BP918431 |
Clone id |
YMU001_000113_D08 |
Library |
YMU01 |
Length |
339 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000113_D08. |
Accession |
BP918431 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1749Contig1 |
Sequence |
TTTTAGACCAACTCGGGGTAGTATCATTAGGAAAAGATATGCATATCCACCAAGGCGCGA GAGTGATGATGACTGTTGGTGGTAGTCATCCAGGAGACGTACATGTTGAGCTTGACATCT CAACAAAAACAGATTTAGGCATCCAAGATCCTGCATGATAACATGTAGGCAAGTAACACC CTCCTTCCACATGTCCCACTTTACACTTGAAGAGGACCAAAGGCGGGTACTGATGCTCAG GCACCATGGAGAGCTGCAACGATATCTGAGGGAGTTGAATTTGCCTCTTTGGAGACCAGA GGTGGCTACTGCTTGCAGCCTTTATGAGTAATTATATGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0C6B8 |
Definition |
sp|P0C6B8|SVEP1_RAT Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus |
Align length |
49 |
Score (bit) |
30.0 |
E-value |
3.8 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918431|Adiantum capillus-veneris mRNA, clone: YMU001_000113_D08. (339 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P0C6B8|SVEP1_RAT Sushi, von Willebrand factor type A, EGF and... 30 3.8 sp|P19070|CR2_MOUSE Complement receptor type 2 OS=Mus musculus G... 30 4.9 sp|A2AVA0|SVEP1_MOUSE Sushi, von Willebrand factor type A, EGF a... 29 6.4 sp|Q5T5M9|CCNJ_HUMAN Cyclin-J OS=Homo sapiens GN=CCNJ PE=2 SV=2 29 6.4 sp|Q0HZT1|LEUD_SHESR 3-isopropylmalate dehydratase small subunit... 29 8.4 sp|Q0HE68|LEUD_SHESM 3-isopropylmalate dehydratase small subunit... 29 8.4 sp|P02920|LACY_ECOLI Lactose permease OS=Escherichia coli (strai... 29 8.4 sp|P49295|HEM12_CUCSA Glutamyl-tRNA reductase 2, chloroplastic O... 29 8.4 sp|Q9Z7L5|CSD_CHLPN Probable cysteine desulfurase OS=Chlamydia p... 29 8.4
>sp|P0C6B8|SVEP1_RAT Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus GN=Svep1 PE=1 SV=1 Length = 3564
Score = 30.0 bits (66), Expect = 3.8 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCTSPG 89 +QY +V F C G++ G C G+W P + + C + G Sbjct: 3425 YQYGDMVTFSCYSGYMLEGSLRSVCLENGTWTPPPICRAVCRFPCQNGG 3473
>sp|P19070|CR2_MOUSE Complement receptor type 2 OS=Mus musculus GN=Cr2 PE=2 SV=1 Length = 1025
Score = 29.6 bits (65), Expect = 4.9 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = -3
Query: 220 LVLFKCKVGHVEGGCYLPTCYHAGSWMP-KSVFVEMSSSTCTSPG*LP 80 +V F C G + G +L C+ +W+P + +S C SP +P Sbjct: 801 IVHFVCNQGFIMNGSHLIRCHTNNTWLPGVPTCIRKASLGCQSPSTIP 848
>sp|A2AVA0|SVEP1_MOUSE Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Mus musculus GN=Svep1 PE=1 SV=1 Length = 3567
Score = 29.3 bits (64), Expect = 6.4 Identities = 12/49 (24%), Positives = 21/49 (42%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCTSPG 89 +QY ++ + C G++ G C G+W P V + C + G Sbjct: 3428 YQYGDMITYSCYSGYMLEGSLRSVCLENGTWTPSPVCRAVCRFPCQNGG 3476
>sp|Q5T5M9|CCNJ_HUMAN Cyclin-J OS=Homo sapiens GN=CCNJ PE=2 SV=2 Length = 372
Score = 29.3 bits (64), Expect = 6.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2
Query: 116 HLNKNRFRHPRSCMITCRQVTPSFHMSHFTLE 211 H ++RHP S +C+Q+ + H S +TL+ Sbjct: 284 HQTSLQYRHPTSEQPSCQQIVSTTHTSSYTLQ 315
>sp|Q0HZT1|LEUD_SHESR 3-isopropylmalate dehydratase small subunit OS=Shewanella sp. (strain MR-7) GN=leuD PE=3 SV=1 Length = 201
Score = 28.9 bits (63), Expect = 8.4 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Frame = +2
Query: 155 MITCRQVTPSFHMSHFTLEEDQRRVLM---------LRHHGELQRYLRELNLPLWR 295 + TC+ ++PS FTL E R L+ L H ++ Y E N+P WR Sbjct: 147 LTTCKVISPSGAEFSFTLAESARHKLLNGLDAIGLTLSHGTQIGEY--EANIPSWR 200
