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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918186
Clone id YMU001_000110_E07
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCCAGACGATGAGGTCTCCTACACCTCCATGCCGTTGGTTTCCCCCAATCATCACCATCG
ACACCATCCCCATTCTGCCTCAATGATGACCTCGCTTGATCGTCTCCAATTTTCCAAAGG
TATGCTTAATACTACTCCTCTCCCTTCCTCATCTTCGTCATTGGTGAACCTTATGGTCGC
GGCCACGGCAGAGGAAGGTGAGCCCGCATCTGTAGTGCTAGGGCTTGATTGCAGGTTAAC
AAATGGTAGGCCTCTGGCAAAATGTGAGGAAGGTGATGCAGCTGTGAAGATGAAGGAGCC
GCTTGGCATGGATGGAAATTGTATCTGGCAAGGAGCCTTGGAAGGTCAAGAGGATGTTTT
ACTGCGAAGCAAGCAAATGGCTATGGAGGGCCAAAGAAACCCGCTTGCTATGGAGCTTCA
AAGAAGCGAGGATTTATATAGAAGCAAGCAGATAGCTGCAGAAGATGAAAAAAACCAACA
ATTCAATGCGGAGGGCCAACATAGCAAGCAACTC
■■Homology search results ■■ -
sp_hit_id A4XTN0
Definition sp|A4XTN0|DNAE2_PSEMY Error-prone DNA polymerase OS=Pseudomonas mendocina (strain ymp)
Align length 69
Score (bit) 33.5
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918186|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_E07.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4XTN0|DNAE2_PSEMY Error-prone DNA polymerase OS=Pseudomonas ...    33   0.60 
sp|Q8NHY6|ZFP28_HUMAN Zinc finger protein 28 homolog OS=Homo sap...    32   1.7  
sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA OS=Dic...    31   3.0  
sp|Q05640|HMEN_ARTSF Homeobox protein engrailed OS=Artemia sanfr...    31   3.0  
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=...    31   3.9  
sp|Q09472|EP300_HUMAN Histone acetyltransferase p300 OS=Homo sap...    30   5.0  
sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2      30   5.1  
sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Ar...    30   6.7  
sp|Q3U3D7|T131L_MOUSE Transmembrane protein 131-like OS=Mus musc...    30   6.7  
sp|Q48D33|EFG_PSE14 Elongation factor G OS=Pseudomonas syringae ...    30   6.7  
sp|Q5K7L2|DBP9_CRYNE ATP-dependent RNA helicase DBP9 OS=Cryptoco...    30   6.7  
sp|Q8Y1K9|APAH_RALSO Bis(5'-nucleosyl)-tetraphosphatase, symmetr...    30   6.7  
sp|Q5AQJ2|LCMT1_EMENI Leucine carboxyl methyltransferase 1 OS=Em...    30   8.5  

>sp|A4XTN0|DNAE2_PSEMY Error-prone DNA polymerase OS=Pseudomonas
            mendocina (strain ymp) GN=dnaE2 PE=3 SV=1
          Length = 1026

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +2

Query: 185  TAEEGEPASVVLGLDCRLTNGRPLAKCEEGDAAVKMKEPLGMDGNCIWQGALEGQEDVLL 364
            T E G P SV       L  GR   +   G   V +++  GM    +W    E Q  VLL
Sbjct: 929  TVEHGRPVSVA-----GLVIGRQRPQTASGVIFVTLEDEFGMVNVVVWHDLAERQRRVLL 983

Query: 365  RSKQMAMEG 391
            +S+ + ++G
Sbjct: 984  QSRLLRIDG 992


>sp|Q8NHY6|ZFP28_HUMAN Zinc finger protein 28 homolog OS=Homo
           sapiens GN=ZFP28 PE=1 SV=1
          Length = 868

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 327 GKEPWKVKRMF---YCEASKWLWRAKETRLLWSFKEARI 434
           GKEPW VKR     +C   K +W+ KE  L   F E ++
Sbjct: 158 GKEPWTVKRKMTRAWCPDLKAVWKIKELPLKKDFCEGKL 196


>sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA
           OS=Dictyostelium discoideum GN=pakA PE=1 SV=1
          Length = 1197

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +2

Query: 347 QEDVLLRSKQMAMEGQRNPLAMELQRSEDLYRSKQIAAEDEKNQQFNAEGQHSKQ 511
           +ED + R ++   E QRN     L+R ++L R KQI  E+E+ ++  ++ Q S+Q
Sbjct: 451 EEDRIKREEEEEEEEQRN----YLRRLKELERIKQIEEEEEEERERQSQLQSSQQ 501


>sp|Q05640|HMEN_ARTSF Homeobox protein engrailed OS=Artemia
           sanfranciscana PE=2 SV=1
          Length = 349

