BP918058
Clone id YMU001_000109_B05
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTGGGGGGGGAGGGAAGCGCGCGTGCGAGAGAGAGAGATTTGCACCCCACAACCACGTCG
TCACCTGACACAAAACGCCTTCCAAGGGGCAAAAGAAAAAAATCGAACTCCCAAGTCCCT
GCTGACTCCCACATGGCACCCTCCTGACTCCTCAATATCCGACATCCTCGAATTATCAGT
TTATAGGCGCCAATCATACAGTTTCTCAAACAGTCGCCTCTCTACAGCTGTGTGTAGACA
CTAAATAAGTCTCCTCCTTTCGCACGCTGAGTGAAGGGTGCAGCGATCAATATGGAACAT
GTAGTAATGCAGCATGTACAAGCAGGTGAAGCAACGTGAGA
■■Homology search results ■■ -
sp_hit_id Q65S94
Definition sp|Q65S94|TGT_MANSM Queuine tRNA-ribosyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E)
Align length 52
Score (bit) 33.9
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918058|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_B05.
(341 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q65S94|TGT_MANSM Queuine tRNA-ribosyltransferase OS=Mannheimi... 34 0.26
sp|Q6LU69|TGT_PHOPR Queuine tRNA-ribosyltransferase OS=Photobact... 33 0.44
sp|P18115|THAB_XENLA Thyroid hormone receptor alpha-B OS=Xenopus... 33 0.58
sp|P15204|THAA_XENLA Thyroid hormone receptor alpha-A OS=Xenopus... 33 0.58
sp|A1SWU0|TGT_PSYIN Queuine tRNA-ribosyltransferase OS=Psychromo... 32 0.75
sp|P57831|TGT_PASMU Queuine tRNA-ribosyltransferase OS=Pasteurel... 32 0.75
sp|Q0I4R8|TGT_HAES1 Queuine tRNA-ribosyltransferase OS=Haemophil... 32 0.75
sp|Q02777|THA_RANCA Thyroid hormone receptor alpha OS=Rana cates... 32 0.98
sp|A4W779|TGT_ENT38 Queuine tRNA-ribosyltransferase OS=Enterobac... 32 0.98
sp|Q07851|VE2_HPV65 Regulatory protein E2 OS=Human papillomaviru... 31 2.2
sp|A1JNT0|TGT_YERE8 Queuine tRNA-ribosyltransferase OS=Yersinia ... 31 2.2
sp|Q7VLQ4|TGT_HAEDU Queuine tRNA-ribosyltransferase OS=Haemophil... 31 2.2
sp|A6VN75|TGT_ACTSZ Queuine tRNA-ribosyltransferase OS=Actinobac... 31 2.2
sp|Q66DW5|TGT_YERPS Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9
sp|A4TPH6|TGT_YERPP Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9
sp|Q1CLA2|TGT_YERPN Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9
sp|Q8ZC33|TGT_YERPE Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9
sp|Q1C4H4|TGT_YERPA Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9
sp|A7FLF5|TGT_YERP3 Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9
sp|Q7MNH1|TGT_VIBVY Queuine tRNA-ribosyltransferase OS=Vibrio vu... 30 2.9
sp|Q8DEY0|TGT_VIBVU Queuine tRNA-ribosyltransferase OS=Vibrio vu... 30 2.9
sp|Q5E3D2|TGT_VIBF1 Queuine tRNA-ribosyltransferase OS=Vibrio fi... 30 3.7
sp|A8GAM5|TGT_SERP5 Queuine tRNA-ribosyltransferase OS=Serratia ... 30 3.7
sp|Q1QTM9|TGT_CHRSD Queuine tRNA-ribosyltransferase OS=Chromohal... 30 3.7
sp|P53604|MSO1_YEAST Protein MSO1 OS=Saccharomyces cerevisiae GN... 30 3.7
sp|A8H2K8|TGT_SHEPA Queuine tRNA-ribosyltransferase OS=Shewanell... 30 4.9
sp|B0TND4|TGT_SHEHH Queuine tRNA-ribosyltransferase OS=Shewanell... 30 4.9
sp|A3N087|TGT_ACTP2 Queuine tRNA-ribosyltransferase OS=Actinobac... 30 4.9
sp|Q9D968|HCFC2_MOUSE Host cell factor 2 OS=Mus musculus GN=Hcfc... 29 6.4
sp|A7MT83|TGT_VIBHB Queuine tRNA-ribosyltransferase OS=Vibrio ha... 29 8.3