>sp|Q0HE68|LEUD_SHESM 3-isopropylmalate dehydratase small subunit OS=Shewanella sp. (strain MR-4) GN=leuD PE=3 SV=1 Length = 201
Score = 28.9 bits (63), Expect = 8.4 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Frame = +2
Query: 155 MITCRQVTPSFHMSHFTLEEDQRRVLM---------LRHHGELQRYLRELNLPLWR 295 + TC+ ++PS FTL E R L+ L H ++ Y E N+P WR Sbjct: 147 LTTCKVISPSGAEFSFTLAESARHKLLNGLDAIGLTLSHGTQIGEY--EANIPSWR 200
>sp|P02920|LACY_ECOLI Lactose permease OS=Escherichia coli (strain K12) GN=lacY PE=1 SV=1 Length = 417
Score = 28.9 bits (63), Expect = 8.4 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -3
Query: 229 YPPLVLFKCKVGHVEGGCYLPTCYHAGS 146 + PL+ + VG + GG YL C++AG+ Sbjct: 95 FGPLLQYNILVGSIVGGIYLGFCFNAGA 122
>sp|P49295|HEM12_CUCSA Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumis sativus GN=HEMA2 PE=2 SV=1 Length = 542
Score = 28.9 bits (63), Expect = 8.4 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3
Query: 244 VPEHQYPPLVLFKCKVGHVEGGCYLPTC 161 +PE Q+PP + C + H+E L TC Sbjct: 116 IPEAQWPPGIGELCALNHIEEAAVLSTC 143
>sp|Q9Z7L5|CSD_CHLPN Probable cysteine desulfurase OS=Chlamydia pneumoniae GN=csd PE=3 SV=1 Length = 406
Score = 28.9 bits (63), Expect = 8.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3
Query: 15 GVVSLGKDMHIHQGARVMMTVGGSHPGDVHVELDI 119 GV LG + +GA + MT+ G+HP D+ LD+ Sbjct: 318 GVEILGPSIEEPRGALIGMTIDGAHPLDLGFLLDL 352
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6MF20 |
Definition |
tr|B6MF20|B6MF20_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae |
Align length |
49 |
Score (bit) |
38.5 |
E-value |
0.17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918431|Adiantum capillus-veneris mRNA, clone: YMU001_000113_D08. (339 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6MF20|B6MF20_BRAFL Putative uncharacterized protein OS=Branc... 39 0.17 tr|B6NNS3|B6NNS3_BRAFL Putative uncharacterized protein (Fragmen... 37 0.38 tr|B6NNS1|B6NNS1_BRAFL Putative uncharacterized protein (Fragmen... 37 0.38 tr|Q01TN4|Q01TN4_SOLUE Putative uncharacterized protein OS=Solib... 37 0.50 tr|B6MF18|B6MF18_BRAFL Putative uncharacterized protein OS=Branc... 35 1.4 tr|B6LIT0|B6LIT0_BRAFL Putative uncharacterized protein (Fragmen... 35 1.4 tr|B6MF10|B6MF10_BRAFL Putative uncharacterized protein (Fragmen... 34 4.2 tr|B6MY97|B6MY97_BRAFL Putative uncharacterized protein OS=Branc... 33 5.5 tr|B6L167|B6L167_BRAFL Putative uncharacterized protein (Fragmen... 33 5.5 tr|Q57U98|Q57U98_9TRYP Putative uncharacterized protein OS=Trypa... 33 7.1 tr|B6NNT0|B6NNT0_BRAFL Putative uncharacterized protein (Fragmen... 33 7.2 tr|B6L161|B6L161_BRAFL Putative uncharacterized protein (Fragmen... 33 7.2 tr|A7VLW0|A7VLW0_9VIRU Putative uncharacterized protein OS=Torqu... 33 9.3 tr|B6PD07|B6PD07_BRAFL Putative uncharacterized protein (Fragmen... 33 9.3 tr|B6N8L2|B6N8L2_BRAFL Putative uncharacterized protein OS=Branc... 33 9.3
>tr|B6MF20|B6MF20_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_81633 PE=4 SV=1 Length = 1263
Score = 38.5 bits (88), Expect = 0.17 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWM-PKSVFVEMSSSTCTSP 92 H YP V F C G+V G TC GSW P + +S T+P Sbjct: 670 HNYPATVTFTCNTGYVRNGAETTTCQADGSWSNPTPTCIPVSCPALTAP 718
>tr|B6NNS3|B6NNS3_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_233277 PE=4 SV=1 Length = 276
