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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918214
Clone id YMU001_000110_H01
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCAGTGCAAAATTGAGGCAGCCACCCTCTGCTGGATGGTATCCCAGGTCGCAAACATGG
GAGCCCCTTCCTACTAGCTTGGTTACTCATAGTCAGCCAAGCAGCTTTACAGGACTTGTC
TCAAATCCAGACATTTCACGTCTGGATGCGGACGTCCTGTACAGGCAGAGGCTTGATGCA
TTGGACAGGAGAGCTTACGTGCTGGATCCTGTATTGGATGCATCTCTGAGACATGTGGGT
GTCCCCAGTGAATATGGGCGCAGAAGGGTTCCTGATGATCTATATGCAGTGGAGCGCAGT
CTGCCTCCATCTAAAGGGGCACTGCTCTATGATGATCTTTACAGGGAGATGCCCTACCAA
AGGGAAGCTCTTTACAGCAGCCGTGATGATGGCCGTTCGGCGCTTTCTTACAAGCCCTTA
ACCTGGGGCTATTAGGAGTAGAGGAGCTCTTGAACTTGGTGCTCATTGTGGGACCGTATT
TCTTTGGTTTGTCATATTAGATGCCTTGAAGCAACTATGGCTTTCTTACTGGAGCACTCA
ACAGCTGGTCTATCTTGCTGTGACC
■■Homology search results ■■ -
sp_hit_id A7M7C7
Definition sp|A7M7C7|CORL2_MOUSE Ladybird homeobox corepressor 1-like protein OS=Mus musculus
Align length 124
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918214|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_H01.
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7M7C7|CORL2_MOUSE Ladybird homeobox corepressor 1-like prote...    33   1.3  
sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus...    31   3.7  
sp|Q2VWA4|CORL2_HUMAN Ladybird homeobox corepressor 1-like prote...    31   3.7  
sp|Q09793|NUP45_SCHPO Nucleoporin nup45 OS=Schizosaccharomyces p...    31   4.9  
sp|Q5A931|LCMT2_CANAL Leucine carboxyl methyltransferase 2 OS=Ca...    31   4.9  
sp|Q21771|CPG3_CAEEL Chondroitin proteoglycan 3 OS=Caenorhabditi...    30   6.3  

>sp|A7M7C7|CORL2_MOUSE Ladybird homeobox corepressor 1-like protein
           OS=Mus musculus GN=Corl2 PE=1 SV=1
          Length = 1008

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
 Frame = -1

Query: 487 PKKYGPTMSTKFKSSST---------PNSPRLRACKKAPNGHHHGCCKELPFGRASPCKD 335
           P + G T  T   SS           P+ P L   +KA  G +H      P G     KD
Sbjct: 574 PAEQGVTSGTGSASSGAGSVGTRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGG----KD 629

Query: 334 HHRAVPL*MEADCAPLHIDHQEPFCAHIHWGHPHVSEMHPIQDPARKLSCPMHQASACTG 155
              ++    +   A     H  P   H H  HPH    HP Q P+  L          + 
Sbjct: 630 DAESLA---KLHGASAGTPHSAPAHHHHHHHHPHHHHHHPPQPPSPLLLLQPQPDEPGSE 686

Query: 154 RPHP 143
           R HP
Sbjct: 687 RHHP 690


>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus
           musculus GN=Rnf111 PE=1 SV=1
          Length = 989

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 28/100 (28%), Positives = 35/100 (35%)
 Frame = -1

Query: 469 TMSTKFKSSSTPNSPRLRACKKAPNGHHHGCCKELPFGRASPCKDHHRAVPL*MEADCAP 290
           T S+    S  P  PRL +C          C +  P G  S  + HH        + C  
Sbjct: 459 TASSAVPESGPPAMPRLPSC----------CPQHSPCGGTS--QSHHALAH--PHSSCFQ 504

Query: 289 LHIDHQEPFCAHIHWGHPHVSEMHPIQDPARKLSCPMHQA 170
            H  H +    H H  HP V       DPA  +  P  QA
Sbjct: 505 QHGHHFQHHHHHHHTPHPAVPVSPSFSDPACPVERPQVQA 544


>sp|Q2VWA4|CORL2_HUMAN Ladybird homeobox corepressor 1-like protein
           OS=Homo sapiens GN=CORL2 PE=1 SV=2
          Length = 1001

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 27/98 (27%), Positives = 34/98 (34%)
 Frame = -1

