BP918431
Clone id YMU001_000113_D08
Library
Length 339
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTAGACCAACTCGGGGTAGTATCATTAGGAAAAGATATGCATATCCACCAAGGCGCGA
GAGTGATGATGACTGTTGGTGGTAGTCATCCAGGAGACGTACATGTTGAGCTTGACATCT
CAACAAAAACAGATTTAGGCATCCAAGATCCTGCATGATAACATGTAGGCAAGTAACACC
CTCCTTCCACATGTCCCACTTTACACTTGAAGAGGACCAAAGGCGGGTACTGATGCTCAG
GCACCATGGAGAGCTGCAACGATATCTGAGGGAGTTGAATTTGCCTCTTTGGAGACCAGA
GGTGGCTACTGCTTGCAGCCTTTATGAGTAATTATATGA
■■Homology search results ■■ -
sp_hit_id P0C6B8
Definition sp|P0C6B8|SVEP1_RAT Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus
Align length 49
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918431|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_D08.
(339 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0C6B8|SVEP1_RAT Sushi, von Willebrand factor type A, EGF and... 30 3.8
sp|P19070|CR2_MOUSE Complement receptor type 2 OS=Mus musculus G... 30 4.9
sp|A2AVA0|SVEP1_MOUSE Sushi, von Willebrand factor type A, EGF a... 29 6.4
sp|Q5T5M9|CCNJ_HUMAN Cyclin-J OS=Homo sapiens GN=CCNJ PE=2 SV=2 29 6.4
sp|Q0HZT1|LEUD_SHESR 3-isopropylmalate dehydratase small subunit... 29 8.4
sp|Q0HE68|LEUD_SHESM 3-isopropylmalate dehydratase small subunit... 29 8.4
sp|P02920|LACY_ECOLI Lactose permease OS=Escherichia coli (strai... 29 8.4
sp|P49295|HEM12_CUCSA Glutamyl-tRNA reductase 2, chloroplastic O... 29 8.4
sp|Q9Z7L5|CSD_CHLPN Probable cysteine desulfurase OS=Chlamydia p... 29 8.4

>sp|P0C6B8|SVEP1_RAT Sushi, von Willebrand factor type A, EGF and
pentraxin domain-containing protein 1 OS=Rattus
norvegicus GN=Svep1 PE=1 SV=1
Length = 3564

Score = 30.0 bits (66), Expect = 3.8
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCTSPG 89
+QY +V F C G++ G C G+W P + + C + G
Sbjct: 3425 YQYGDMVTFSCYSGYMLEGSLRSVCLENGTWTPPPICRAVCRFPCQNGG 3473


>sp|P19070|CR2_MOUSE Complement receptor type 2 OS=Mus musculus
GN=Cr2 PE=2 SV=1
Length = 1025

Score = 29.6 bits (65), Expect = 4.9
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3

Query: 220 LVLFKCKVGHVEGGCYLPTCYHAGSWMP-KSVFVEMSSSTCTSPG*LP 80
+V F C G + G +L C+ +W+P + +S C SP +P
Sbjct: 801 IVHFVCNQGFIMNGSHLIRCHTNNTWLPGVPTCIRKASLGCQSPSTIP 848


>sp|A2AVA0|SVEP1_MOUSE Sushi, von Willebrand factor type A, EGF and
pentraxin domain-containing protein 1 OS=Mus musculus
GN=Svep1 PE=1 SV=1
Length = 3567

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCTSPG 89
+QY ++ + C G++ G C G+W P V + C + G
Sbjct: 3428 YQYGDMITYSCYSGYMLEGSLRSVCLENGTWTPSPVCRAVCRFPCQNGG 3476


>sp|Q5T5M9|CCNJ_HUMAN Cyclin-J OS=Homo sapiens GN=CCNJ PE=2 SV=2
Length = 372

Score = 29.3 bits (64), Expect = 6.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2

Query: 116 HLNKNRFRHPRSCMITCRQVTPSFHMSHFTLE 211
H ++RHP S +C+Q+ + H S +TL+
Sbjct: 284 HQTSLQYRHPTSEQPSCQQIVSTTHTSSYTLQ 315


>sp|Q0HZT1|LEUD_SHESR 3-isopropylmalate dehydratase small subunit
OS=Shewanella sp. (strain MR-7) GN=leuD PE=3 SV=1
Length = 201

Score = 28.9 bits (63), Expect = 8.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Frame = +2