Score = 37.4 bits (85), Expect = 0.38 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW-MPKSVFVEMSSSTC 101 H YP V F C G+V G TC + GSW P + S C Sbjct: 225 HNYPVTVTFTCNTGYVRNGAVTTTCQNDGSWSKPVPTCTQTRKSIC 270
>tr|B6NNS1|B6NNS1_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_176545 PE=4 SV=1 Length = 255
Score = 37.4 bits (85), Expect = 0.38 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -3
Query: 241 PEHQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW 143 P H YP V F C G+V G TC GSW Sbjct: 216 PLHSYPVTVTFTCNAGYVRNGAQTTTCQTDGSW 248
>tr|Q01TN4|Q01TN4_SOLUE Putative uncharacterized protein OS=Solibacter usitatus (strain Ellin6076) GN=Acid_6051 PE=3 SV=1 Length = 564
Score = 37.0 bits (84), Expect = 0.50 Identities = 22/72 (30%), Positives = 33/72 (45%) Frame = -3
Query: 226 PPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCTSPG*LPPTVIITLAPWW 47 P L+L C + + G + Y GS +P + ++S+T +P I T WW Sbjct: 13 PLLILATCGLSFADYGDTVYFTYQIGSTIPSPQYSTITSTTTRQ---IPNLAIRTSGQWW 69
Query: 46 ICISFPNDTTPS 11 I S + TTPS Sbjct: 70 IQASLSSTTTPS 81
>tr|B6MF18|B6MF18_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_81631 PE=4 SV=1 Length = 992
Score = 35.4 bits (80), Expect = 1.4 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW 143 H YP V F C G+V G TC GSW Sbjct: 530 HNYPVTVTFTCNTGYVRNGAATTTCQTDGSW 560
Score = 33.9 bits (76), Expect = 4.2 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCT 98 H YP V F C G+V G TC G+W S TCT Sbjct: 589 HNYPVTVTFTCNTGYVRNGDQTTTCQADGTW-------SNHSPTCT 627
>tr|B6LIT0|B6LIT0_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_187059 PE=4 SV=1 Length = 261
Score = 35.4 bits (80), Expect = 1.4 Identities = 14/31 (45%), Positives = 14/31 (45%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW 143 H YP V F C GHV G C GSW Sbjct: 224 HNYPATVTFSCNAGHVVNGAETTKCQTDGSW 254
>tr|B6MF10|B6MF10_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_135646 PE=4 SV=1 Length = 606
Score = 33.9 bits (76), Expect = 4.2 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCT 98 H YP V F C G+V G TC G+W S TCT Sbjct: 382 HNYPVTVTFTCNTGYVRNGDQTTTCQADGTW-------SNHSPTCT 420
>tr|B6MY97|B6MY97_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_88271 PE=4 SV=1 Length = 1873
Score = 33.5 bits (75), Expect = 5.5 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -3
Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW 143 H YP V F C G+V G C GSW Sbjct: 339 HSYPATVTFTCNPGYVRNGAQTTVCQTDGSW 369
>tr|B6L167|B6L167_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_200877 PE=4 SV=1 Length = 472
Score = 33.5 bits (75), Expect = 5.5 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Frame = -3
Query: 241 PEHQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW---MPKSVFVEMSSSTCTSPG*LPPT- 74 P + YP V F C +G+V G TC G+W +P V ++T P P Sbjct: 182 PAYSYPSTVTFTCNLGYVRIGASSTTCQADGTWSNPVPICTVVFFFTNTVVCPMLTAPPN 241
Query: 73 -VIITLAPWWICISFPNDTT 17 + + P++ +PN T Sbjct: 242 GALSPIGPYF----YPNQVT 257
>tr|Q57U98|Q57U98_9TRYP Putative uncharacterized protein OS=Trypanosoma brucei GN=Tb927.5.3680 PE=4 SV=1 Length = 353
Score = 33.1 bits (74), Expect = 7.1 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1
Query: 204 VKWDMWKEGVTCLHVIMQDLGCLNLFLLRC 115 V W W T HV+M L C ++F+L C Sbjct: 197 VSWSKWTGSGTAEHVVMWQLSCFHIFILGC 226
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