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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918303
Clone id YMU001_000111_H04
Library
Length 288
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTCAGCAGGAGTATTTGCCTCTCCAGCCCCATCATGATGATCGTCTTCAACTCCGGGT
TCTGATGCCTTCCCACGGGGTTTCCCTTCTCGTTGTTTGCAGCTGCATTTGCCGGTTTGT
TCTTGCATCGCACCTCCCTCGACGCAGCTACAATATCTGTAGGTGCCTTTCTCTGCCCTC
TCCATTTGATTGGATTTCCTGTTGGTTCCTTGCCCTTGCCTCGCCGACGACCTGGCCATG
GCTCCTTGCCATCATCCTGTAACAGGCCTGCAGTGGAGAAGTCACGGA
■■Homology search results ■■ -
sp_hit_id Q00174
Definition sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster
Align length 60
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918303|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_H04.
         (288 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanog...    32   1.3  
sp|Q22122|U418_CAEEL UPF0418 protein T03G11.3 OS=Caenorhabditis ...    31   2.2  
sp|A0JM12|MEG10_XENTR Multiple epidermal growth factor-like doma...    30   2.8  
sp|A0JP43|EFCB5_MOUSE EF-hand calcium-binding domain-containing ...    30   2.8  
sp|O75095|MEGF6_HUMAN Multiple epidermal growth factor-like doma...    30   3.7  
sp|P28175|LFC_TACTR Limulus clotting factor C OS=Tachypleus trid...    30   4.8  
sp|Q26422|LFC_CARRO Limulus clotting factor C OS=Carcinoscorpius...    30   4.8  
sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio GN=...    30   4.8  
sp|Q9EPT5|SO2A1_MOUSE Solute carrier organic anion transporter f...    29   6.3  
sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=...    29   6.3  
sp|Q9P7T1|SIB1_SCHPO Hydroxamate-type ferrichrome siderophore pe...    29   8.3  
sp|A7HM51|RL4_FERNB 50S ribosomal protein L4 OS=Fervidobacterium...    29   8.3  
sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=...    29   8.3  

>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila
           melanogaster GN=LanA PE=1 SV=2
          Length = 3712

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = -2

Query: 206 TNRKSNQMERAEKG-----TYRYCSCVEGGAMQE----QTGKCSCKQREGKPRGKASEPG 54
           TN   +  ER + G     T  YC C   G   E    Q+G+C C++  G PR     PG
Sbjct: 518 TNFGGDNCERCKHGYFNYPTCSYCDCDNQGTESEICNKQSGQCICREGFGGPRCDQCLPG 577


>sp|Q22122|U418_CAEEL UPF0418 protein T03G11.3 OS=Caenorhabditis
           elegans GN=T03G11.3 PE=2 SV=3
          Length = 322

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 233 RSSARQGQGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKCSCKQREGKPRGK 69
           R  A + QG N KS+   RA  G YR       G  QE + +    +R+   RG+
Sbjct: 143 REQATRKQGGNLKSSGGNRALTGNYRSTPSKNEGKKQESSSRNGSAERKPTTRGR 197


>sp|A0JM12|MEG10_XENTR Multiple epidermal growth factor-like domains
           10 OS=Xenopus tropicalis GN=megf10 PE=2 SV=1
          Length = 1114

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -2

Query: 272 CRPVTG*WQGAMARSSARQGQGTNRKSNQMERAEKGTY-----RYCSCVEGGAMQEQTGK 108
           C P+TG    A   SS  +G          ER ++GTY     + C C  G +    TG+
Sbjct: 159 CNPITG----ACHCSSGYKGWRCE------ERCDQGTYGNDCQQKCQCQNGASCDHVTGE 208

Query: 107 CSC 99
           C C
Sbjct: 209 CRC 211


>sp|A0JP43|EFCB5_MOUSE EF-hand calcium-binding domain-containing
           protein 5 OS=Mus musculus GN=Efcab5 PE=2 SV=2
          Length = 1406

