BP918177 |
Clone id |
YMU001_000110_D10 |
Library |
YMU01 |
Length |
560 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000110_D10. |
Accession |
BP918177 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTCGACCAGGTTGAGCTTTTGCGATCGTCTTAAATCAAGCATTTCAGCAGCTAATGGTAC AGTCTCTACCCACCTGGTCAAAAAAGGTACTATCAAAAAATCATGGGCAGTGTAAGGCAC TAGCCAAGGCACAGCAACCAACACTGCCACAAACTTCACAGTAGTCTGAGATGTGAAGCG GAAGACTCTATCCTCAAAGGCAAGGTCTGCTTTCACCTCCTCCTCATCTTCAAAAAATCG AAAGAACAACTCTTTCATATTCCTGCCCATGCCACGCTCTGGCAACTTGGGAGGTGCGCG AGGCACCCCTCCTTTTTCCCAATCTGACTCATCAAAATACCAGCCGCTATCTTTCCCACC CACATATTCACTGTAATCGCCCCAGCTGTCATCGAGCCAGTCCTCCCAGTTTTTATTATC AGGATCTCGACCAAATTCTTGAGATTCCCGCAGTTCATTCCGGGCTTTAACTCGCTGCTG CCAGGCCTTGAAACTGGCATCATCAGCAAGCATTCTGTCGATATCATCCTTGCACCAGTC ATCACCAGTACCCTTTTTAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O43390 |
Definition |
sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens |
Align length |
64 |
Score (bit) |
35.8 |
E-value |
0.15 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SZX0 |
Definition |
tr|A9SZX0|A9SZX0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
176 |
Score (bit) |
190.0 |
E-value |
4.0e-47 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918177|Adiantum capillus-veneris mRNA, clone: YMU001_000110_D10. (560 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SZX0|A9SZX0_PHYPA Predicted protein OS=Physcomitrella paten... 190 4e-47 tr|A9SZ94|A9SZ94_PHYPA Predicted protein (Fragment) OS=Physcomit... 177 3e-43 tr|A7PFE3|A7PFE3_VITVI Chromosome chr11 scaffold_14, whole genom... 102 1e-20 tr|A5C697|A5C697_VITVI Putative uncharacterized protein OS=Vitis... 102 1e-20 tr|Q8RXP7|Q8RXP7_ARATH Putative uncharacterized protein At4g3104... 97 6e-19 tr|Q8LBP9|Q8LBP9_ARATH Putative uncharacterized protein OS=Arabi... 97 6e-19 tr|Q681Z5|Q681Z5_ARATH Putative uncharacterized protein At4g3104... 97 6e-19 tr|Q67Z96|Q67Z96_ARATH Putative uncharacterized protein At4g3104... 97 6e-19 tr|Q67YG9|Q67YG9_ARATH Putative uncharacterized protein At4g3104... 97 6e-19 tr|Q67YB4|Q67YB4_ARATH Putative uncharacterized protein At4g3104... 97 6e-19 tr|O65546|O65546_ARATH Putative uncharacterized protein F6I18.50... 97 6e-19 tr|Q7F1V0|Q7F1V0_ORYSJ Os08g0224300 protein OS=Oryza sativa subs... 95 3e-18 tr|B8BBZ2|B8BBZ2_ORYSI Putative uncharacterized protein OS=Oryza... 95 3e-18 tr|B7F9R4|B7F9R4_ORYSJ cDNA, clone: J090072E23, full insert sequ... 95 3e-18 tr|B6SXJ2|B6SXJ2_MAIZE Putative uncharacterized protein OS=Zea m... 92 1e-17 tr|B4FK10|B4FK10_MAIZE Putative uncharacterized protein OS=Zea m... 92 1e-17 tr|Q9JNK5|Q9JNK5_STRPY Sic1.186 OS=Streptococcus pyogenes GN=sic... 39 0.15 tr|A5K8G7|A5K8G7_PLAVI Tryptophan-rich antigen (Pv-fam-a) OS=Pla... 39 0.15 tr|Q99KG1|Q99KG1_MOUSE Hnrpr protein (Fragment) OS=Mus musculus ... 36 1.6 tr|Q8VHM5|Q8VHM5_MOUSE Heterogeneous nuclear ribonucleoprotein R... 36 1.6 tr|Q8BL32|Q8BL32_MOUSE Putative uncharacterized protein (Fragmen... 