Query: 436 PNSPRLRACKKAPNGHHHGCCKELPFGRASPCKDHHRAVPL*MEADCAPLHIDHQEPFCA 257
           P+ P L   +KA  G +H      P G     KD   ++     A     H     P   
Sbjct: 602 PHHPHLLEGRKAGGGSYHHSSAFRPVGG----KDDAESLAKLHGASAGAPHSAQTHPH-- 655

Query: 256 HIHWGHPHVSEMHPIQDPARKLSCPMHQASACTGRPHP 143
           H H  H H    HP Q P+  L  P       + R HP
Sbjct: 656 HHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHP 693


>sp|Q09793|NUP45_SCHPO Nucleoporin nup45 OS=Schizosaccharomyces
           pombe GN=nup45 PE=1 SV=2
          Length = 425

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
 Frame = +1

Query: 19  QPPSAGWYPRSQTWEPLPTSLVTHSQPSSFTGLVSNPDI------SRLDADVLYRQRLDA 180
           QP  +  +  S   +  P       QPS+ T L SNP I      S L+A+   ++ LD 
Sbjct: 192 QPSGSTGFGLSNNTQTTPFFSAAQQQPST-TQLPSNPAINATTRYSSLNANT--QKFLDD 248

Query: 181 LDRRAYVLDPVLDASLRHVGVPSEYGRRRVPDDLYAVERSLPPSKGALLYD 333
           LD+  +    + +     +G  SE     VP+D+  V+R L     ALL D
Sbjct: 249 LDKEIFSQIQLAEELQTKLGTVSELVES-VPNDVAEVQRRLSSVSTALLID 298


>sp|Q5A931|LCMT2_CANAL Leucine carboxyl methyltransferase 2
           OS=Candida albicans GN=PPM2 PE=3 SV=1
          Length = 689

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 246 GDTHMSQRCIQYRIQHVSSPVQCIKPLPVQDVRIQ 142
           G T+     + Y  QH+ SP+QC++  P + +++Q
Sbjct: 251 GATNAFATKMLYHFQHLRSPIQCVETYPTEKLQLQ 285


>sp|Q21771|CPG3_CAEEL Chondroitin proteoglycan 3 OS=Caenorhabditis
           elegans GN=cpg-3 PE=1 SV=1
          Length = 292

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
 Frame = +3

Query: 111 RTCLKSRHFTSGCGRPVQ--AEA*CIGQESLRAGSCIGCISETCGCPQ*IWAQKGS**SI 284
           R  L      +G   P    + A C G     +G CIG ++ TC C   ++       S 
Sbjct: 170 RLSLNETETETGTSAPATCVSSAVCYGDSGCGSGKCIGALAGTCNCNSCVFGWPCQEDSA 229

Query: 285 CSGAQSA 305
           C G   A
Sbjct: 230 CGGFNGA 236
tr_hit_id B4FIG2
Definition tr|B4FIG2|B4FIG2_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 121
Score (bit) 40.0
E-value 0.089
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918214|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_H01.
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4FIG2|B4FIG2_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.089
tr|A4Y3V5|A4Y3V5_SHEPC Rhomboid family protein OS=Shewanella put...    37   0.75 
tr|A1RN32|A1RN32_SHESW Rhomboid family protein OS=Shewanella sp....    37   0.75 
tr|A2UX26|A2UX26_SHEPU Rhomboid-like protein OS=Shewanella putre...    37   0.75 
tr|A2BGD9|A2BGD9_DANRE Novel protein similar to human deafness, ...    36   1.7  
tr|A4LPC5|A4LPC5_BURPS Putative uncharacterized protein OS=Burkh...    35   2.9  
tr|Q3JM63|Q3JM63_BURP1 Peptide synthetase NRPS5-4-3 OS=Burkholde...    34   6.4  
tr|A1VX26|A1VX26_POLNA Putative uncharacterized protein OS=Polar...    34   6.4  
tr|B6PCB9|B6PCB9_BRAFL Putative uncharacterized protein (Fragmen...    34   6.4  
tr|B6LC56|B6LC56_BRAFL Putative uncharacterized protein OS=Branc...    34   6.4  
tr|Q63K54|Q63K54_BURPS Putative membrane protein OS=Burkholderia...    33   8.3  
tr|Q4V2Q5|Q4V2Q5_BURMA Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|Q3JL47|Q3JL47_BURP1 Putative membrane protein OS=Burkholderia...    33   8.3  
tr|A3P6W3|A3P6W3_BURP0 Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|A3MF35|A3MF35_BURM7 Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|A2RXX6|A2RXX6_BURM9 Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|A1UW74|A1UW74_BURMS Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|B7CYW2|B7CYW2_BURPS Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|B2HCI8|B2HCI8_BURPS Putative membrane protein OS=Burkholderia...    33   8.3  
tr|B1H8J7|B1H8J7_BURPS Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|A9JZ20|A9JZ20_BURMA Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|A5TCV8|A5TCV8_BURMA Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|A5PM29|A5PM29_BURMA IcmF1 OS=Burkholderia mallei GN=icmF1 PE=...    33   8.3  
tr|A5JD68|A5JD68_BURMA Putative uncharacterized protein OS=Burkh...    33   8.3  
tr|Q7S322|Q7S322_NEUCR Predicted protein OS=Neurospora crassa GN...    33   8.3  