>sp|Q65S94|TGT_MANSM Queuine tRNA-ribosyltransferase OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=tgt PE=3 SV=1
Length = 379

Score = 33.9 bits (76), Expect = 0.26
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Frame = -3

Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205
C+TC + Y++H+D+C T+H+ +RL+ + TA+E+ F+
Sbjct: 308 CYTCQHYTKSYLYHLDKCGEILGARLNTIHNLRYYQRLMEQIRTAIEQDRFD 359


>sp|Q6LU69|TGT_PHOPR Queuine tRNA-ribosyltransferase
OS=Photobacterium profundum GN=tgt PE=3 SV=1
Length = 375

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Frame = -3

Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205
C+TCL Y++H+D+C T+H+ +RL+ + +A+E F+
Sbjct: 304 CYTCLNYSKAYLYHLDKCNEILGSRLNTIHNLRYYQRLMASIRSAIEEDRFD 355


>sp|P18115|THAB_XENLA Thyroid hormone receptor alpha-B OS=Xenopus
laevis GN=thra-B PE=2 SV=2
Length = 418

Score = 32.7 bits (73), Expect = 0.58
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1

Query: 58 SSPDTKRLPRGKRKKSNSQVPADSHMAPS*LLNI 159
S PD KR P GKRK+ NSQ S M+ L+++
Sbjct: 12 SEPDEKRWPDGKRKRKNSQCMGKSGMSGDSLVSL 45


>sp|P15204|THAA_XENLA Thyroid hormone receptor alpha-A OS=Xenopus
laevis GN=thra-A PE=1 SV=2
Length = 418

Score = 32.7 bits (73), Expect = 0.58
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1

Query: 58 SSPDTKRLPRGKRKKSNSQVPADSHMAPS*LLNI 159
S PD KR P GKRK+ NSQ S M+ L+++
Sbjct: 12 SEPDEKRWPDGKRKRKNSQCMGKSGMSGDSLVSL 45


>sp|A1SWU0|TGT_PSYIN Queuine tRNA-ribosyltransferase OS=Psychromonas
ingrahamii (strain 37) GN=tgt PE=3 SV=1
Length = 374

Score = 32.3 bits (72), Expect = 0.75
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = -3

Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFEKLYD 193
C+TC Y++H+D+C T+H+ +RL+ L A+E+ E D
Sbjct: 304 CYTCKNYTRAYLYHLDKCGEILGARLNTIHNLSYYQRLMKGLREAIEQGKLEDFVD 359


>sp|P57831|TGT_PASMU Queuine tRNA-ribosyltransferase OS=Pasteurella
multocida GN=tgt PE=3 SV=1
Length = 385

Score = 32.3 bits (72), Expect = 0.75
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Frame = -3

Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205
C+TC + Y++H+D+C T+H+ +RL+ + A+E FE
Sbjct: 308 CYTCKHYTKAYLYHLDKCGEILGARLNTIHNLRYYQRLMAQIRQAIEEDRFE 359


>sp|Q0I4R8|TGT_HAES1 Queuine tRNA-ribosyltransferase OS=Haemophilus
somnus (strain 129Pt) GN=tgt PE=3 SV=1
Length = 376

Score = 32.3 bits (72), Expect = 0.75
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Frame = -3

Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205
C+TC + Y++H+D+C T+H+ +RL+ + A+E FE
Sbjct: 308 CYTCKHYTKAYLYHLDKCGEILGARLNTIHNLHYYQRLMAQIRQAIEEDRFE 359


>sp|Q02777|THA_RANCA Thyroid hormone receptor alpha OS=Rana
catesbeiana GN=thra PE=2 SV=1
Length = 418

Score = 32.0 bits (71), Expect = 0.98
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1

Query: 58 SSPDTKRLPRGKRKKSNSQVPADSHMA 138
S PD KR P GKRK+ NSQ S M+
Sbjct: 12 SEPDEKRWPDGKRKRKNSQCMGKSGMS 38


>sp|A4W779|TGT_ENT38 Queuine tRNA-ribosyltransferase OS=Enterobacter
sp. (strain 638) GN=tgt PE=3 SV=1
Length = 375

Score = 32.0 bits (71), Expect = 0.98
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Frame = -3

Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205
C+TC + Y++H+DRC T+H+ +RL+ L A+E E
Sbjct: 304 CYTCRHYSRAYLYHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLE 355