36 1.6 tr|Q811S1|Q811S1_RAT Heterogeneous nuclear ribonucleoprotein R O... 36 1.6 tr|Q566E4|Q566E4_RAT Heterogeneous nuclear ribonucleoprotein R O... 36 1.6 tr|Q3UZI0|Q3UZI0_MOUSE Putative uncharacterized protein (Fragmen... 36 1.6 tr|Q3UMT8|Q3UMT8_MOUSE Putative uncharacterized protein OS=Mus m... 36 1.6 tr|Q3UKV5|Q3UKV5_MOUSE Putative uncharacterized protein (Fragmen... 36 1.6 tr|Q3U8W9|Q3U8W9_MOUSE Putative uncharacterized protein OS=Mus m... 36 1.6 tr|B7GBY4|B7GBY4_PHATR Predicted protein OS=Phaeodactylum tricor... 36 1.6 tr|Q5R622|Q5R622_PONAB Putative uncharacterized protein DKFZp459... 36 1.6 tr|A3KMV6|A3KMV6_BOVIN HNRNPR protein OS=Bos taurus GN=HNRNPR PE... 36 1.6
>tr|A9SZX0|A9SZX0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_167344 PE=4 SV=1 Length = 726
Score = 190 bits (483), Expect = 4e-47 Identities = 90/176 (51%), Positives = 114/176 (64%) Frame = -3
Query: 528 DDIDRMLADDASFKAWQQRVKARNELRESQEFGRDPDNKNWEDWLDDSWGDYSEYVGGKD 349 D++D ML DDA F W+ R + R+ELR+ Q+ GRDPD K+WEDWLDDSW Y + + G+D Sbjct: 306 DEVDAMLEDDARFFRWKMRNEVRSELRDLQDSGRDPDGKDWEDWLDDSWNQYQDNLAGRD 365
Query: 348 SGWYFDESDWEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDRVFRFTS 169 GWY S+WEK GVPR P PERGM R +K EV DL FE+RVFRFTS Sbjct: 366 DGWYQASSNWEKDGVPRDAPSKPERGMKRTIKELFFRIFEPEEEVVDDLQFEERVFRFTS 425
Query: 168 QTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNLVE 1 +TT KF + HDF++VPFL +VE VPLAA++ D+R SQKL ++E Sbjct: 426 RTTAKFVGVLIIVPWITDFLVHDFVLVPFLDTYVEKVPLAAQVFDVRESQKLKMIE 481
>tr|A9SZ94|A9SZ94_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_43373 PE=4 SV=1 Length = 345
Score = 177 bits (450), Expect = 3e-43 Identities = 85/173 (49%), Positives = 111/173 (64%) Frame = -3
Query: 519 DRMLADDASFKAWQQRVKARNELRESQEFGRDPDNKNWEDWLDDSWGDYSEYVGGKDSGW 340 D ML +D F W+ + +A+N+LR+ Q G DPD+++WEDWLDDSW Y + + G+ GW Sbjct: 1 DEMLENDRRFFRWKIKNEAQNDLRDYQASGADPDSRDWEDWLDDSWNQYGDNLAGRMDGW 60
Query: 339 YFDESDWEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDRVFRFTSQTT 160 Y S+WEK GVPR PP PERGM R +K EV DL FE+RVF+FTSQTT Sbjct: 61 YEPSSNWEKDGVPRDPPSKPERGMKRTIKELLFRIFEPEDEVVDDLQFEERVFKFTSQTT 120
Query: 159 VKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNLVE 1 KF +T HD ++VPFL +VE VPLAA++LD+R SQKL ++E Sbjct: 121 AKFVGVLIFLPWITDFTIHDHVLVPFLQTYVEKVPLAAKILDVRESQKLKIIE 173
>tr|A7PFE3|A7PFE3_VITVI Chromosome chr11 scaffold_14, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017029001 PE=4 SV=1 Length = 415
Score = 102 bits (255), Expect = 1e-20 Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%) Frame = -3
Query: 510 LADDASFKAWQQRVKARNELRESQEFGRDPDNKNWEDWL----DDSWGDYSEYVGGKDSG 343 L++ F+AW++R +A ELRE+QE R+ + + WEDWL DS D S++V G +G Sbjct: 84 LSETQKFEAWKRRAEAILELREAQEDIRNQEGRRWEDWLVEGSTDSHSD-SDWVAGSHTG 142
Query: 342 WYFDESD--WEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDRVFRFTS 169 DE + GG+ +P++G +++ +L +EDRVFR+ S Sbjct: 143 ---DEGGDGGDLGGI------IPDKGFVESVRDLVLGREDD------ELLYEDRVFRYAS 187
Query: 168 QTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNLVE 1 + KF + HD++++PFL R+V+TVPLAA+MLD+RR QKL +V+ Sbjct: 188 FNSAKFLAVLLIIPWALDFVVHDYVLMPFLDRYVKTVPLAAKMLDVRRHQKLEMVK 243