>tr|B4FIG2|B4FIG2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 293

 Score = 40.0 bits (92), Expect = 0.089
 Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
 Frame = -1

Query: 472 PTMSTKFKSSSTPNSPRLRACKKAPNGHHHGCCKELPFGRASPCKDHHRAVPL*MEADCA 293
           PT++  F+  S P  P   +     + HHHG    L +G A    DHH   P    +  +
Sbjct: 36  PTITFAFQQPSPPPPPTATSSLALAHPHHHGV---LGYGSACLLLDHHH--PTTATSSAS 90

Query: 292 PLHIDHQE----PFCAHIHWGH----PHVSEMHPIQDPARKLSCPMH---QASACTGRPH 146
           P H         P   H   GH    PHVS    +  P R    P H    A+AC   P 
Sbjct: 91  PSHAAPSSVVPAPTLHHHFHGHAAGAPHVS----LSPPTRASPPPHHPWSTAAACEEEPE 146

Query: 145 P 143
           P
Sbjct: 147 P 147


>tr|A4Y3V5|A4Y3V5_SHEPC Rhomboid family protein OS=Shewanella
           putrefaciens (strain CN-32 / ATCC BAA-453)
           GN=Sputcn32_0909 PE=4 SV=1
          Length = 523

 Score = 37.0 bits (84), Expect = 0.75
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +2

Query: 56  HGSPFLLAWLLIVSQAALQDLSQIQTFHVWMRTSCTGRGLMH--WTGELTCWILYWMHL* 229
           H   +++ WLL+ +      L +++   V + +    + L H   T EL  W+ +     
Sbjct: 263 HKLAWIIGWLLVGALVWYVMLRRVKLDEVALNSGALAKQLDHRNTTSELQSWLEFIRPKA 322

Query: 230 DMWVSPVNMGAEGFLMIYMQWSAV-CLHLKGH 322
              V+PV M    F+ I+M WS+   +H + H
Sbjct: 323 GFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSH 354


>tr|A1RN32|A1RN32_SHESW Rhomboid family protein OS=Shewanella sp.
           (strain W3-18-1) GN=Sputw3181_3263 PE=4 SV=1
          Length = 523

 Score = 37.0 bits (84), Expect = 0.75
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +2

Query: 56  HGSPFLLAWLLIVSQAALQDLSQIQTFHVWMRTSCTGRGLMH--WTGELTCWILYWMHL* 229
           H   +++ WLL+ +      L +++   V + +    + L H   T EL  W+ +     
Sbjct: 263 HKLAWIIGWLLVGALVWYVMLRRVKLDEVALNSGALAKQLDHRNTTSELQSWLEFIRPKA 322

Query: 230 DMWVSPVNMGAEGFLMIYMQWSAV-CLHLKGH 322
              V+PV M    F+ I+M WS+   +H + H
Sbjct: 323 GFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSH 354


>tr|A2UX26|A2UX26_SHEPU Rhomboid-like protein OS=Shewanella
           putrefaciens 200 GN=Sput200DRAFT_3220 PE=4 SV=1
          Length = 523

 Score = 37.0 bits (84), Expect = 0.75
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +2

Query: 56  HGSPFLLAWLLIVSQAALQDLSQIQTFHVWMRTSCTGRGLMH--WTGELTCWILYWMHL* 229
           H   +++ WLL+ +      L +++   V + +    + L H   T EL  W+ +     
Sbjct: 263 HKLAWIIGWLLVGALVWYVMLRRVKLDEVALNSGALAKQLDHRNTTSELQSWLEFIRPKA 322

