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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918421
Clone id YMU001_000113_C09
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000113_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAGAGAAAAGAATTGAAAATATAACATCAGTTTCCATTAACAAACTTAAACCAGCAAAA
CAACCTTGATCATAGTTCTCTGCAGCGCAACTACTACTTGTCGTAAGCTACAAATTTTCC
AACAGTCTAACTACTTCTTCTCTAAAGGTACAAAGGGCATATTTTCCTTCCCGACATACA
CATTAACTACGCAATTTGACATGTTGCAAACTGGAGACACTGACACGGGAGGATTTCGAC
CACCAATACCTAGAGCTCTAGCCGACTCAGGCGGAAGCTCATACAGAAGGCTCTCATCAA
AAGGAATGTCTTCCCCTATTCTGTAGGGAACAAAAGGCACACTTGGCTTCAAATGACCAC
CACCTGAACCAGCAATACCAATTGAACATCCTTTACCAGCAACACCAACTTCCTTACTGC
CACCTGAACCAACAATACCAGTTGAACATCCTTTACCAGTTGAACCAATATTACCAGCTG
AAGCACAAGAACCACAACCAGAACTACCAACATCAACTGACATATCAACACTAGAAGCGG
T
■■Homology search results ■■ -
sp_hit_id Q8R2K4
Definition sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus
Align length 35
Score (bit) 34.3
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918421|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_C09.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-assoc...    34   0.38 
sp|P42770|GSHRP_ARATH Glutathione reductase, chloroplastic OS=Ar...    31   3.2  
sp|Q5QQ50|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris G...    31   4.1  
sp|Q5QQ49|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT...    30   7.1  
sp|Q6C7C0|MYO1_YARLI Myosin-1 OS=Yarrowia lipolytica GN=MYO1 PE=...    30   9.2  

>sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1
          Length = 616

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 312 YRIGEDIPFDESLLYELPPESARALGIGGRNPPVS 208
           YR  ED+P+D  LL E PP  +   G G   PP S
Sbjct: 389 YRPAEDLPWDSLLLQESPPGGSSETGFGSGLPPPS 423


>sp|P42770|GSHRP_ARATH Glutathione reductase, chloroplastic
           OS=Arabidopsis thaliana GN=EMB2360 PE=2 SV=1
          Length = 565

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = -1

Query: 324 PFVPYRIGEDIPFDESLLYELPPESARALGIGGRNPPVSVSPVCNMSNCVVNVYVGKENM 145
           PF+P   G++   D     +LP +  +   +GG    +  + + N  NC V+V++ ++ +
Sbjct: 236 PFIPDIPGKEFAIDSDAALDLPSKPKKIAIVGGGYIALEFAGIFNGLNCEVHVFIRQKKV 295


>sp|Q5QQ50|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris
           GN=XYLT2 PE=2 SV=1
          Length = 865

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 158 PTYTLTTQFDMLQTGDTDTGGFRPPIPRAL 247
           PTY + T +D+    DT+   ++PP+ R L
Sbjct: 693 PTYVVATSYDIAVDADTEVTQYKPPLSRPL 722


>sp|Q5QQ49|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT2
           PE=2 SV=1
          Length = 867

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 158 PTYTLTTQFDMLQTGDTDTGGFRPPIPRAL 247
           PTY + T +D++   +T+   ++PP+ R L
Sbjct: 695 PTYVVATSYDIVVDAETEVTQYKPPLSRPL 724


>sp|Q6C7C0|MYO1_YARLI Myosin-1 OS=Yarrowia lipolytica GN=MYO1 PE=3
            SV=1
          Length = 1228

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 95   LQIFQQSNYFFSKGTKGIFSFP-TYTLTTQFDMLQTGDTDTGGFRPP 232
            ++I  Q +YF  +G K    F  T TL T+FDM ++G        PP
Sbjct: 918  IRIGPQIDYFKKQGKKASVKFQKTTTLQTKFDMYKSGSVQVPPGAPP 964
tr_hit_id Q02QP5
Definition tr|Q02QP5|Q02QP5_PSEAB Heme acquisition protein HasAp OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
Align length 66
Score (bit) 35.4
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918421|Adiantum capillus-veneris mRNA, clone:
YMU001_000113_C09.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q02QP5|Q02QP5_PSEAB Heme acquisition protein HasAp OS=Pseudom...    35   1.8  
tr|O69756|O69756_PSEAE Heme acquisition protein HasAp OS=Pseudom...    35   1.8  
tr|B7V115|B7V115_PSEAE Heme acquisition protein HasAp OS=Pseudom...    35   1.8  
tr|A3LDK2|A3LDK2_PSEAE Heme acquisition protein HasAp OS=Pseudom...    35   1.8  
tr|A3KX77|A3KX77_PSEAE Heme acquisition protein HasAp OS=Pseudom...    35   1.8  
tr|A7T2G6|A7T2G6_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   2.3  
tr|A2EC56|A2EC56_TRIVA Putative uncharacterized protein OS=Trich...    35   2.3  
tr|A6V220|A6V220_PSEA7 Heme acquisition protein HasAp OS=Pseudom...    34   5.2  
tr|B6L3A3|B6L3A3_BRAFL Putative uncharacterized protein (Fragmen...    34   5.2  
tr|A3Y5J9|A3Y5J9_9GAMM Putative uncharacterized protein OS=Marin...    33   6.9  
tr|Q1EDB4|Q1EDB4_9CYAN HctB OS=Lyngbya majuscula PE=4 SV=1             33   9.0  

