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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918354
Clone id YMU001_000112_E06
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCACAGGTTGAATGCCCGCATGAAGAGAAAGCAAGTTTCAATGCTAGAAAGTTTCAGTCT
CTTGTCAGAACATGTAAAAGAGCTTTGTAAGGCTTTGAATATTGTTGCTTCCTTTCAGAA
AGGGAATGCTTTAACAGCGGGGTACGATTTCGATCGCACTTTATTGTTGTGTGCCGGAAA
CTTTGCCAGCACCCCAGAGTGGGCAAGTGCTTTAACCAATATAAGGACTTGGATGTACGG
TATGTACCTCGCATTGAATGCTGAGCAATGCTCGTGCGATTTTATCAATTATGCCAAGCT
CATAAGTGAGATCAAGAGGAGTGCTTGTGATAAAACTATTTTTGAAGATCCATCAAAGTT
TTTGGCGTCTGTCTGTTCGCAACACGAAATGATGGAGCGTCTTCTATCTCAGGTAGAAGA
AAACAGCAATTGCTGTGCAAAACTCTCTGAGGGGCAGGAACTTGCCTTAAGCGCTCTAGT
GGATGCCTCTCTGCATCAATC
■■Homology search results ■■ -
sp_hit_id Q5XIP4
Definition sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus
Align length 50
Score (bit) 33.9
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918354|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_E06.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus ...    34   0.43 
sp|Q06703|CDA2_YEAST Chitin deacetylase 2 OS=Saccharomyces cerev...    33   0.74 
sp|O14905|WNT9B_HUMAN Protein Wnt-9b OS=Homo sapiens GN=WNT9B PE...    32   1.6  
sp|P53917|FAR11_YEAST Factor arrest protein 11 OS=Saccharomyces ...    30   4.8  
sp|Q8CR71|PPK_STAES Polyphosphate kinase OS=Staphylococcus epide...    30   8.2  
sp|Q5HLE0|PPK_STAEQ Polyphosphate kinase OS=Staphylococcus epide...    30   8.2  

>sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus
           GN=Ubqlnl PE=2 SV=1
          Length = 612

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 349 IFKNSFITSTPLDLTYELGIIDKIARALLSIQCEVHTVHPSPYIG*STCP 200
           +  NS I    L+L   L II +I +     Q   HT++P PY+G  T P
Sbjct: 214 LLDNSEILCQTLELARHLAIIQEIMQIQQPAQNPEHTLNPQPYLGLETIP 263


>sp|Q06703|CDA2_YEAST Chitin deacetylase 2 OS=Saccharomyces
           cerevisiae GN=CDA2 PE=1 SV=1
          Length = 312

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
 Frame = +2

Query: 146 DFDRTLLLCAGNFASTPEWASALTNIRTWMYGMYLALNAEQCSCDFINYAKL--ISEIKR 319
           DF   +L  A      P+W SA T ++ W       L+      DFI+++++    E  +
Sbjct: 36  DFQFPVLERAATKTPFPDWLSAFTGLKEWP-----GLDPPYIPLDFIDFSQIPDYKEYDQ 90

Query: 320 SACDKTIFEDPSKFLASVCSQHEMMERLLSQVEENSNCCAKLS----EGQELALSALVDA 487
           + CD ++  D   F    C++H           ++   C+KLS    +G   + + L+D 
Sbjct: 91  NHCD-SVPRDSCSFDCHHCTEH-----------DDVYTCSKLSQTFDDGPSASTTKLLDR 138

Query: 488 SLH 496
             H
Sbjct: 139 LKH 141


>sp|O14905|WNT9B_HUMAN Protein Wnt-9b OS=Homo sapiens GN=WNT9B PE=2
           SV=2
          Length = 357

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -2

Query: 209 HLPTLGCWQSFRHTTIKCD-RNRTPLLKHSLSERKQQYSKPYKALLHVLTR 60
           HL  L C   FRH    C    RT LLK    E    Y+    AL H L R
Sbjct: 83  HLGLLECQFQFRHERWNCSLEGRTGLLKRGFKETAFLYAVSSAALTHTLAR 133


>sp|P53917|FAR11_YEAST Factor arrest protein 11 OS=Saccharomyces
           cerevisiae GN=FAR11 PE=1 SV=1
          Length = 953