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 365 RSKQMAMEGQRNPLAMELQRSEDLYRSKQIAAEDEKNQQFNA 490
           R+K     GQ+NPLA++L  ++ LY    I  ED+++ + ++
Sbjct: 301 RAKLKKSSGQKNPLALQLM-AQGLYNHSTIPTEDDEDDEISS 341


>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens
           GN=TPRXL PE=2 SV=1
          Length = 257

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 363 SKTSS*PSKAPCQIQFPSMPSGSFIFTAASPSSHFARGLPFVNLQSSPSTTDAGSPSSA 187
           S +SS  S +P      S PS S   +++SPSS  +      +  SS S++ + SPSS+
Sbjct: 73  SPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSS 131


>sp|Q09472|EP300_HUMAN Histone acetyltransferase p300 OS=Homo sapiens
            GN=EP300 PE=1 SV=2
          Length = 2414

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -3

Query: 338  RLLARYNFHPCQAAPSSSQLHHLPHILPEAYHLL--TCNQALALQMRAHLPLPWPRP*GS 165
            RLL +    P Q  P S Q H LP+   ++ HL       +L+ Q+R+  P+P PRP   
Sbjct: 2263 RLLQQQMGSPVQPNPMSPQQHMLPN-QAQSPHLQGQQIPNSLSNQVRSPQPVPSPRPQSQ 2321

Query: 164  P 162
            P
Sbjct: 2322 P 2322


>sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2
          Length = 2541

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = -2

Query: 396  LWPSIAICLLRSKTSS*PSKAPCQIQFPSMPSGSFIFTAASPSSHFARGLPFVNLQSSPS 217
            +W S    ++ S  SS            S+PS  +IF+  +  S    G P  +L SS +
Sbjct: 1899 IWSSTPTIIMSSSPSSASITPVFSTTIHSVPSSPYIFSTENVGSASITGFP--SLSSSAT 1956

Query: 216  TTDAGSPSSAVAATIRFT 163
            T+ + + SS   A    T
Sbjct: 1957 TSTSSTSSSLTTALTEIT 1974


>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2
           OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1
          Length = 687

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 210 DAGSPSSAVAATIRFTNDEDEEGRGVVLSIPL 115
           ++G P   V A+  F+NDEDE+ RG   S+ L
Sbjct: 402 ESGDPVVVVDASSTFSNDEDEDDRGTHGSVSL 433


>sp|Q3U3D7|T131L_MOUSE Transmembrane protein 131-like OS=Mus musculus
            GN=Kiaa0922 PE=2 SV=1
          Length = 1597

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 402  GFLWPSIAICLLRSKTSS*PSKAPCQIQFP-SMPSGSFIFTAASPSSHF 259
            G LWPS  +CL  S      + AP   Q P S+P  SFI  +AS    F
Sbjct: 1395 GGLWPSQPVCLTSSFNCPVENGAPGVSQEPTSIPDSSFIDWSASCEGQF 1443


>sp|Q48D33|EFG_PSE14 Elongation factor G OS=Pseudomonas syringae pv.
           phaseolicola (strain 1448A / Race 6) GN=fusA PE=3 SV=1
          Length = 701

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +2

Query: 272 GDAAVKMKEPLGMDGNCIWQGALEGQEDVLLRSKQMAMEGQRNPLAMELQRSEDLYRSKQ 451
           G   V ++  +G + N   Q  L   E V        M  +R P+  ELQ   D +RS  
Sbjct: 164 GHTPVPIQLAIGAEDNFQGQIDLMSMEAVYWNDADKGMVPRREPIPAELQELADEWRSNM 223