>tr|A5C697|A5C697_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016264 PE=4 SV=1 Length = 277
Score = 102 bits (255), Expect = 1e-20 Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%) Frame = -3
Query: 510 LADDASFKAWQQRVKARNELRESQEFGRDPDNKNWEDWL----DDSWGDYSEYVGGKDSG 343 L++ F+AW++R +A ELRE+QE R+ + + WEDWL DS D S++V G +G Sbjct: 84 LSETQKFEAWKRRAEAILELREAQEDIRNQEGRRWEDWLVEGSTDSHSD-SDWVAGSHTG 142
Query: 342 WYFDESD--WEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDRVFRFTS 169 DE + GG+ +P++G +++ +L +EDRVFR+ S Sbjct: 143 ---DEGGDGGDLGGI------IPDKGFVESVRDLVLGREDD------ELLYEDRVFRYAS 187
Query: 168 QTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNLVE 1 + KF + HD++++PFL R+V+TVPLAA+MLD+RR QKL +V+ Sbjct: 188 FNSAKFLAVLLIIPWALDFVVHDYVLMPFLDRYVKTVPLAAKMLDVRRHQKLEMVK 243
>tr|Q8RXP7|Q8RXP7_ARATH Putative uncharacterized protein At4g31040 (Putative uncharacterized protein At4g31041) OS=Arabidopsis thaliana GN=At4g31041 PE=2 SV=1 Length = 438
Score = 97.1 bits (240), Expect = 6e-19 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 9/182 (4%) Frame = -3
Query: 519 DRMLADDASFKAWQQRVKARNELRESQEFGRDPD-----NKNWEDWLDDSWGDYSEY--- 364 D ++D+ F+ W++R +A ELRE QE D K WEDW+ DS + E Sbjct: 103 DDEMSDEEKFETWKRRAEAIVELREGQEEIGDSGVVADVTKKWEDWIVDSDDSFVESWTR 162
Query: 363 -VGGKDSGWYFDESDWEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDR 187 G D DE GG+ + M R+M + D+ +EDR Sbjct: 163 DSAGSDDNLELDELTIPDGGLVK---------MVRDMVLGAE---------EEDILYEDR 204
Query: 186 VFRFTSQTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNL 7 +FR+ S + KF + AHD+L++PFL R+V+TVPLAA+ LD+RR+QKL + Sbjct: 205 IFRYASSKSAKFLAVLILIPWALDFLAHDYLLMPFLDRYVKTVPLAAQTLDVRRNQKLEM 264
Query: 6 VE 1 V+ Sbjct: 265 VK 266
>tr|Q8LBP9|Q8LBP9_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 431
Score = 97.1 bits (240), Expect = 6e-19 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 9/182 (4%) Frame = -3
Query: 519 DRMLADDASFKAWQQRVKARNELRESQEFGRDPD-----NKNWEDWLDDSWGDYSEY--- 364 D ++D+ F+ W++R +A ELRE QE D K WEDW+ DS + E Sbjct: 96 DDEMSDEKKFETWKRRAEAIVELREGQEEIGDSGVVADVTKKWEDWIVDSDDSFVESWTR 155
Query: 363 -VGGKDSGWYFDESDWEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDR 187 G D DE GG+ + M R+M + D+ +EDR Sbjct: 156 DSAGSDDNLELDELTIPDGGLVK---------MVRDMVLGAE---------EEDILYEDR 197
Query: 186 VFRFTSQTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNL 7 +FR+ S + KF + AHD+L++PFL R+V+TVPLAA+ LD+RR+QKL + Sbjct: 198 IFRYASSKSAKFLAVLILIPWALDFLAHDYLLMPFLDRYVKTVPLAAQTLDVRRNQKLEM 257
Query: 6 VE 1 V+ Sbjct: 258 VK 259
>tr|Q681Z5|Q681Z5_ARATH Putative uncharacterized protein At4g31041 OS=Arabidopsis thaliana GN=At4g31041 PE=2 SV=1 Length = 306
Score = 97.1 bits (240), Expect = 6e-19 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 9/182 (4%) Frame = -3
Query: 519 DRMLADDASFKAWQQRVKARNELRESQEFGRDPD-----NKNWEDWLDDSWGDYSEY--- 364 D ++D+ F+ W++R +A ELRE QE D K WEDW+ DS + E Sbjct: 103 DDEMSDEEKFETWKRRAEAIVELREGQEEIGDSGVVADVTKKWEDWIVDSDDSFVESWTR 162
