BP918444
Clone id YMU001_000113_E11
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGTGTTCGTAAGAGCACCACATTTAATGATATATCAACCAAGCATCACCAATCATAGAAA
TTTGGCATACATCTTGGACAAAGCATTGATGACCATCACATTAGGCATACATATCAACCA
TCGTAGTGCTGAGTACAACTATAACAACATACCTTGCTATCAATGCACTACATGAGATGA
CATTATGGACAAGATGCTCCTCAAGAACTCACTGATCTATTAAGTGCACTATATTCCAGA
ACCTGGTCGAAGCCCAAAAACTCCCAGATGGCATACTCATTGAGGTGACCAAACTGGTAC
GGAATTGGTCCTTGGTGATACTTTGATGGGCAATATCTTGGCAAATTAGAACTGTGATTG
CCAATCTGAAAGGACCAACATGCTCCATTTGATGAGCACTTTAGGCCCATGCACTGACCT
CAGTCCTAACCCGTCATGTGCAACTTCCCAATCTGGTACATATATGCAAACCTTCCCAAC
TTCAAACTGCCATAACTTCCTCACCATAGCTCCAATTGATGAGCCGTAAAGACATGCCTT
TAGAGAACTTCGAGCATTGCAATTCCTGCG
■■Homology search results ■■ -
sp_hit_id Q6M1B4
Definition sp|Q6M1B4|Y002_METMP UPF0425 pyridoxal phosphate-dependent protein MMP0002 OS=Methanococcus maripaludis
Align length 52
Score (bit) 30.4
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918444|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_E11.
(570 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6M1B4|Y002_METMP UPF0425 pyridoxal phosphate-dependent prote... 30 6.4

>sp|Q6M1B4|Y002_METMP UPF0425 pyridoxal phosphate-dependent protein
MMP0002 OS=Methanococcus maripaludis GN=MMP0002 PE=3
SV=1
Length = 354

Score = 30.4 bits (67), Expect = 6.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2

Query: 113 INHRSAEYNYNNIPCYQCTT*DDIMDKMLLKNSLIY*VHYIPEPGRSPKTPR 268
++H S +N C+ T+ + M L S VHY+PE P PR
Sbjct: 67 LSHLSGNSKIHNAVCFNRTSSAILSTIMTLSKSFEKLVHYVPEKPAHPSIPR 118


tr_hit_id Q5GMI3
Definition tr|Q5GMI3|Q5GMI3_CAEEL Putative uncharacterized protein OS=Caenorhabditis elegans
Align length 119
Score (bit) 35.8
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918444|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_E11.
(570 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5GMI3|Q5GMI3_CAEEL Putative uncharacterized protein OS=Caeno... 36 1.7
tr|A6VHZ0|A6VHZ0_METM7 L-seryl-tRNA selenium transferase OS=Meth... 34 6.5
tr|Q29QK1|Q29QK1_DROME IP05464p (Fragment) OS=Drosophila melanog... 33 8.6

>tr|Q5GMI3|Q5GMI3_CAEEL Putative uncharacterized protein
OS=Caenorhabditis elegans GN=Y17G7B.23 PE=4 SV=1
Length = 308

Score = 35.8 bits (81), Expect = 1.7
Identities = 31/119 (26%), Positives = 53/119 (44%)
Frame = +2

Query: 104 GIHINHRSAEYNYNNIPCYQCTT*DDIMDKMLLKNSLIY*VHYIPEPGRSPKTPRWHTH* 283
G H + E+ +N C+Q DD+ ++K+ + + P+ +P++P + H
Sbjct: 77 GCHADFVWDEFASHNESCHQYV--DDVT---VIKSGIAF---CTPQVRANPQSPSCNAHF 128

Query: 284 GDQTGTELVLGDTLMGNILAN*NCDCQSERTNMLHLMSTLGPCTDLSPNPSCATSQSGT 460
D T + L G L N ++RTN L M T C++ N C+ S +GT
Sbjct: 129 DDTNATA---SNCLPGIFLRNSFIPSMTKRTN-LDAMHTCKSCSEFDGNGDCSASTTGT 183


>tr|A6VHZ0|A6VHZ0_METM7 L-seryl-tRNA selenium transferase
OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
GN=MmarC7_0999 PE=4 SV=1
Length = 354

Score = 33.9 bits (76), Expect = 6.5
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2

Query: 113 INHRSAEYNYNNIPCYQCTT*DDIMDKMLLKNSLIY*VHYIPEPGRSPKTPR 268
+NH S +N+ C+ T+ + M L S VHY+PE P PR
Sbjct: 67 LNHLSGNSEIHNVVCFNRTSSAILSTIMALSKSFKKLVHYVPEKPAHPSIPR 118


>tr|Q29QK1|Q29QK1_DROME IP05464p (Fragment) OS=Drosophila
melanogaster PE=2 SV=1
Length = 122

Score = 33.5 bits (75), Expect = 8.6
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1

Query: 4 VRKSTTFNDISTKHHQS*KFGIHLGQSI--DDHHIRHTYQP 120
++KS TF +S HH++ FGIHLG ++ HH H + P
Sbjct: 13 IKKSKTFK-MSPPHHENRLFGIHLGLNLGGGGHHHHHHHPP 52