Query: 452 IAAEDEKNQQ 481
           + A  E +++
Sbjct: 224 VEAAAEASEE 233
tr_hit_id Q3ME01
Definition tr|Q3ME01|Q3ME01_ANAVT Putative uncharacterized protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
Align length 78
Score (bit) 38.1
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918186|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_E07.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3ME01|Q3ME01_ANAVT Putative uncharacterized protein OS=Anaba...    38   0.25 
tr|A7BW26|A7BW26_9GAMM Putative uncharacterized protein OS=Beggi...    36   0.98 
tr|B5YP73|B5YP73_THAPS Predicted protein OS=Thalassiosira pseudo...    36   1.3  
tr|A2QQX8|A2QQX8_ASPNC Function: MPP of N. crassa is a mitochond...    35   1.7  
tr|Q15Z17|Q15Z17_PSEA6 Putative uncharacterized protein OS=Pseud...    35   2.9  
tr|B0ZBI8|B0ZBI8_MAIZE Ring-H2 zinc finger protein OS=Zea mays G...    34   3.7  
tr|B6KPI3|B6KPI3_TOXGO MORN repeat-containing protein OS=Toxopla...    34   3.7  
tr|A0LCY8|A0LCY8_MAGSM Putative uncharacterized protein OS=Magne...    34   4.9  
tr|Q8W1C6|Q8W1C6_MAIZE Ring-H2 zinc finger protein OS=Zea mays G...    34   4.9  
tr|Q8L6T7|Q8L6T7_MAIZE Ring-H2 zinc finger protein OS=Zea mays G...    34   4.9  
tr|Q5GAS1|Q5GAS1_MAIZE Znf OS=Zea mays GN=znf PE=4 SV=1                34   4.9  
tr|B8LCT3|B8LCT3_THAPS Predicted protein OS=Thalassiosira pseudo...    34   4.9  
tr|A0EVJ5|A0EVJ5_MAIZE Ring-H2 zinc finger protein OS=Zea mays G...    34   4.9  
tr|A0EVH7|A0EVH7_MAIZE Ring-H2 zinc finger protein OS=Zea mays G...    34   4.9  
tr|A0EVG4|A0EVG4_MAIZE Ring-H2 zinc finger protein OS=Zea mays G...    34   4.9  
tr|A0EVF6|A0EVF6_MAIZE Ring-H2 zinc finger protein OS=Zea mays G...    34   4.9  
tr|B4QDD7|B4QDD7_DROSI GD25829 OS=Drosophila simulans GN=GD25829...    34   4.9  
tr|Q0CGD0|Q0CGD0_ASPTN Putative uncharacterized protein OS=Asper...    34   4.9  
tr|A7EST6|A7EST6_SCLS1 Putative uncharacterized protein OS=Scler...    34   4.9  
tr|A6S917|A6S917_BOTFB Putative uncharacterized protein OS=Botry...    34   4.9  
tr|Q5AFI4|Q5AFI4_CANAL Putative uncharacterized protein (Putativ...    33   6.4  
tr|B7PB78|B7PB78_IXOSC Putative uncharacterized protein OS=Ixode...    33   8.3  

>tr|Q3ME01|Q3ME01_ANAVT Putative uncharacterized protein OS=Anabaena
           variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1161
           PE=4 SV=1
          Length = 642

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
 Frame = +3

Query: 300 RLAWMEIVSGKEPWKVKRM-FYCEASKWLWRAKETRLLWSFKEARIYIEASR*LQK---- 464
           R+AW E     EPWKV R+  YC     LW A+ T L+   K   I    ++   K    
Sbjct: 359 RIAWQEGEGKSEPWKVNRLILYCSVDTRLWTAEGTNLVREEKAEEIAKAIAQTKAKGKLN 418

Query: 465 ------MKKTNNSMRRAN 500
                 +K+ N+S+ R N
Sbjct: 419 DKQQAHIKRKNSSLARIN 436


>tr|A7BW26|A7BW26_9GAMM Putative uncharacterized protein
           OS=Beggiatoa sp. PS GN=BGP_0941 PE=4 SV=1
          Length = 295

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +2

Query: 278 AAVKMKEPLGMDGNCIWQGALEGQEDVLLRSKQMAMEGQRNPLAMELQRSEDLYRSKQIA 457
           AA+K  E     G  I    +E +++VL   +Q+A+  Q+  +++E   S D+     + 
Sbjct: 67  AALKAMEIDSRKGKTINAYIVESEDEVLFYQQQIALFRQQKAVSIEKNPSHDMETDVVVE 126

Query: 458 AEDEKNQQFNAEGQHSK 508
           + DE+ QQ  A  +H K
Sbjct: 127 SRDEEPQQTPAPKKHQK 143


>tr|B5YP73|B5YP73_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPS_6678 PE=4 SV=1
          Length = 1007

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 393 WPSIAICLLRSKTSS*PSKAPCQIQFPSMPSGSFIFTAASPSSHFARGLPFV--NLQSSP 220
           W  I  C++    SS PS    ++   ++ S S I  ++SPS+  + G+P +  ++   P
Sbjct: 550 WKVIGSCIVTITPSSMPSNTLSEVPSVAVSSKSSIMESSSPSAQSSHGVPSLQPSIDEPP 609

Query: 219 STTDAGSPSSAVAAT 175
           S     SPS    +T
Sbjct: 610 SRVPTSSPSLKFTST 624


>tr|A2QQX8|A2QQX8_ASPNC Function: MPP of N. crassa is a
           mitochondrial processing peptidase OS=Aspergillus niger
           (strain CBS 513.88 / FGSC A1513) GN=An08g04080 PE=3 SV=1
          Length = 583