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 146 DFDRTLLLCAGNFASTPEWASALTNIRTWMYGMYLALNAEQ----CSCDFINYAKLISEI 313
           +F ++L  CA +         AL     W   M+ +L  E     CS D++++ +  +  
Sbjct: 194 EFQKSLDQCAASLEERSSAPYALQRAVDWELKMFYSLEDELSEWFCSSDYMHFGQTQTLF 253

Query: 314 KRSACDKTIFEDPSKFLASV 373
           K+      +F D   + ASV
Sbjct: 254 KQKITQPQLFFDDENYAASV 273


>sp|Q8CR71|PPK_STAES Polyphosphate kinase OS=Staphylococcus
           epidermidis (strain ATCC 12228) GN=ppk PE=3 SV=1
          Length = 734

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = -3

Query: 379 RTDRRQKL*WIFKNSFITST-------PLDLTYELGIIDKIARALLSIQCEVHTVHPSPY 221
           RT  ++ + W+     I          PLDLT+  G++D ++  L  +  E +T  P   
Sbjct: 284 RTSEKENVEWLINQLEIEDNDIYYLDGPLDLTFLFGLVDHLSHKLKYLTYEKYTPQPPRS 343

Query: 220 IG 215
           +G
Sbjct: 344 LG 345


>sp|Q5HLE0|PPK_STAEQ Polyphosphate kinase OS=Staphylococcus
           epidermidis (strain ATCC 35984 / RP62A) GN=ppk PE=3 SV=1
          Length = 721

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = -3

Query: 379 RTDRRQKL*WIFKNSFITST-------PLDLTYELGIIDKIARALLSIQCEVHTVHPSPY 221
           RT  ++ + W+     I          PLDLT+  G++D ++  L  +  E +T  P   
Sbjct: 271 RTSEKENVEWLINQLEIEDNDIYYLDGPLDLTFLFGLVDHLSHKLKYLTYEKYTPQPPRS 330

Query: 220 IG 215
           +G
Sbjct: 331 LG 332
tr_hit_id A5IDS8
Definition tr|A5IDS8|A5IDS8_LEGPC Calmodulin-dependent protein kinase OS=Legionella pneumophila (strain Corby)
Align length 134
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918354|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_E06.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5IDS8|A5IDS8_LEGPC Calmodulin-dependent protein kinase OS=Le...    35   1.5  
tr|Q4S0P1|Q4S0P1_TETNG Chromosome 2 SCAF14781, whole genome shot...    34   3.3  
tr|Q5X3G0|Q5X3G0_LEGPA Putative uncharacterized protein OS=Legio...    33   5.7  
tr|Q5F720|Q5F720_NEIG1 Putative exodeoxyribonuclease V OS=Neisse...    33   7.4  
tr|B4RN93|B4RN93_NEIG2 Putative exodeoxyribonuclease V OS=Neisse...    33   7.4  
tr|B5JNT0|B5JNT0_9BACT SNF2 family N-terminal domain protein OS=...    33   7.4  
tr|B5VNK8|B5VNK8_YEAS6 YLR308Wp-like protein OS=Saccharomyces ce...    33   7.4  
tr|B3RHI7|B3RHI7_YEAS1 Chitin deacetylase OS=Saccharomyces cerev...    33   7.4  
tr|A7A1J3|A7A1J3_YEAS7 Chitin deacetylase OS=Saccharomyces cerev...    33   7.4  
tr|Q4SA66|Q4SA66_TETNG Chromosome 12 SCAF14692, whole genome sho...    33   7.6  
tr|Q1DXD4|Q1DXD4_COCIM Predicted protein OS=Coccidioides immitis...    33   7.6  
tr|A9M1U0|A9M1U0_NEIM0 Exodeoxyribonuclease V gamma subunit OS=N...    33   9.7  
tr|A1KVC5|A1KVC5_NEIMF Exodeoxyribonuclease V OS=Neisseria menin...    33   9.7  
tr|A1ITH1|A1ITH1_NEIMA Exodeoxyribonuclease V OS=Neisseria menin...    33   9.7  

>tr|A5IDS8|A5IDS8_LEGPC Calmodulin-dependent protein kinase
           OS=Legionella pneumophila (strain Corby) GN=LPC_1586
           PE=4 SV=1
          Length = 542

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
 Frame = +2

Query: 26  RKQVSMLESFSL--LSEHVKELCKALNIVASFQKGNALTAGYDF---DRTLLLCAGNFAS 190
           ++ + +++ +SL   S+++  +C ALN+           A YDF       L    + +S
Sbjct: 358 KESLPLVDQYSLKVFSDYLDNICSALNLNNDKTNEKLARAAYDFLTAQINKLFEDNSKSS 417