Query: 155 MITCRQVTPSFHMSHFTLEEDQRRVLM---------LRHHGELQRYLRELNLPLWR 295
+ TC+ ++PS FTL E R L+ L H ++ Y E N+P WR
Sbjct: 147 LTTCKVISPSGAEFSFTLAESARHKLLNGLDAIGLTLSHGTQIGEY--EANIPSWR 200


>sp|Q0HE68|LEUD_SHESM 3-isopropylmalate dehydratase small subunit
OS=Shewanella sp. (strain MR-4) GN=leuD PE=3 SV=1
Length = 201

Score = 28.9 bits (63), Expect = 8.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Frame = +2

Query: 155 MITCRQVTPSFHMSHFTLEEDQRRVLM---------LRHHGELQRYLRELNLPLWR 295
+ TC+ ++PS FTL E R L+ L H ++ Y E N+P WR
Sbjct: 147 LTTCKVISPSGAEFSFTLAESARHKLLNGLDAIGLTLSHGTQIGEY--EANIPSWR 200


>sp|P02920|LACY_ECOLI Lactose permease OS=Escherichia coli (strain
K12) GN=lacY PE=1 SV=1
Length = 417

Score = 28.9 bits (63), Expect = 8.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3

Query: 229 YPPLVLFKCKVGHVEGGCYLPTCYHAGS 146
+ PL+ + VG + GG YL C++AG+
Sbjct: 95 FGPLLQYNILVGSIVGGIYLGFCFNAGA 122


>sp|P49295|HEM12_CUCSA Glutamyl-tRNA reductase 2, chloroplastic
OS=Cucumis sativus GN=HEMA2 PE=2 SV=1
Length = 542

Score = 28.9 bits (63), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3

Query: 244 VPEHQYPPLVLFKCKVGHVEGGCYLPTC 161
+PE Q+PP + C + H+E L TC
Sbjct: 116 IPEAQWPPGIGELCALNHIEEAAVLSTC 143


>sp|Q9Z7L5|CSD_CHLPN Probable cysteine desulfurase OS=Chlamydia
pneumoniae GN=csd PE=3 SV=1
Length = 406

Score = 28.9 bits (63), Expect = 8.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3

Query: 15 GVVSLGKDMHIHQGARVMMTVGGSHPGDVHVELDI 119
GV LG + +GA + MT+ G+HP D+ LD+
Sbjct: 318 GVEILGPSIEEPRGALIGMTIDGAHPLDLGFLLDL 352


tr_hit_id B6MF20
Definition tr|B6MF20|B6MF20_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 49
Score (bit) 38.5
E-value 0.17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918431|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_D08.
(339 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6MF20|B6MF20_BRAFL Putative uncharacterized protein OS=Branc... 39 0.17
tr|B6NNS3|B6NNS3_BRAFL Putative uncharacterized protein (Fragmen... 37 0.38
tr|B6NNS1|B6NNS1_BRAFL Putative uncharacterized protein (Fragmen... 37 0.38
tr|Q01TN4|Q01TN4_SOLUE Putative uncharacterized protein OS=Solib... 37 0.50
tr|B6MF18|B6MF18_BRAFL Putative uncharacterized protein OS=Branc... 35 1.4
tr|B6LIT0|B6LIT0_BRAFL Putative uncharacterized protein (Fragmen... 35 1.4
tr|B6MF10|B6MF10_BRAFL Putative uncharacterized protein (Fragmen... 34 4.2
tr|B6MY97|B6MY97_BRAFL Putative uncharacterized protein OS=Branc... 33 5.5
tr|B6L167|B6L167_BRAFL Putative uncharacterized protein (Fragmen... 33 5.5
tr|Q57U98|Q57U98_9TRYP Putative uncharacterized protein OS=Trypa... 33 7.1
tr|B6NNT0|B6NNT0_BRAFL Putative uncharacterized protein (Fragmen... 33 7.2
tr|B6L161|B6L161_BRAFL Putative uncharacterized protein (Fragmen... 33 7.2
tr|A7VLW0|A7VLW0_9VIRU Putative uncharacterized protein OS=Torqu... 33 9.3
tr|B6PD07|B6PD07_BRAFL Putative uncharacterized protein (Fragmen... 33 9.3
tr|B6N8L2|B6N8L2_BRAFL Putative uncharacterized protein OS=Branc... 33 9.3

>tr|B6MF20|B6MF20_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_81633 PE=4 SV=1
Length = 1263