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = -2

Query: 248 QGAMARSSARQGQGTNRKSNQMERAEKGTYRYCSCVE----GGAMQEQTGKCSCKQREGK 81
           +G++A   +R+  G N+   +   AE+G+ R  S VE     G++ EQ  + S    + +
Sbjct: 313 RGSVAEQGSRRSSGVNQTQQRGSVAEQGS-RRSSAVEQTQQRGSVAEQGSRRSSTVEQTR 371

Query: 80  PRGKASEPG 54
            RG  +E G
Sbjct: 372 QRGSVAEQG 380


>sp|O75095|MEGF6_HUMAN Multiple epidermal growth factor-like domains 6
            OS=Homo sapiens GN=MEGF6 PE=2 SV=3
          Length = 1229

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/58 (32%), Positives = 22/58 (37%)
 Frame = -2

Query: 272  CRPVTG*WQGAMARSSARQGQGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKCSC 99
            C PVTG       R+  R  +G  +      R   G    CSC  GG      G CSC
Sbjct: 1035 CDPVTGTCLCPPGRAGVRCERGCPQN-----RFGVGCEHTCSCRNGGLCHASNGSCSC 1087


>sp|P28175|LFC_TACTR Limulus clotting factor C OS=Tachypleus
           tridentatus PE=1 SV=1
          Length = 1019

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 152 CSCVEGGAMQEQTGKCSCKQR 90
           C C  GG   ++TG C+C+ R
Sbjct: 110 CQCKNGGICDQRTGACTCRDR 130


>sp|Q26422|LFC_CARRO Limulus clotting factor C OS=Carcinoscorpius
           rotundicauda PE=2 SV=1
          Length = 1019

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 152 CSCVEGGAMQEQTGKCSCKQR 90
           C C  GG   ++TG C+C+ R
Sbjct: 110 CQCKNGGICDQRTGACACRDR 130


>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio
           GN=lamc1 PE=2 SV=2
          Length = 1593

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -2

Query: 158 RYCSCVEGGAMQE---QTGKCSCKQ 93
           R CSC   G+ QE   QTG+C CK+
Sbjct: 427 RPCSCNPAGSTQECDVQTGRCQCKE 451


>sp|Q9EPT5|SO2A1_MOUSE Solute carrier organic anion transporter
           family member 2A1 OS=Mus musculus GN=Slco2a1 PE=1 SV=2
          Length = 643

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 161 YRYCSCVEGGAMQEQTGKC--SCKQ 93
           Y  CSCV GG+   +TG C  SC Q
Sbjct: 488 YLNCSCVTGGSASAKTGSCPTSCAQ 512


>sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens
           GN=LAMB2 PE=1 SV=2
          Length = 1798

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -2

Query: 158 RYCSCVEGGAMQEQ----TGKCSCKQREGKPRGKASEPG 54
           R C C  GGA+  Q    TG+C C+Q     R +  +PG
Sbjct: 520 RPCDCDVGGALDPQCDEGTGQCHCRQHMVGRRCEQVQPG 558
tr_hit_id B6KGK7
Definition tr|B6KGK7|B6KGK7_TOXGO Dipeptidyl peptidase IV domain-containing protein OS=Toxoplasma gondii ME49
Align length 74
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918303|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_H04.
         (288 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KGK7|B6KGK7_TOXGO Dipeptidyl peptidase IV domain-containing...    36   0.84 
tr|Q2H014|Q2H014_CHAGB Predicted protein OS=Chaetomium globosum ...    36   1.1  
tr|A6RNA9|A6RNA9_BOTFB Putative uncharacterized protein OS=Botry...    36   1.1  
tr|A6UE61|A6UE61_SINMW Helicase domain protein OS=Sinorhizobium ...    35   1.9  
tr|Q2GU67|Q2GU67_CHAGB Predicted protein OS=Chaetomium globosum ...    35   2.4  
tr|A3ZAZ0|A3ZAZ0_9SYNE Putative uncharacterized protein OS=Synec...    33   7.1  
tr|A3Z109|A3Z109_9SYNE Putative uncharacterized protein OS=Synec...    33   7.1  
tr|Q121A0|Q121A0_POLSJ Sensor protein OS=Polaromonas sp. (strain...    33   9.3  
tr|A6W889|A6W889_KINRD Putative anti-sigma regulatory factor, se...    33   9.3  
tr|Q29FI3|Q29FI3_DROPS GA10179 OS=Drosophila pseudoobscura pseud...    33   9.3  
tr|B6KPW0|B6KPW0_TOXGO DNA/pantothenate metabolism flavoprotein ...    33   9.3  
tr|B4H185|B4H185_DROPE GL22528 OS=Drosophila persimilis GN=GL225...    33   9.3  
tr|Q4PAY5|Q4PAY5_USTMA Putative uncharacterized protein OS=Ustil...    33   9.3  