>tr|Q02QP5|Q02QP5_PSEAB Heme acquisition protein HasAp
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hasAp
           PE=4 SV=1
          Length = 205

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313
           +FS P++TL  + D +  GDT TGG         A SGG    S     S+ G+ SPI  
Sbjct: 77  LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127

Query: 314 GTKGTL 331
           G  GT+
Sbjct: 128 GRDGTV 133


>tr|O69756|O69756_PSEAE Heme acquisition protein HasAp
           OS=Pseudomonas aeruginosa GN=hasAp PE=4 SV=1
          Length = 205

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313
           +FS P++TL  + D +  GDT TGG         A SGG    S     S+ G+ SPI  
Sbjct: 77  LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127

Query: 314 GTKGTL 331
           G  GT+
Sbjct: 128 GRDGTV 133


>tr|B7V115|B7V115_PSEAE Heme acquisition protein HasAp
           OS=Pseudomonas aeruginosa LESB58 GN=hasAp PE=4 SV=1
          Length = 205

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313
           +FS P++TL  + D +  GDT TGG         A SGG    S     S+ G+ SPI  
Sbjct: 77  LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127

Query: 314 GTKGTL 331
           G  GT+
Sbjct: 128 GRDGTV 133


>tr|A3LDK2|A3LDK2_PSEAE Heme acquisition protein HasAp
           OS=Pseudomonas aeruginosa 2192 GN=PA2G_02821 PE=4 SV=1
          Length = 205

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313
           +FS P++TL  + D +  GDT TGG         A SGG    S     S+ G+ SPI  
Sbjct: 77  LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127

Query: 314 GTKGTL 331
           G  GT+
Sbjct: 128 GRDGTV 133


>tr|A3KX77|A3KX77_PSEAE Heme acquisition protein HasAp
           OS=Pseudomonas aeruginosa C3719 GN=PACG_02341 PE=4 SV=1
          Length = 205

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313
           +FS P++TL  + D +  GDT TGG         A SGG    S     S+ G+ SPI  
Sbjct: 77  LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFSNLGLDSPIAQ 127

Query: 314 GTKGTL 331
           G  GT+
Sbjct: 128 GRDGTV 133


>tr|A7T2G6|A7T2G6_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g143109 PE=4 SV=1
          Length = 388

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
 Frame = -3

Query: 448 NW*RMFNWYCWFR---WQ*GSWCCW*RMFNWYCWFR-------WWS 341
           NW   + W  W R   W    W CW R   W CW R       WW+
Sbjct: 85  NWWACWRWNSWTRSTWWACWRWNCWTRGTWWACWRRNSWTRSTWWA 130


>tr|A2EC56|A2EC56_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_413820 PE=4 SV=1
          Length = 360

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +3

Query: 195 KLETLTREDFDHQYLEL*PTQAEAHTEGSHQKECLPLFCREQKAHLA 335
           K+    +++ D+ Y EL   ++E  TE S   + LP F REQKAH A
Sbjct: 288 KIRNSFQQEIDNYYKELRSVKSELDTERSAIIQSLPSFRREQKAHQA 334


>tr|A6V220|A6V220_PSEA7 Heme acquisition protein HasAp
           OS=Pseudomonas aeruginosa (strain PA7) GN=hasAp PE=4
           SV=1
          Length = 205

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 146 IFSFPTYTLTTQFDMLQTGDTDTGGFRPPIPRALADSGG----SSYRRLSSKGMSSPIL* 313
           +FS P++TL  + D +  GDT TGG         A SGG    S      + G+ SPI  
Sbjct: 77  LFSNPSHTLWGKLDSIALGDTLTGG---------ASSGGYALDSQEVSFGNLGLDSPIAQ 127

Query: 314 GTKGTL 331
           G  GT+
Sbjct: 128 GRDGTV 133


>tr|B6L3A3|B6L3A3_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_142103 PE=4 SV=1
          Length = 144

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 448 NW*RMFNWYCWFRWQ*G-SWCCW*RMFNWYCWFRWWSFEAKCAFCSL 311
           +W R+  W  W R   G SW  W R+  W  WFR       C++C L
Sbjct: 70  SWCRLVCWCSWCRLVCGCSWFSWCRLVCWRSWFR---LVCGCSWCRL 113


>tr|A3Y5J9|A3Y5J9_9GAMM Putative uncharacterized protein
           OS=Marinomonas sp. MED121 GN=MED121_16604 PE=4 SV=1
          Length = 277

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -1

Query: 303 GEDIPFDESLLYELPPESARALGIGGRNPPVSVSPVCNMSNCVVNVYVGKENMPFVPLEK 124
           G DIP  ES       E  RAL      P  +VS  CN+   +  VY+  E +P +P ++
Sbjct: 136 GRDIPTIES-------EFNRALNNVSSEPREAVSAACNILESIFKVYISDEGLP-MPSKQ 187

Query: 123 K*LDCWKI 100
                WK+
Sbjct: 188 DLKGVWKV 195