Score = 38.5 bits (88), Expect = 0.17
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWM-PKSVFVEMSSSTCTSP 92
H YP V F C G+V G TC GSW P + +S T+P
Sbjct: 670 HNYPATVTFTCNTGYVRNGAETTTCQADGSWSNPTPTCIPVSCPALTAP 718


>tr|B6NNS3|B6NNS3_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_233277 PE=4 SV=1
Length = 276

Score = 37.4 bits (85), Expect = 0.38
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW-MPKSVFVEMSSSTC 101
H YP V F C G+V G TC + GSW P + S C
Sbjct: 225 HNYPVTVTFTCNTGYVRNGAVTTTCQNDGSWSKPVPTCTQTRKSIC 270


>tr|B6NNS1|B6NNS1_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_176545 PE=4 SV=1
Length = 255

Score = 37.4 bits (85), Expect = 0.38
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3

Query: 241 PEHQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW 143
P H YP V F C G+V G TC GSW
Sbjct: 216 PLHSYPVTVTFTCNAGYVRNGAQTTTCQTDGSW 248


>tr|Q01TN4|Q01TN4_SOLUE Putative uncharacterized protein
OS=Solibacter usitatus (strain Ellin6076) GN=Acid_6051
PE=3 SV=1
Length = 564

Score = 37.0 bits (84), Expect = 0.50
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -3

Query: 226 PPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCTSPG*LPPTVIITLAPWW 47
P L+L C + + G + Y GS +P + ++S+T +P I T WW
Sbjct: 13 PLLILATCGLSFADYGDTVYFTYQIGSTIPSPQYSTITSTTTRQ---IPNLAIRTSGQWW 69

Query: 46 ICISFPNDTTPS 11
I S + TTPS
Sbjct: 70 IQASLSSTTTPS 81


>tr|B6MF18|B6MF18_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_81631 PE=4 SV=1
Length = 992

Score = 35.4 bits (80), Expect = 1.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW 143
H YP V F C G+V G TC GSW
Sbjct: 530 HNYPVTVTFTCNTGYVRNGAATTTCQTDGSW 560



Score = 33.9 bits (76), Expect = 4.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCT 98
H YP V F C G+V G TC G+W S TCT
Sbjct: 589 HNYPVTVTFTCNTGYVRNGDQTTTCQADGTW-------SNHSPTCT 627


>tr|B6LIT0|B6LIT0_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_187059 PE=4 SV=1
Length = 261

Score = 35.4 bits (80), Expect = 1.4
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW 143
H YP V F C GHV G C GSW
Sbjct: 224 HNYPATVTFSCNAGHVVNGAETTKCQTDGSW 254


>tr|B6MF10|B6MF10_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_135646 PE=4 SV=1
Length = 606

Score = 33.9 bits (76), Expect = 4.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSWMPKSVFVEMSSSTCT 98
H YP V F C G+V G TC G+W S TCT
Sbjct: 382 HNYPVTVTFTCNTGYVRNGDQTTTCQADGTW-------SNHSPTCT 420


>tr|B6MY97|B6MY97_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_88271 PE=4 SV=1
Length = 1873

Score = 33.5 bits (75), Expect = 5.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3

Query: 235 HQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW 143
H YP V F C G+V G C GSW
Sbjct: 339 HSYPATVTFTCNPGYVRNGAQTTVCQTDGSW 369


>tr|B6L167|B6L167_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_200877 PE=4 SV=1
Length = 472

Score = 33.5 bits (75), Expect = 5.5
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = -3

Query: 241 PEHQYPPLVLFKCKVGHVEGGCYLPTCYHAGSW---MPKSVFVEMSSSTCTSPG*LPPT- 74
P + YP V F C +G+V G TC G+W +P V ++T P P
Sbjct: 182 PAYSYPSTVTFTCNLGYVRIGASSTTCQADGTWSNPVPICTVVFFFTNTVVCPMLTAPPN 241

Query: 73 -VIITLAPWWICISFPNDTT 17
+ + P++ +PN T
Sbjct: 242 GALSPIGPYF----YPNQVT 257


>tr|Q57U98|Q57U98_9TRYP Putative uncharacterized protein
OS=Trypanosoma brucei GN=Tb927.5.3680 PE=4 SV=1
Length = 353

Score = 33.1 bits (74), Expect = 7.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1

Query: 204 VKWDMWKEGVTCLHVIMQDLGCLNLFLLRC 115
V W W T HV+M L C ++F+L C
Sbjct: 197 VSWSKWTGSGTAEHVVMWQLSCFHIFILGC 226