BP918549 |
Clone id |
YMU001_000114_G11 |
Library |
YMU01 |
Length |
504 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000114_G11. |
Accession |
BP918549 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GAGTCATCAATCTCTGATGAAGGTTCCTCTTGTCAGAGTAGCAACCTGGAGAACAATAAT GAGGTGTTGCTTGCTCACAAACCATCAAATGAGCTGGTGGATATGAAGCTTAGCAGGATT CGCACTGCAGAGACACTAAAGGAGAAGGCGGCCATGGTTGGTGCGTCTCCAAAGAGCAGA CACGAGCACAATGGCAATGAAGAGAACCTTGCCCACAGCACAGCAGCAAATAGGTTGGGG AAGAAGCATAGTGGTTTGCCTGCAAATACGCCTCGCAGATCTCTAAAACAGCAACCATCC AGTCCACGGTTGGCGAAGGGCAACCCAGGAAAGGTTCTGAGGCCTTGGTATTAGTAGGTC TTATTATGTATAAGTGTAATTTTGTCTCAAAAAGTACTGAATATAGTTGTTATAGCTTCA TGTAGAAGTGTTCTGCTGTGATACACAATTGAACAGAGGCAAATCGCCATTCTTTTAGGA AAAATTCGCGGTCGCGAATTCTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9J6K8 |
Definition |
sp|Q9J6K8|POLS_RUBVD Structural polyprotein OS=Rubella virus (strain Cendehill) |
Align length |
80 |
Score (bit) |
32.3 |
E-value |
1.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918549|Adiantum capillus-veneris mRNA, clone: YMU001_000114_G11. (483 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9J6K8|POLS_RUBVD Structural polyprotein OS=Rubella virus (st... 32 1.2 sp|P19725|POLS_RUBVR Structural polyprotein OS=Rubella virus (st... 32 1.5 sp|Q8VA10|POLS_RUBVN Structural polyprotein OS=Rubella virus (st... 32 1.5 sp|P08563|POLS_RUBVM Structural polyprotein OS=Rubella virus (st... 32 1.5 sp|P07566|POLS_RUBVT Structural polyprotein OS=Rubella virus (st... 32 2.0 sp|Q86T29|ZN605_HUMAN Zinc finger protein 605 OS=Homo sapiens GN... 32 2.0 sp|P08564|POLS_RUBVV Structural polyprotein OS=Rubella virus (st... 31 3.4 sp|Q99IE6|POLS_RUBVO Structural polyprotein OS=Rubella virus (st... 31 3.4 sp|Q8CIZ8|VWF_MOUSE von Willebrand factor OS=Mus musculus GN=Vwf... 31 3.4 sp|P04155|TFF1_HUMAN Trefoil factor 1 OS=Homo sapiens GN=TFF1 PE... 31 3.4 sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIR... 30 4.4 sp|O44783|SPY_DROME Protein sprouty OS=Drosophila melanogaster G... 30 7.5 sp|Q9Z2P5|RIPK3_RAT Receptor-interacting serine/threonine-protei... 30 7.5 sp|Q5BE22|PRP46_EMENI Pre-mRNA-splicing factor prp46 OS=Emericel... 30 7.5 sp|Q2GZN9|NST1_CHAGB Stress response protein NST1 OS=Chaetomium ... 30 7.5 sp|Q9NKV0|MLF_DROME Myeloid leukemia factor OS=Drosophila melano... 30 7.5 sp|P97399|DSPP_MOUSE Dentin sialophosphoprotein OS=Mus musculus ... 29 9.8
>sp|Q9J6K8|POLS_RUBVD Structural polyprotein OS=Rubella virus (strain Cendehill) PE=3 SV=1 Length = 1063
Score = 32.3 bits (72), Expect = 1.2 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Frame = +1
Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAANRLGKKHSG---LPANTPRRSL 285 R R + T + + P+ R + G + S A ++ G PA P R+ Sbjct: 41 RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRKDWSRAPPPPEERQEGRSQTPAPKPSRAP 100
Query: 286 KQQPSSPRLAKGNPGKVLRP 345 QQP PR+ G G RP Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120
>sp|P19725|POLS_RUBVR Structural polyprotein OS=Rubella virus (strain RA27/3 vaccine) PE=3 SV=2 Length = 1063
Score = 32.0 bits (71), Expect = 1.5 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Frame = +1
Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285 R R + T + + P+ R + G + S A + S PA P R+ Sbjct: 41 RQRDSSTTGDDSGRDSGGPRRRRGNRGRGQRRDWSRAPPPPEERQETRSQTPAPKPSRAP 100