Query: 191 TPEWASALTNIRTWM--YGMYLALNAEQCSCDFINYAKLISEIKRSACDKTIFEDPSKFL 364
            P + S   +++ ++     YL  N   CS   ++  KL+ ++     D     +P + L
Sbjct: 418 QPSFESFSEDVQCFLNHINTYLINNPTACSNSIVSTIKLLKQL-----DNKRSFNPEQSL 472

Query: 365 ASVCSQHEMMERLL 406
            + C   E+M +LL
Sbjct: 473 KNFCGYKEIMIQLL 486


>tr|Q4S0P1|Q4S0P1_TETNG Chromosome 2 SCAF14781, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00025937001 PE=4 SV=1
          Length = 1313

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 308 EIKRSACDKTIFEDPSKFLASVC-SQHEMMERLLSQVEENSNCCAKLSEGQELALSAL 478
           +I+  +CD+ +  D S  LA +C +  E+ + + + ++E + CCA +  G  + L+ L
Sbjct: 682 DIEALSCDELLM-DTSALLAELCVNPEELAKAIRADIKEKTGCCASVGMGSNILLARL 738


>tr|Q5X3G0|Q5X3G0_LEGPA Putative uncharacterized protein
           OS=Legionella pneumophila (strain Paris) GN=lpp2076 PE=4
           SV=1
          Length = 542

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
 Frame = +2

Query: 59  LLSEHVKELCKALNIVASFQKGNALTAGYDF---DRTLLLCAGNFASTPEWASALTNIRT 229
           + S+++  +C ALN+           A YDF       L    + +S P + S   +++ 
Sbjct: 371 VFSDYLDNICSALNLNNDKTNEKLARAAYDFLTAQINKLFEDNSKSSQPSFESFSEDVQC 430

Query: 230 WM--YGMYLALNAEQCSCDFINYAKLISEIKRSACDKTIFEDPSKFLASVCSQHEMMERL 403
           ++     YL  N   CS   ++  KL+ ++     D     +P + L + C   E+M +L
Sbjct: 431 FLNHINTYLINNPTACSNSIVSTIKLLKQL-----DNKRSFNPEQSLKNFCGYKEIMIQL 485

Query: 404 L 406
           L
Sbjct: 486 L 486


>tr|Q5F720|Q5F720_NEIG1 Putative exodeoxyribonuclease V OS=Neisseria
            gonorrhoeae (strain ATCC 700825 / FA 1090) GN=NGO1369
            PE=4 SV=1
          Length = 1068

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +2

Query: 149  FDRTLLLCAGNFASTPEWASALTNIRTWMYGMYLALNAEQCSCDFINYAKLISEIKRSAC 328
            F +T L  A  FA   +W +AL   +T  YG  ++   +    D+   A +     ++  
Sbjct: 985  FAKTSLAAAEAFAQKQDWEAALKKAQTAYYGSKVSKGQK----DYTEVALVFGNASQNPL 1040

Query: 329  DKTIFEDPSKFLASVCSQHEMME 397
            ++ +FE+ ++ LA   +  E  E
Sbjct: 1041 EQPLFENLARLLADTLAAAEKRE 1063


>tr|B4RN93|B4RN93_NEIG2 Putative exodeoxyribonuclease V OS=Neisseria
            gonorrhoeae (strain NCCP11945) GN=NGK_1603 PE=4 SV=1
          Length = 1069

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +2

Query: 149  FDRTLLLCAGNFASTPEWASALTNIRTWMYGMYLALNAEQCSCDFINYAKLISEIKRSAC 328
            F +T L  A  FA   +W +AL   +T  YG  ++   +    D+   A +     ++  
Sbjct: 986  FAKTSLAAAEAFAQKQDWEAALKKAQTAYYGSKVSKGQK----DYTEVALVFGNASQNPL 1041

Query: 329  DKTIFEDPSKFLASVCSQHEMME 397
            ++ +FE+ ++ LA   +  E  E
Sbjct: 1042 EQPLFENLARLLADTLAAAEKRE 1064


>tr|B5JNT0|B5JNT0_9BACT SNF2 family N-terminal domain protein
           OS=Verrucomicrobiae bacterium DG1235 GN=VDG1235_3002
           PE=4 SV=1
          Length = 831

