BP918212
Clone id YMU001_000110_G11
Library
Length 496
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TCATTCCCAAAAAACTTTGAATTGGATTGCGCCAAAACAAAGGGCGTCTTCAACTGAAGC
AATGAGACTTAGCTTCCCAAATGCAAAGCTTCTATCAGATTTACAGTAGACGGTCCAGTG
AGATCGTGTCTGCTCGCCTTATGCAATTAATCAAACATAACTATCTGCCTCGTGATCCCC
AAAAGACAAACAATAGCCAGGAAATGACTGGCCATAGCCTTAACTTAAATCGATACGAAA
CAACAATCATGTTATATGTACAAGCCACAGTCGCCTTGACCATCATTGGTCATTTTGCAA
TCATTACATTTACAATTTGCTGACACAAGCCAATTGACGTCCTTGGCCCCAGCACCTCGT
ATCCACAGTTGCTGAGCAATATTCGACCTTCTAGCCGTGAGGTAGTCCCCTGAATTGCAC
CATGAGCCATATGGTCTCGAGCAAACCCACGCAGGCAGACGGTCATGCCGATACACCTCA
ACTTAAATGTATCTCT
■■Homology search results ■■ -
sp_hit_id P09290
Definition sp|P09290|UL20_VZVD Gene 39 membrane protein OS=Varicella-zoster virus (strain Dumas)
Align length 50
Score (bit) 29.6
E-value 7.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918212|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G11.
(496 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P09290|UL20_VZVD Gene 39 membrane protein OS=Varicella-zoster... 30 7.9

>sp|P09290|UL20_VZVD Gene 39 membrane protein OS=Varicella-zoster
virus (strain Dumas) GN=39 PE=3 SV=1
Length = 240

Score = 29.6 bits (65), Expect = 7.9
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3

Query: 240 TTIMLYVQATVALTIIGHFAIITFTIC*HKPI--DVLGPSTSYPQLLSNI 383
T ML A + LTI+ HF +I +C ++ I D+L STS LL I
Sbjct: 100 TRCMLLFTAGLLLTILHHFRLIIMLLCVYRNIRSDLLPLSTSQQLLLGII 149


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918212|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G11.
(496 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******