Query: 286 KQQPSSPRLAKGNPGKVLRP 345 QQP PR+ G G RP Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120
>sp|Q8VA10|POLS_RUBVN Structural polyprotein OS=Rubella virus (strain RN-UK86) PE=3 SV=1 Length = 1063
Score = 32.0 bits (71), Expect = 1.5 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Frame = +1
Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285 R R + T + + P+ R + G + S A + S PA P R+ Sbjct: 41 RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRKDWSMAPPPPEERQESRSQTPAPKPSRAP 100
Query: 286 KQQPSSPRLAKGNPGKVLRP 345 QQP PR+ G G RP Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120
>sp|P08563|POLS_RUBVM Structural polyprotein OS=Rubella virus (strain M33) PE=1 SV=2 Length = 1063
Score = 32.0 bits (71), Expect = 1.5 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Frame = +1
Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285 R R + T + + P+ R + G + S A + S PA P R+ Sbjct: 41 RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRKDWSRAPPPPEERQESRSQTPAPKPSRAP 100
Query: 286 KQQPSSPRLAKGNPGKVLRP 345 QQP PR+ G G RP Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120
>sp|P07566|POLS_RUBVT Structural polyprotein OS=Rubella virus (strain Therien) PE=1 SV=1 Length = 1063
Score = 31.6 bits (70), Expect = 2.0 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Frame = +1
Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285 R R + T + + P+ R + G + S A + S PA P R+ Sbjct: 41 RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRRDWSRAPPPPEERQETRSQTPAPKPSRAP 100
Query: 286 KQQPSSPRLAKGNPGKVLRP 345 QQP PR+ G G RP Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120
>sp|Q86T29|ZN605_HUMAN Zinc finger protein 605 OS=Homo sapiens GN=ZNF605 PE=2 SV=1 Length = 641
Score = 31.6 bits (70), Expect = 2.0 Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 9/100 (9%) Frame = -3
Query: 274 EAYLQANHYASSPTYLLLCCGQGSLHCHCARVCSLETHQPWPPSPLVSLQCESC*ASYPP 95 E +L ANH + YL + CG+ + V TH P QC C ++ Sbjct: 155 EPWLTANHITHTGVYLCMECGR-FFNKKSQLVIHQRTHTGEKP-----YQCSECGKAFSQ 208
Query: 94 AHLMVCEQAT-----PHYCSPGCYSDKRN----LHQRLMT 2 L+ Q T PH CS + R LHQR+ T Sbjct: 209 KSLLTVHQRTHSGEKPHGCSECQKAFSRKSLLILHQRIHT 248
>sp|P08564|POLS_RUBVV Structural polyprotein OS=Rubella virus (strain TO-336) PE=3 SV=3 Length = 1063
Score = 30.8 bits (68), Expect = 3.4 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Frame = +1
Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285 R R + T + + P+ R + G + S A + S PA P R+ Sbjct: 41 RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQLRDWSRAPPPPEERQESRSQTPAPKPSRAP 100
Query: 286 KQQPSSPRLAKGNPGKVLRP 345 QQP PR+ G G RP Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120
>sp|Q99IE6|POLS_RUBVO Structural polyprotein OS=Rubella virus (strain TO-336 vaccine) PE=3 SV=1 Length = 1063
Score = 30.8 bits (68), Expect = 3.4 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Frame = +1
Query: 115 RIRTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAA---NRLGKKHSGLPANTPRRSL 285 R R + T + + P+ R + G + S A + S PA P R+ Sbjct: 41 RQRDSSTSGDDSGRDSGGPRRRRGNRGRGQLRDWSRAPPPPEERQESRSQTPAPKPSRAP 100
Query: 286 KQQPSSPRLAKGNPGKVLRP 345 QQP PR+ G G RP Sbjct: 101 PQQPQPPRMQTGRGGSAPRP 120
>sp|Q8CIZ8|VWF_MOUSE von Willebrand factor OS=Mus musculus GN=Vwf PE=1 SV=2 Length = 2813
Score = 30.8 bits (68), Expect = 3.4 Identities = 21/71 (29%), Positives = 28/71 (39%) Frame = -3
