BP918184
Clone id YMU001_000110_E05
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAGAAGTTTGTAGGATCAGGCATTTCCATGGTACCAAACCTTGAATTTGGTCATCAGAAG
TTTAACTGCAAATCAGCAACAATGAGTCCTTTTACTGTTACCCTGATAAACAGTCAGGGC
CACACATTTCAAGCACCAGTTTGGTGGGCGTTCTAAAAAATGGCAGATGAACATGTCATC
ATTATATCACAAAGCTTCAAGCACCGACATCTCCCATTTGAAAAGCAATTGCAGACTCCA
TATAAGCATCTTCAAGGCATAGGAAGGACTCTGCAACACAACATACCAATGCTGAACTGC
TAAAGTTAATCTTCCAATGCTCTACGTTTGATACACAAACAAAATGGTTCTCCATCCATG
TCGATTGCAGGTAGATTCAAGACCTGTATCATTCCATTAGCTTGCCTATCATAGCCCTGT
CTGCACATGTTCATTCCATACAGAACAACATTTTCTGTATAATGCGCAT
■■Homology search results ■■ -
sp_hit_id Q62635
Definition sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus
Align length 29
Score (bit) 30.8
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918184|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_E05.
(469 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Mu... 31 3.1
sp|A4IR72|URK_GEOTN Uridine kinase OS=Geobacillus thermodenitrif... 31 3.1
sp|Q5KWV3|URK_GEOKA Uridine kinase OS=Geobacillus kaustophilus G... 31 3.1
sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2 30 4.0
sp|P12850|GROA_MOUSE Growth-regulated alpha protein OS=Mus muscu... 30 4.0
sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36 OS=Ara... 30 5.2
sp|A2A6H3|FBX47_MOUSE F-box only protein 47 OS=Mus musculus GN=F... 30 5.3
sp|P09341|GROA_HUMAN Growth-regulated alpha protein OS=Homo sapi... 30 6.8
sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1 29 8.9
sp|O61363|HCYG_OCTDO Hemocyanin G-type, units Oda to Odg OS=Octo... 29 9.1
sp|P12659|HCYA_OCTDO Hemocyanin A-type, units Ode to Odg (Fragme... 29 9.1

>sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Muc2
PE=1 SV=1
Length = 1513

Score = 30.8 bits (68), Expect = 3.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3

Query: 251 RCLYGVCNCFSNGRCRCLKLCDIMMTCSS 165
RC Y CNC +N C C L C++
Sbjct: 610 RCKYDTCNCQNNEDCMCAALSSYARACAA 638


>sp|A4IR72|URK_GEOTN Uridine kinase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=udk PE=3 SV=1
Length = 211

Score = 30.8 bits (68), Expect = 3.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +1

Query: 166 DEHVIIISQSFKHR---HLPFEKQLQTPYKH 249
D ++++ Q F ++ HLPFE++L+T Y H
Sbjct: 31 DRSILVLEQDFYYKDQSHLPFEERLKTNYDH 61


>sp|Q5KWV3|URK_GEOKA Uridine kinase OS=Geobacillus kaustophilus
GN=udk PE=3 SV=1
Length = 211

Score = 30.8 bits (68), Expect = 3.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +1

Query: 166 DEHVIIISQSFKHR---HLPFEKQLQTPYKH 249
D ++++ Q F ++ HLPFE++L+T Y H
Sbjct: 31 DRSILVLEQDFYYKDQSHLPFEERLKTNYDH 61


>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2
Length = 5179

Score = 30.4 bits (67), Expect = 4.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3

Query: 251 RCLYGVCNCFSNGRCRCLKLCDIMMTCSS 165
RC Y CNC +N C C L C++
Sbjct: 613 RCKYDTCNCQNNEDCLCAALSSYARACTA 641


>sp|P12850|GROA_MOUSE Growth-regulated alpha protein OS=Mus musculus
GN=Cxcl1 PE=1 SV=1
Length = 96

Score = 30.4 bits (67), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3

Query: 66 LQISNNESFYCYPDKQSGPHISSTSLVGVLKNGR*TC 176
+ + N +S P SGPH + T ++ LKNGR C
Sbjct: 42 IHLKNIQSLKVLP---SGPHCTQTEVIATLKNGREAC 75


>sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36
OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1
Length = 366

Score = 30.0 bits (66), Expect = 5.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3

Query: 264 KDSATQHTNAELLKLIFQCSTFDTQTKWFSIHVDCR*IQDLYHSISLPIIALSAHVHSIQ 443
K+ A ++ ++ + +F C + K H D + +QDL I+L + L+ + SI+
Sbjct: 100 KNLAAENRELQVRRFMFDC----VEGKMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIK 155

Query: 444 NN 449
N
Sbjct: 156 EN 157


>sp|A2A6H3|FBX47_MOUSE F-box only protein 47 OS=Mus musculus
GN=Fbxo47 PE=3 SV=2
Length = 451

Score = 30.0 bits (66), Expect = 5.3
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = +1

Query: 181 IISQSFKHRHLPFEKQLQTPYKHLQGIGRTLQHNIPMLNC*S*SSNALRLIHKQNGSPSM 360
++ Q+F LP K+ +H + +G + +L + L+ IHK S
Sbjct: 91 LLLQNFHDLDLPGTKEETALLEHYRALGLLFKRCTLLLP----TKERLKYIHKILSEVSC 146

Query: 361 SIAGRFKTCIIPLACLS*PCLHMFI 435
+F C +PL CL C MF+
Sbjct: 147 F---KFSGCSVPLQCLGLSCYGMFL 168


>sp|P09341|GROA_HUMAN Growth-regulated alpha protein OS=Homo sapiens
GN=CXCL1 PE=1 SV=1
Length = 107

Score = 29.6 bits (65), Expect = 6.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3

Query: 108 KQSGPHISSTSLVGVLKNGR*TC 176
K GPH + T ++ LKNGR C
Sbjct: 63 KSPGPHCAQTEVIATLKNGRKAC 85


>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1
Length = 5147

Score = 29.3 bits (64), Expect = 8.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3

Query: 248 CLYGVCNCFSNGRCRCL 198
CLY C C S G C CL
Sbjct: 1229 CLYDACGCDSGGDCECL 1245


>sp|O61363|HCYG_OCTDO Hemocyanin G-type, units Oda to Odg OS=Octopus
dofleini GN=ODHCY PE=1 SV=1
Length = 2896

Score = 29.3 bits (64), Expect = 9.1
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = +1

Query: 49 GHQKFNCKSATMSPFTVTLINSQGHTFQAPVWWAF*KMADEHVIIISQSFKHRHLPFEK- 225
GHQK+ S S F P+++ M D I +HRHLPF+K
Sbjct: 2271 GHQKYAMSSLVYSSFD-------------PIFYVHHSMVDRLWAIWQALQEHRHLPFDKA 2317

Query: 226 -----QLQTPYK 246
QL P K
Sbjct: 2318 YCALEQLSFPMK 2329


tr_hit_id Q4QK22
Definition tr|Q4QK22|Q4QK22_HAEI8 Putative uncharacterized protein OS=Haemophilus influenzae (strain 86-028NP)
Align length 86
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918184|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_E05.
(469 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4QK22|Q4QK22_HAEI8 Putative uncharacterized protein OS=Haemo... 33 5.5
tr|A4P0H6|A4P0H6_HAEIN Putative uncharacterized protein OS=Haemo... 33 5.5
tr|A4NUH7|A4NUH7_HAEIN Putative uncharacterized protein OS=Haemo... 33 5.5
tr|A4N467|A4N467_HAEIN Putative uncharacterized protein OS=Haemo... 33 5.5
tr|B6MMH4|B6MMH4_BRAFL Putative uncharacterized protein OS=Branc... 33 5.5
tr|A4NKW6|A4NKW6_HAEIN Putative uncharacterized protein OS=Haemo... 33 7.1
tr|A9RXL5|A9RXL5_PHYPA Predicted protein OS=Physcomitrella paten... 33 7.1
tr|B4HL31|B4HL31_DROSE GM26325 OS=Drosophila sechellia GN=GM2632... 33 7.1

>tr|Q4QK22|Q4QK22_HAEI8 Putative uncharacterized protein
OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI1863
PE=4 SV=1
Length = 142