Query: 230 DMWVSPVNMGAEGFLMIYMQWSAV-CLHLKGH 322
              V+PV M    F+ I+M WS+   +H + H
Sbjct: 323 GFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSH 354


>tr|A2BGD9|A2BGD9_DANRE Novel protein similar to human deafness,
           autosomal recessive 31 (DFNB31) (Fragment) OS=Danio
           rerio GN=RP71-10D23.2-001 PE=4 SV=1
          Length = 334

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 25/84 (29%), Positives = 29/84 (34%)
 Frame = -1

Query: 391 HHHGCCKELPFGRASPCKDHHRAVPL*MEADCAPLHIDHQEPFCAHIHWGHPHVSEMHPI 212
           H H  C        SPC  HH           +P  I H  P C+H H   P  S  H  
Sbjct: 54  HSHLSCSS----HTSPCTIHHTT---------SPCSISHTPPPCSH-HHSSPRTSSYHSS 99

Query: 211 QDPARKLSCPMHQASACTGRPHPD 140
               R L   +    A T  PHP+
Sbjct: 100 PSSGRDLVQFLMNRQAGTLSPHPE 123


>tr|A4LPC5|A4LPC5_BURPS Putative uncharacterized protein
           OS=Burkholderia pseudomallei 305 GN=BURPS305_2104 PE=4
           SV=1
          Length = 1352

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 30/93 (32%), Positives = 41/93 (44%)
 Frame = +1

Query: 145 DADVLYRQRLDALDRRAYVLDPVLDASLRHVGVPSEYGRRRVPDDLYAVERSLPPSKGAL 324
           DAD    + LD+LD R   L  VL A     G P       +P +L  +  +L     A 
Sbjct: 274 DADAFVARALDSLDARLGALRVVLAAR----GEPPSPRALMLPHELACLRPALEAFARAA 329

Query: 325 LYDDLYREMPYQREALYSSRDDGRSALSYKPLT 423
              ++Y+E PY R  L++S   GR A     LT
Sbjct: 330 FGPNVYQETPYLRGLLFAS---GRQAGGAPSLT 359


>tr|Q3JM63|Q3JM63_BURP1 Peptide synthetase NRPS5-4-3 OS=Burkholderia
           pseudomallei (strain 1710b) GN=blmVI PE=3 SV=1
          Length = 1005

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 487 PKKYGPTMSTKFKSSSTPNSPRLRA-CKKAPNGHHHGCCKELPFGRASPCKDHHRAVP 317
           P  + PT     +S+  P +PR R+ C +A      GCC   P  R+ P +   RA+P
Sbjct: 8   PSAHAPTSRNSARSAPRPPTPRRRSRCSRAAACSGGGCCSGTPTARSIPTR---RAMP 62


>tr|A1VX26|A1VX26_POLNA Putative uncharacterized protein
            OS=Polaromonas naphthalenivorans (strain CJ2)
            GN=Pnap_4795 PE=4 SV=1
          Length = 1809

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = +1

Query: 115  LVSNPDISRLDADVLYRQRLDALDRRAYVLDPVLD 219
            LVS  DI RLDA+V  R+R+DA DRRA +L  VLD
Sbjct: 1410 LVSRRDIYRLDAEV--RRRVDA-DRRAAILAAVLD 1441


>tr|B6PCB9|B6PCB9_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_247419 PE=4 SV=1
          Length = 108

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
 Frame = -1

Query: 352 ASPCKDHHRAVPL*MEADCAPLHIDHQ------EPFCAHIHWGHPHVSEMHPIQ--DPAR 197
           ASPC   H   P    + C P+H  H          C  IH  HPH S   PI    P  
Sbjct: 11  ASPCNPIHPTHP--HASPCIPIHPTHSCTLHPHASLCIPIHPTHPHASPCIPIHPTHPYA 68

Query: 196 KLSCPMH----QASAC 161
            L  P+H     AS C
Sbjct: 69  SLCNPIHPTHPHASPC 84


>tr|B6LC56|B6LC56_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_68766 PE=4 SV=1
          Length = 5358

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 262  RRVPDDLYAVERSLPPSKGALLYDD-LYREMPYQREALYSSR 384
            RR+P DLY VE +  P  G    DD ++R + YQR   Y  R
Sbjct: 3059 RRLPWDLYVVEHTYKPQAGLRQVDDGMFRSVEYQRPYQYLRR 3100