BP918556
Clone id YMU001_000114_H07
Library
Length 473
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGCATTGCATCTCTAGCGTGGATGAGGCTCCTTAGAGAAGGAATATTTTCATTTAAGAAA
CCCTCCTATTGAACTAATGTGATGCATTAACATGATTACATAGTGCACCCCCATGAGGAG
GACAATTCCTATCATGAGGATGAAATGATAGATAAGGGTGTGTCACCTTAACAGATCCAC
GTATGTTATACTGTATCATGAGACTCCAACCTCTTAGCGTCAAATACCAATAAGCAGTGT
GACCAATGTATGCCTTGAAAGAAATCTCTAGATCTAGCCTCAACATCCTGTGAATATTCA
TCACTACCTTGTTGGAAACACAAACCTTAAGTCCCATTGGTATTCGAAGGGCCTCCTTAA
GAGGAGGTAAACTTTCCAATAGCTTTATTCACAAGTCACGGTTACAATGCACGTGTCCAT
TAGTAGGCACACTCAATCCCTATCAAGTTGACATGTCCTTTGATGGGCGTGGG
■■Homology search results ■■ -
sp_hit_id Q54YL3
Definition sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
Align length 32
Score (bit) 30.0
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918556|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_H07.
(473 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=D... 30 5.4
sp|Q9B6E8|NU1M_YARLI NADH-ubiquinone oxidoreductase chain 1 OS=Y... 29 9.3

>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog
OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1
Length = 744

Score = 30.0 bits (66), Expect = 5.4
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2

Query: 331 LKVCVSNKVVMNIHRMLRLDLEISFKA-YIGH 239
+K C+ + +N+H+ +++D E+S KA Y GH
Sbjct: 125 IKDCMKKVIPVNLHQTIKVDEELSIKAYYAGH 156


>sp|Q9B6E8|NU1M_YARLI NADH-ubiquinone oxidoreductase chain 1
OS=Yarrowia lipolytica GN=ND1 PE=1 SV=1
Length = 341

Score = 29.3 bits (64), Expect = 9.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2

Query: 277 LDLEISFKAYIGHTAYWYLTLRGWSLMIQYNIRGSVKVTHPYLSF 143
L+L I F IG + L GWS +Y++ GS++ T +S+
Sbjct: 102 LNLGILFSLAIGSLGVFGSLLSGWSSNSKYSLLGSIRSTAQLISY 146


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918556|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_H07.
(473 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******