Score = 33.5 bits (75), Expect = 5.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +1

Query: 7 FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
++ ++ +PN E Q ++C K + P + IN G T + + K+
Sbjct: 54 WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 111

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
+DEH++II +F +H PF ++ TP
Sbjct: 112 SDEHIVII--AFSPQHEPFPREWDTP 135


>tr|A4P0H6|A4P0H6_HAEIN Putative uncharacterized protein
OS=Haemophilus influenzae 22.4-21 GN=CGSHiR3021_00367
PE=4 SV=1
Length = 118

Score = 33.5 bits (75), Expect = 5.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +1

Query: 7 FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
++ ++ +PN E Q ++C K + P + IN G T + + K+
Sbjct: 30 WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 87

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
+DEH++II +F +H PF ++ TP
Sbjct: 88 SDEHIVII--AFSPQHEPFPREWDTP 111


>tr|A4NUH7|A4NUH7_HAEIN Putative uncharacterized protein
OS=Haemophilus influenzae PittII GN=CGSHiII_07068 PE=4
SV=1
Length = 142

Score = 33.5 bits (75), Expect = 5.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +1

Query: 7 FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
++ ++ +PN E Q ++C K + P + IN G T + + K+
Sbjct: 54 WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 111

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
+DEH++II +F +H PF ++ TP
Sbjct: 112 SDEHIVII--AFSPQHEPFPREWDTP 135


>tr|A4N467|A4N467_HAEIN Putative uncharacterized protein
OS=Haemophilus influenzae R3021 GN=CGSHi22421_02991 PE=4
SV=1
Length = 142

Score = 33.5 bits (75), Expect = 5.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +1

Query: 7 FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
++ ++ +PN E Q ++C K + P + IN G T + + K+
Sbjct: 54 WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 111

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
+DEH++II +F +H PF ++ TP
Sbjct: 112 SDEHIVII--AFSPQHEPFPREWDTP 135


>tr|B6MMH4|B6MMH4_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_84281 PE=4 SV=1
Length = 1146

Score = 33.5 bits (75), Expect = 5.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1

Query: 376 IYLQSTWMENHFVCVSNVEHWKINFSSSA 290
I L TW EN C +N+E W++ FS+ A
Sbjct: 78 ISLAGTWHENAPTCTANIEKWRVVFSAQA 106


>tr|A4NKW6|A4NKW6_HAEIN Putative uncharacterized protein
OS=Haemophilus influenzae PittHH GN=CGSHiHH_01107 PE=4
SV=1
Length = 142

Score = 33.1 bits (74), Expect = 7.1
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +1

Query: 7 FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
++ ++ +PN E Q ++C K + P + IN G T + + K+
Sbjct: 54 WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 111

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
+DEH++II +F +H PF ++ TP
Sbjct: 112 SDEHIVII--AFSPQHEPFPRKWDTP 135


>tr|A9RXL5|A9RXL5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_206630 PE=4 SV=1
Length = 955

Score = 33.1 bits (74), Expect = 7.1
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1

Query: 367 QSTWMENHFVCVSNVEHWKINFSSSALVCCVAESFLCLEDAYMESAIAFQ 218
QS W E+H C S V HW +N A V VAE L + + + A Q
Sbjct: 736 QSKW-ESHLQCNSKVVHWDLNRPIKAAVAAVAEHLAGLVETQLTYSHAHQ 784


>tr|B4HL31|B4HL31_DROSE GM26325 OS=Drosophila sechellia GN=GM26325
PE=4 SV=1
Length = 267

Score = 33.1 bits (74), Expect = 7.1
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +1

Query: 106 INSQGHTFQAPVWWAF*KMADEHVIIISQSFKHRHLPFEKQLQTPYKHLQGIGRTLQHNI 285
INS+ F+ AF K DE I+ ++ HR FEKQ+ K +QG +L+ I
Sbjct: 204 INSEEQQFKKNALAAF-KKYDEDRAILDKALAHRIAEFEKQIPNEKKSVQGRSYSLEKRI 262

Query: 286 PMLN 297
N
Sbjct: 263 GTRN 266