>tr|B6KGK7|B6KGK7_TOXGO Dipeptidyl peptidase IV domain-containing
           protein OS=Toxoplasma gondii ME49 GN=TGME49_045500 PE=4
           SV=1
          Length = 1584

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
 Frame = -2

Query: 224 ARQGQGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKCSCKQREGKPR---------- 75
           A  G+  NR+  + E   +  +   +CVEGGA +E +G     +++GK +          
Sbjct: 722 AEDGEEENRREEREEEWSEDEHAGSACVEGGAREESSGDSRLGEKKGKTQELSRDAEQRH 781

Query: 74  -GKASEPGVEDDHH 36
             +A E  V+++HH
Sbjct: 782 SEEAEELLVQEEHH 795


>tr|Q2H014|Q2H014_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_04882 PE=4 SV=1
          Length = 692

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 27/78 (34%), Positives = 34/78 (43%)
 Frame = -2

Query: 245 GAMARSSARQGQGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKCSCKQREGKPRGKA 66
           G  A+ +A+ G G    S Q     KGT +  S  EG    E+ GK       GK + K 
Sbjct: 564 GTRAKPAAKPGAGAETGSGQGSGQGKGTGKGKS--EGRGGNEKNGK-----EMGKDKDKE 616

Query: 65  SEPGVEDDHHDGAGEANT 12
            E   E D   G G+ANT
Sbjct: 617 KEKDKEKDKEKGKGKANT 634


>tr|A6RNA9|A6RNA9_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_01931
           PE=4 SV=1
          Length = 903

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -2

Query: 251 WQGAMARSSARQGQGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKCSCK---QREGK 81
           W  A  +S  +Q QGTN  SN+   +  G        +GG  QEQ GK   K   Q+EG 
Sbjct: 185 WSAAKVQSQMQQSQGTNFNSNEPGSSTNGN-------KGGQKQEQDGKQGGKKGNQQEGF 237

Query: 80  PRGKASE 60
             G ++E
Sbjct: 238 NFGNSTE 244


>tr|A6UE61|A6UE61_SINMW Helicase domain protein OS=Sinorhizobium
            medicae (strain WSM419) GN=Smed_3115 PE=4 SV=1
          Length = 1026

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 251  WQGAMARSSARQG--QGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKCSCKQREGKP 78
            W+    + + RQG  QG  R+  Q     +G        EGG  Q   GK   K REGKP
Sbjct: 914  WRPGTRQDNQRQGGRQGEQRRGGQRHAQTEGR-------EGGRRQGAQGKPPGKPREGKP 966

Query: 77   R-GKASE 60
            + GK SE
Sbjct: 967  QEGKGSE 973


>tr|Q2GU67|Q2GU67_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_08487 PE=4 SV=1
          Length = 179

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
 Frame = -2

Query: 260 TG*WQGAMARSSARQGQGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKC-------S 102
           T  W G ++ +   Q   T+R S +  R      R CS      +Q+QTG+C       +
Sbjct: 11  TALWPGLVSANPPEQPHRTSRASPEQHR------RGCSVHSRSVVQQQTGQCTTPGATVN 64