Query: 238 PTYLLLCCGQGSLHCHCARVCSLETHQPWPPSPLVSLQCESC*ASYPPAHLMVCEQATPH 59 P + L C QG ++ C C+L +SL E C VC + Sbjct: 645 PGFCALGCPQGQVYLQCGNSCNLTCRS-------LSLPDEEC--------SEVCLEGC-- 687
Query: 58 YCSPGCYSDKR 26 YC PG Y D+R Sbjct: 688 YCPPGLYQDER 698
>sp|P04155|TFF1_HUMAN Trefoil factor 1 OS=Homo sapiens GN=TFF1 PE=1 SV=1 Length = 84
Score = 30.8 bits (68), Expect = 3.4 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -2
Query: 332 FPGLPFANRGLDGCCFRD-LRGVFAGKPLCFFPN 234 FPG+ + GCCF D +RGV P CF+PN Sbjct: 43 FPGVTPSQCANKGCCFDDTVRGV----PWCFYPN 72
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9VBH0 |
Definition |
tr|A9VBH0|A9VBH0_MONBE Predicted protein OS=Monosiga brevicollis |
Align length |
68 |
Score (bit) |
35.4 |
E-value |
1.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918549|Adiantum capillus-veneris mRNA, clone: YMU001_000114_G11. (483 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9VBH0|A9VBH0_MONBE Predicted protein OS=Monosiga brevicollis... 35 1.4 tr|B2U8B8|B2U8B8_RALPJ Urate catabolism protein OS=Ralstonia pic... 34 3.1 tr|B6GVZ7|B6GVZ7_PENCH Pc06g00520 protein OS=Penicillium chrysog... 34 4.1 tr|A7CLP1|A7CLP1_BURPI Polysaccharide deacetylase OS=Ralstonia p... 33 5.4 tr|A1ZRL8|A1ZRL8_9SPHI Putative uncharacterized protein OS=Micro... 33 5.4 tr|A3CXG5|A3CXG5_METMJ Restriction endonuclease OS=Methanoculleu... 33 5.4 tr|B2KTD3|B2KTD3_9CNID Nematocyst outer wall antigen OS=Clytia h... 30 5.4 tr|Q4FV32|Q4FV32_PSYA2 RNAse E OS=Psychrobacter arcticus (strain... 33 7.0 tr|A4A9C5|A4A9C5_9GAMM Cell division protein FtsX OS=Congregibac... 33 7.0 tr|B8BNK0|B8BNK0_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.1
>tr|A9VBH0|A9VBH0_MONBE Predicted protein OS=Monosiga brevicollis GN=29569 PE=4 SV=1 Length = 897
Score = 35.4 bits (80), Expect = 1.4 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Frame = -3
Query: 277 CEAYLQANHYASSPTYLLLC--CGQGSLHC-----HCARVCSLETHQPWPPSPLVSLQCE 119 CEA Q N AS C C QGS +C C +C L P + +LQCE Sbjct: 534 CEATCQPNQMASCNPLTKQCEICSQGSPNCTQTKAECDAICDL----PHAKCNMQTLQCE 589
Query: 118 SC*ASYPP 95 SC S P Sbjct: 590 SCDISSDP 597
>tr|B2U8B8|B2U8B8_RALPJ Urate catabolism protein OS=Ralstonia pickettii (strain 12J) GN=Rpic_2260 PE=4 SV=1 Length = 320
Score = 34.3 bits (77), Expect = 3.1 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%) Frame = -3
Query: 472 EWRFASVQLCITAEHFYMKL*QLYSVLFE--------------TKLHLYII-RPTNTKAS 338 + RFAS Q TA+HFY L + VL+E +H ++ RP +A Sbjct: 220 DMRFASPQGFNTADHFYQYLKDAFDVLYEEGDPNGLAQPKMLSIGMHCRLLGRPARFRAL 279
Query: 337 EPFLG-CPSPTVDWMVAVLEICEAYLQANHYASSP 236 + FL S W+ ++I + ++Q + YA P Sbjct: 280 QRFLDYVQSHDKVWICRRIDIAQHWIQNHPYAKQP 314
>tr|B6GVZ7|B6GVZ7_PENCH Pc06g00520 protein OS=Penicillium chrysogenum Wisconsin 54-1255 GN=Pc06g00520 PE=4 SV=1 Length = 733
Score = 33.9 bits (76), Expect = 4.1 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = +1
Query: 160 GASPKSRHEHNGNEENLAHSTAANRLGKKHSGLPANTPRRSLKQQPSS 303 GASP+S H G+ N ++S++ + + K S LP+ PR +P S Sbjct: 110 GASPRSPHLAAGSVSNSSNSSSRSYVSKDDSALPSRQPRSDQPLRPLS 157
>tr|A7CLP1|A7CLP1_BURPI Polysaccharide deacetylase OS=Ralstonia pickettii 12D GN=Rpic12DDRAFT_0674 PE=4 SV=1 Length = 329
Score = 33.5 bits (75), Expect = 5.4 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%) Frame = -3