Query: 363 -VGGKDSGWYFDESDWEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDR 187 G D DE GG+ + M R+M + D+ +EDR Sbjct: 163 DSAGSDDNLELDELTIPDGGLVK---------MVRDMVLGAE---------EEDILYEDR 204
Query: 186 VFRFTSQTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNL 7 +FR+ S + KF + AHD+L++PFL R+V+TVPLAA+ LD+RR+QKL + Sbjct: 205 IFRYASSKSAKFLAVLILIPWALDFLAHDYLLMPFLDRYVKTVPLAAQTLDVRRNQKLEM 264
Query: 6 VE 1 V+ Sbjct: 265 VK 266
>tr|Q67Z96|Q67Z96_ARATH Putative uncharacterized protein At4g31041 OS=Arabidopsis thaliana GN=At4g31041 PE=2 SV=1 Length = 438
Score = 97.1 bits (240), Expect = 6e-19 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 9/182 (4%) Frame = -3
Query: 519 DRMLADDASFKAWQQRVKARNELRESQEFGRDPD-----NKNWEDWLDDSWGDYSEY--- 364 D ++D+ F+ W++R +A ELRE QE D K WEDW+ DS + E Sbjct: 103 DDEMSDEEKFETWKRRAEAIVELREGQEEIGDSGVVADVTKKWEDWIVDSDDSFVESWTR 162
Query: 363 -VGGKDSGWYFDESDWEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDR 187 G D DE GG+ + M R+M + D+ +EDR Sbjct: 163 DSAGSDDNLELDELTIPDGGLVK---------MVRDMVLGAE---------EEDILYEDR 204
Query: 186 VFRFTSQTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNL 7 +FR+ S + KF + AHD+L++PFL R+V+TVPLAA+ LD+RR+QKL + Sbjct: 205 IFRYASSKSAKFLAVLILIPWALDFLAHDYLLMPFLDRYVKTVPLAAQTLDVRRNQKLEM 264
Query: 6 VE 1 V+ Sbjct: 265 VK 266
>tr|Q67YG9|Q67YG9_ARATH Putative uncharacterized protein At4g31041 OS=Arabidopsis thaliana GN=At4g31041 PE=2 SV=1 Length = 438
Score = 97.1 bits (240), Expect = 6e-19 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 9/182 (4%) Frame = -3
Query: 519 DRMLADDASFKAWQQRVKARNELRESQEFGRDPD-----NKNWEDWLDDSWGDYSEY--- 364 D ++D+ F+ W++R +A ELRE QE D K WEDW+ DS + E Sbjct: 103 DDEMSDEEKFETWKRRAEAIVELREGQEEIGDSGVVADVTKKWEDWIVDSDDSFVESWTR 162
Query: 363 -VGGKDSGWYFDESDWEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDR 187 G D DE GG+ + M R+M + D+ +EDR Sbjct: 163 DSAGSDDNLELDELTIPDGGLVK---------MVRDMVLGAE---------EEDILYEDR 204
Query: 186 VFRFTSQTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNL 7 +FR+ S + KF + AHD+L++PFL R+V+TVPLAA+ LD+RR+QKL + Sbjct: 205 IFRYASSKSAKFLAVLILIPWALDFLAHDYLLMPFLDRYVKTVPLAAQTLDVRRNQKLEM 264
Query: 6 VE 1 V+ Sbjct: 265 VK 266
>tr|Q67YB4|Q67YB4_ARATH Putative uncharacterized protein At4g31041 OS=Arabidopsis thaliana GN=At4g31041 PE=2 SV=1 Length = 438
Score = 97.1 bits (240), Expect = 6e-19 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 9/182 (4%) Frame = -3
Query: 519 DRMLADDASFKAWQQRVKARNELRESQEFGRDPD-----NKNWEDWLDDSWGDYSEY--- 364 D ++D+ F+ W++R +A ELRE QE D K WEDW+ DS + E Sbjct: 103 DDEMSDEEKFETWKRRAEAIVELREGQEEIGDSGVVADVTKKWEDWIVDSDDSFVESWTR 162
Query: 363 -VGGKDSGWYFDESDWEKGGVPRAPPKLPERGMGRNMKXXXXXXXXXXXEVKADLAFEDR 187 G D DE GG+ + M R+M + D+ +EDR Sbjct: 163 DSAGSDDNLELDELTIPDGGLVK---------MVRDMVLGAE---------EEDILYEDR 204
Query: 186 VFRFTSQTTVKFXXXXXXXXXXXPYTAHDFLIVPFLTRWVETVPLAAEMLDLRRSQKLNL 7 +FR+ S + KF + AHD+L++PFL R+V+TVPLAA+ LD+RR+QKL + Sbjct: 205 IFRYASSKSAKFLAVLILIPWALDFLAHDYLLMPFLDRYVKTVPLAAQTLDVRRNQKLEM 264
Query: 6 VE 1 V+ Sbjct: 265 VK 266
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