Query: 101 CKQREGKPRGKASEPGVEDDHHDGAGEANTPAE 3
               E  P  K S PG        AG++ T A+
Sbjct: 65  APTTEATPAAKTSPPGF------SAGDSTTTAQ 91


>tr|A3ZAZ0|A3ZAZ0_9SYNE Putative uncharacterized protein
           OS=Synechococcus sp. RS9917 GN=RS9917_00030 PE=4 SV=1
          Length = 535

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/79 (27%), Positives = 32/79 (40%)
 Frame = -2

Query: 242 AMARSSARQGQGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKCSCKQREGKPRGKAS 63
           A+A  SA      +R++    R         S   G  +  Q G C     +G   GK  
Sbjct: 110 AIASYSAELAYAHSREARHFYRVTGHLLARDSAAVGNWLTRQRGGCIAAGVDGPFTGKGY 169

Query: 62  EPGVEDDHHDGAGEANTPA 6
             G+ DD + G G+A +PA
Sbjct: 170 SLGIIDDPYKGPGDAASPA 188


>tr|A3Z109|A3Z109_9SYNE Putative uncharacterized protein
           OS=Synechococcus sp. WH 5701 GN=WH5701_06831 PE=4 SV=1
          Length = 547

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/79 (27%), Positives = 32/79 (40%)
 Frame = -2

Query: 242 AMARSSARQGQGTNRKSNQMERAEKGTYRYCSCVEGGAMQEQTGKCSCKQREGKPRGKAS 63
           A+A  SA      +R++    R         S   G  +  Q G C     +G   GK  
Sbjct: 122 AIASYSAELAYAHSREARHFYRVTGHLLARDSAAVGNWLTRQRGGCIAAGVDGPFTGKGY 181

Query: 62  EPGVEDDHHDGAGEANTPA 6
             G+ DD + G G+A +PA
Sbjct: 182 SLGIIDDPYKGPGDAASPA 200


>tr|Q121A0|Q121A0_POLSJ Sensor protein OS=Polaromonas sp. (strain
           JS666 / ATCC BAA-500) GN=Bpro_5020 PE=4 SV=1
          Length = 420

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/77 (29%), Positives = 39/77 (50%)
 Frame = +2

Query: 29  PHHDDRLQLRVLMPSHGVSLLVVCSCICRFVLASHLPRRSYNICRCLSLPSPFDWISCWF 208
           P   + L LRVL    G+SL++V   + R    S LP + ++    L+LP  F W+   +
Sbjct: 47  PQPYENLALRVLASLLGLSLILVTYWV-RHEPNSQLPNKVFSAVYWLNLPVLFTWM---Y 102

Query: 209 LALASPTTWPWLLAIIL 259
           L  +  T W   +A+++
Sbjct: 103 LCNSGSTMWLGTMAVMV 119


>tr|A6W889|A6W889_KINRD Putative anti-sigma regulatory factor,
           serine/threonine protein kinase OS=Kineococcus
           radiotolerans (strain ATCC BAA-149 / DSM 14245 /
           SRS30216) GN=Krad_1542 PE=4 SV=1
          Length = 355

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 268 GLLQDDGKEPWPGRRRGKGKEPTGNP 191
           G L+ +   PWPG RRG+   P G+P
Sbjct: 165 GQLRGEAPHPWPGSRRGERPAPAGSP 190


>tr|Q29FI3|Q29FI3_DROPS GA10179 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA10179 PE=4 SV=2
          Length = 3708

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = -2

Query: 206 TNRKSNQMERAEKGTYRY-----CSCVEGGAMQE----QTGKCSCKQREGKPRGKASEPG 54
           TN   +  ER + G Y Y     C C   G   E    Q+G+C C++  G PR     PG
Sbjct: 518 TNFGGDNCERCKHGYYNYPACSYCDCDNQGTESEICNKQSGQCICREGFGGPRCDQCLPG 577