bits (65), Expect = 5.0 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Frame = +2
Query: 11 DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184 D + A INT+ R++ + ++ D +AN+ + E+ + + EQ+ Q Sbjct: 85 DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144
Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQ--TIDDKQTHEKI*EESSIRARKKISNQ 358 +L + + + RQ+ Q +D +++V T D + EK+ EE R + + Q Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEMLQREEAENTLQ 204
Query: 359 KKNGFTQQTPNRNL 400 F Q N +L Sbjct: 205 ---SFRQDVDNASL 215
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q886J0 |
Definition |
tr|Q886J0|Q886J0_PSESM Lipoprotein, putative OS=Pseudomonas syringae pv. tomato |
Align length |
100 |
Score (bit) |
35.8 |
E-value |
1.1 |
Report |
|