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 372 LLRSKTSS*PSKAPCQIQFPSMPSGSFIFTAASPSSHFARGLPFV-NLQSSPSTTDAGSP 196
           L  SK+++   + P   QF   PS +   TAASP S F   LPF+ NL +S S   A SP
Sbjct: 265 LSESKSAAEEGQVPTVPQFT--PSSTTTTTAASPKSGFLSKLPFLKNLSNSGSQNSAASP 322


>tr|Q15Z17|Q15Z17_PSEA6 Putative uncharacterized protein
           OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
           GN=Patl_0340 PE=4 SV=1
          Length = 458

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
 Frame = -2

Query: 366 RSKTSS*PSKAPCQIQFPSMPSGSF-IFTAASPSS----HFARGLPFVNLQSSPS---TT 211
           + K+SS PS AP     P+  + S  + T A+P +    H  +  P   L+S  +   TT
Sbjct: 28  KDKSSSAPSNAPSS---PATSTASTAVITPAAPKAESADHGTKKNPTAPLKSDNNVKKTT 84

Query: 210 DAGSPSSAVAATIRFTNDEDEEGR--GVVLSIPLENWRRSSEVIIEAEWGWCRW 55
            A   S   +AT    N ++++    GV+  + + N      ++  A WGW +W
Sbjct: 85  SASDSSGTPSATSPTKNQKNQKPAKTGVLWFVTIVNLLILLLIVAGAYWGWTQW 138


>tr|B0ZBI8|B0ZBI8_MAIZE Ring-H2 zinc finger protein OS=Zea mays
           GN=znf1 PE=4 SV=1
          Length = 298

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 26/61 (42%), Positives = 28/61 (45%)
 Frame = -2

Query: 315 PSMPSGSFIFTAASPSSHFARGLPFVNLQSSPSTTDAGSPSSAVAATIRFTNDEDEEGRG 136
           PS PS  F+F AASP     RGLP   LQS P T   GSP    A        E  +G  
Sbjct: 53  PSSPSSRFLFVAASPLPQ--RGLPASVLQSLPVTV-YGSPGGKDALECAVCLSEVGDGEK 109

Query: 135 V 133
           V
Sbjct: 110 V 110


>tr|B6KPI3|B6KPI3_TOXGO MORN repeat-containing protein OS=Toxoplasma
            gondii ME49 GN=TGME49_119880 PE=4 SV=1
          Length = 1262

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = -2

Query: 315  PSMPSGSFIFTAASPSSHFARGLPFVNLQSSPSTTDAGSPSSAVAATIRFTNDEDEEGRG 136
            P+ PS SF      P   F+   PF +  SSPS + + SPSS  A+ +       EEGRG
Sbjct: 876  PASPSSSFC-----PFPSFSPFPPFSSFSSSPSVSSSSSPSSFPASLV-------EEGRG 923


>tr|A0LCY8|A0LCY8_MAGSM Putative uncharacterized protein
           OS=Magnetococcus sp. (strain MC-1) GN=Mmc1_3345 PE=4
           SV=1
          Length = 159

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
 Frame = +2

Query: 236 LTNGRPLAKCEEG---DAAVKMKEPLGMDGNCIWQGALEGQEDVLLRSKQMAMEGQR--- 397
           L+ GR + K E+G   D A +MK   G++   I +G   G+E    RSK +A EG+R   
Sbjct: 7   LSVGRGMPKHEKGLFDDYAGRMKRYGGLELVEIAEGQRTGKESPATRSKAIADEGERILE 66

Query: 398 ---NPLAMELQRSEDLYRSKQIAAE 463
                L M L R   L  S+ +AA+
Sbjct: 67  KMDKRLWMALDRGGKLLDSETLAAQ 91


>tr|Q8W1C6|Q8W1C6_MAIZE Ring-H2 zinc finger protein OS=Zea mays
           GN=znf PE=4 SV=1
          Length = 304

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 22/40 (55%), Positives = 23/40 (57%)
 Frame = -2

Query: 315 PSMPSGSFIFTAASPSSHFARGLPFVNLQSSPSTTDAGSP 196
           PS PS  F+F AASP     RGLP   LQS P T   GSP
Sbjct: 53  PSSPSSRFLFVAASPLPQ--RGLPASVLQSLPVTV-YGSP 89


>tr|Q8L6T7|Q8L6T7_MAIZE Ring-H2 zinc finger protein OS=Zea mays
           GN=znf1 PE=4 SV=1
          Length = 304

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 22/40 (55%), Positives = 23/40 (57%)
 Frame = -2

Query: 315 PSMPSGSFIFTAASPSSHFARGLPFVNLQSSPSTTDAGSP 196
           PS PS  F+F AASP     RGLP   LQS P T   GSP
Sbjct: 53  PSSPSSRFLFVAASPLPQ--RGLPASVLQSLPVTV-YGSP 89