Query: 472 EWRFASVQLCITAEHFYMKL*QLYSVLFE--------------TKLHLYII-RPTNTKAS 338 + RFAS Q TA+HFY L + VL+E +H ++ RP +A Sbjct: 229 DMRFASPQGFNTADHFYQYLKDAFDVLYEEGDPNGLAQPKMLSIGMHCRLLGRPGRFRAL 288
Query: 337 EPFLG-CPSPTVDWMVAVLEICEAYLQANHYASSP 236 + FL S W+ ++I + ++Q + YA P Sbjct: 289 QRFLDYVQSHDKVWICRRIDIAQHWIQNHPYAKQP 323
>tr|A1ZRL8|A1ZRL8_9SPHI Putative uncharacterized protein OS=Microscilla marina ATCC 23134 GN=M23134_03574 PE=4 SV=1 Length = 189
Score = 33.5 bits (75), Expect = 5.4 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -2
Query: 470 MAICLCSIVYHSRTLLHEAITTIFSTF*DKITLIHNKTY*YQGLRTFPGLPFANRG 303 + CL +YH + E + T F F I L++ +GL FP PF G Sbjct: 16 LLFCLVYAIYHPQFFTAEGLQTFFQQFEQHILLVYLLLSIVRGLALFPSTPFVIAG 71
>tr|A3CXG5|A3CXG5_METMJ Restriction endonuclease OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2142 PE=4 SV=1 Length = 547
Score = 33.5 bits (75), Expect = 5.4 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 10/94 (10%) Frame = -3
Query: 292 AVLEICEAYLQANHYASSPT--------YLLLCCGQGSLHC--HCARVCSLETHQPWPPS 143 AV E+C + H + P + +C G C H +++C E HQP Sbjct: 441 AVCEVCGKAYCSEHISQCPVCGRWVCSDHASVCSSCGKTFCKEHASKICR-ECHQPLCSD 499
Query: 142 PLVSLQCESC*ASYPPAHLMVCEQATPHYCSPGC 41 ++C C Y H ++C++ C P C Sbjct: 500 --CEVECPICHEPYGANHTLICDKCGAAVC-PSC 530
>tr|B2KTD3|B2KTD3_9CNID Nematocyst outer wall antigen OS=Clytia hemisphaerica PE=2 SV=1 Length = 509
Score = 30.0 bits (66), Expect(2) = 5.4 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -3
Query: 226 LLCCGQGSLHCHCARVCSLETHQPWPPSPLVSLQCESC*ASYPPAHLMVCEQATPHYCSP 47 ++C G + C + S + Q PP L + Q + A P M CE + P C+P Sbjct: 228 MMCPGDCASSCFPSCSSSCCSQQQSPPKALTNKQGKKLPAPKP----MTCEGSCPDSCAP 283
Query: 46 GC 41 C Sbjct: 284 SC 285
Score = 22.3 bits (46), Expect(2) = 5.4 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -1
Query: 267 ICRQTTMLLPQPICCCAVG 211 I Q +L PQP+ CA G Sbjct: 184 ILHQAAVLSPQPVQQCAAG 202
>tr|Q4FV32|Q4FV32_PSYA2 RNAse E OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=Psyc_0256 PE=4 SV=1 Length = 1405
Score = 33.1 bits (74), Expect = 7.0 Identities = 18/65 (27%), Positives = 30/65 (46%) Frame = +1
Query: 124 TAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAANRLGKKHSGLPANTPRRSLKQQPSS 303 TA + + A P+S ++ +GNE+N + +A +S R+ K +PS Sbjct: 666 TALVNTDNSQNASAPPQSTNQQSGNEQNRQQTRSAENSTDDNSDAEERRRRKPRKSRPSK 725
Query: 304 PRLAK 318 PR K Sbjct: 726 PRQRK 730
>tr|A4A9C5|A4A9C5_9GAMM Cell division protein FtsX OS=Congregibacter litoralis KT71 GN=KT71_05140 PE=4 SV=1 Length = 329
Score = 33.1 bits (74), Expect = 7.0 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = -1
Query: 345 RPQNLSWVALRQPWTGWLLF*RSARRICRQTTMLLPQPICCCAVGKVLFIAIVLVSALW 169 RP+ + W + W GW ++ +L QP+ C V+ IAI L S LW Sbjct: 18 RPRRIRWA---ERWRGWRR--HHSQSAAESLAKVLQQPLSSCMTWLVIGIAIALPSGLW 71
>tr|B8BNK0|B8BNK0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37763 PE=4 SV=1 Length = 507
Score = 32.7 bits (73), Expect = 9.1 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = +1
Query: 121 RTAETLKEKAAMVGASPKSRHEHNGNEENLAHSTAANRLGKK-HSGLPANTPRRSLKQQP 297 R AE + E AM SP+ RH N E + S+A+N + + L N R ++K QP Sbjct: 233 RLAEKMAEFKAMKHTSPEQRHSLNKPTEEHSCSSASNNIQPRIVEALQLNQKRPAMKIQP 292
Query: 298 SSPRLAKGNPGKVLR 342 R + N K R Sbjct: 293 RIARELQLNLNKHAR 307
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