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
 Frame = +2

Query: 155 RTLLLCAGNFASTPEWASALTNIRTWM----YGMYLALNAEQCSCDFINYAKLISEIKRS 322
           RTL++C  +    P W S        M    YG  LA  AE+     I+YA L + I++ 
Sbjct: 422 RTLVVCPASVV--PVWISEFAKFAPGMTIGRYGRKLARGAEEPDVLVISYALLRNRIEKI 479

Query: 323 ACDKTIFEDPSKFLASVCSQHEMMERLLSQVEENSNCCAKLSEGQELALS 472
           AC+        +F  +V  + + ++   S+V   S  C ++   + +AL+
Sbjct: 480 ACE--------EFEYAVIDEAQFIKNPKSKV---SRSCRRIKAKRRIALT 518


>tr|B5VNK8|B5VNK8_YEAS6 YLR308Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_123400 PE=4
           SV=1
          Length = 312

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
 Frame = +2

Query: 146 DFDRTLLLCAGNFASTPEWASALTNIRTWMYGMYLALNAEQCSCDFINYAKL--ISEIKR 319
           DF   +L  A      P+W SA T ++ W       L+      DFI+++++    E  +
Sbjct: 36  DFQFPVLERAATKTPFPDWLSAFTGLKEWP-----GLDPPYIPLDFIDFSQIPDYKEYDQ 90

Query: 320 SACDKTIFEDPSKFLASVCSQHEMMERLLSQVEENSNCCAKLS----EGQELALSALVDA 487
           + CD ++  D   F    C++H           ++   C+KLS    +G   + + L+D 
Sbjct: 91  NHCD-SVPRDSCSFDCHHCTEH-----------DDVYTCSKLSQTFDDGPSASTTKLLDR 138

Query: 488 SLH 496
             H
Sbjct: 139 LKH 141


>tr|B3RHI7|B3RHI7_YEAS1 Chitin deacetylase OS=Saccharomyces
           cerevisiae (strain RM11-1a) GN=SCRG_04257 PE=4 SV=1
          Length = 312

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
 Frame = +2

Query: 146 DFDRTLLLCAGNFASTPEWASALTNIRTWMYGMYLALNAEQCSCDFINYAKL--ISEIKR 319
           DF   +L  A      P+W SA T ++ W       L+      DFI+++++    E  +
Sbjct: 36  DFQFPVLERAATKTPFPDWLSAFTGLKEWP-----GLDPPYIPLDFIDFSQIPDYKEYDQ 90

Query: 320 SACDKTIFEDPSKFLASVCSQHEMMERLLSQVEENSNCCAKLS----EGQELALSALVDA 487
           + CD ++  D   F    C++H           ++   C+KLS    +G   + + L+D 
Sbjct: 91  NHCD-SVPRDSCSFDCHHCTEH-----------DDVYTCSKLSQTFDDGPSASTTKLLDR 138

Query: 488 SLH 496
             H
Sbjct: 139 LKH 141


>tr|A7A1J3|A7A1J3_YEAS7 Chitin deacetylase OS=Saccharomyces
           cerevisiae (strain YJM789) GN=CDA2 PE=4 SV=1
          Length = 312

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
 Frame = +2

Query: 146 DFDRTLLLCAGNFASTPEWASALTNIRTWMYGMYLALNAEQCSCDFINYAKL--ISEIKR 319
           DF   +L  A      P+W SA T ++ W       L+      DFI+++++    E  +
Sbjct: 36  DFQFPVLERAATKTPFPDWLSAFTGLKEWP-----GLDPPYIPLDFIDFSQIPDYKEYDQ 90

Query: 320 SACDKTIFEDPSKFLASVCSQHEMMERLLSQVEENSNCCAKLS----EGQELALSALVDA 487
           + CD ++  D   F    C++H           ++   C+KLS    +G   + + L+D 
Sbjct: 91  NHCD-SVPRDSCSFDCHHCTEH-----------DDVYTCSKLSQTFDDGPSASTTKLLDR 138

Query: 488 SLH 496
             H
Sbjct: 139 LKH 141


>tr|Q4SA66|Q4SA66_TETNG Chromosome 12 SCAF14692, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00021590001 PE=4 SV=1
          Length = 222

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 58  SLVRTCKRAL*GFEYCCFLS-ERECFNSGVRFRSHFIVVC 174
           ++V TC+      +YCCFL   ++CF     ++ HF+V+C
Sbjct: 135 AVVLTCELCASPVKYCCFLPVGQKCFCRKPEYQGHFVVLC 174