>sp|Q07851|VE2_HPV65 Regulatory protein E2 OS=Human papillomavirus
type 65 GN=E2 PE=3 SV=1
Length = 402

Score = 30.8 bits (68), Expect = 2.2
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +1

Query: 22 RARERDLHPTTTSSPDTK--RLPRGKRKKSNSQVPADS 129
R + R+ PT+T+SP+T R+ RG+R++ + P ++
Sbjct: 234 RGKSRESQPTSTTSPETSGLRVRRGRRQRKSGPGPGET 271


tr_hit_id B7ZYV0
Definition tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 36
Score (bit) 43.5
E-value 0.005
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918058|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_B05.
(341 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.005
tr|B6SL14|B6SL14_MAIZE ACR4 OS=Zea mays PE=2 SV=1 44 0.005
tr|B4G0N4|B4G0N4_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.005
tr|Q75IY1|Q75IY1_ORYSJ Os03g0413100 protein OS=Oryza sativa subs... 39 0.13
tr|Q75IY0|Q75IY0_ORYSJ Putative ACT domain containing protein, A... 39 0.13
tr|A7P5V9|A7P5V9_VITVI Chromosome chr4 scaffold_6, whole genome ... 39 0.13
tr|A3AJ25|A3AJ25_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.13
tr|A2XHY2|A2XHY2_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.13
tr|A7P2B7|A7P2B7_VITVI Chromosome chr1 scaffold_5, whole genome ... 38 0.29
tr|A5BD32|A5BD32_VITVI Putative uncharacterized protein OS=Vitis... 38 0.29
tr|A9NND6|A9NND6_PICSI Putative uncharacterized protein OS=Picea... 37 0.49
tr|A7QUU8|A7QUU8_VITVI Chromosome chr1 scaffold_180, whole genom... 37 0.49
tr|A5C2B4|A5C2B4_VITVI Putative uncharacterized protein OS=Vitis... 37 0.49
tr|A5AWQ7|A5AWQ7_VITVI Putative uncharacterized protein (Chromos... 37 0.49
tr|A7P9X8|A7P9X8_VITVI Chromosome chr14 scaffold_9, whole genome... 37 0.64
tr|A7PHK3|A7PHK3_VITVI Chromosome chr17 scaffold_16, whole genom... 36 1.1
tr|A5B662|A5B662_VITVI Putative uncharacterized protein OS=Vitis... 36 1.1
tr|Q9LQB5|Q9LQB5_ARATH F4N2.2 OS=Arabidopsis thaliana PE=4 SV=1 35 1.4
tr|Q9LNA5|Q9LNA5_ARATH F5O11.14 (At1g12420) (Putative uncharacte... 35 1.4
tr|Q8LJW3|Q8LJW3_ARATH ACR4 (At1g69040) OS=Arabidopsis thaliana ... 35 1.4
tr|Q8GWT8|Q8GWT8_ARATH Putative uncharacterized protein At1g6904... 35 1.4
tr|Q3ECF7|Q3ECF7_ARATH Uncharacterized protein At1g69040.2 OS=Ar... 35 1.4
tr|Q7XVN5|Q7XVN5_ORYSJ Os04g0391500 protein OS=Oryza sativa subs... 35 1.9
tr|Q01LC6|Q01LC6_ORYSA OSIGBa0145N07.1 protein OS=Oryza sativa G... 35 1.9
tr|B6SV85|B6SV85_MAIZE ACR4 OS=Zea mays PE=2 SV=1 35 1.9
tr|B4YPV8|B4YPV8_BRAOA Putative uncharacterized protein OS=Brass... 35 1.9
tr|A7QK86|A7QK86_VITVI Chromosome chr2 scaffold_112, whole genom... 35 1.9
tr|A5ADW0|A5ADW0_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9
tr|A3ATA6|A3ATA6_ORYSJ Putative uncharacterized protein OS=Oryza... 35 1.9
tr|A2XSU7|A2XSU7_ORYSI Putative uncharacterized protein OS=Oryza... 35 1.9

>tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 440

Score = 43.5 bits (101), Expect = 0.005
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID C ++S ER+R+I CL A+ERR+ E L
Sbjct: 296 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 331


>tr|B6SL14|B6SL14_MAIZE ACR4 OS=Zea mays PE=2 SV=1
Length = 458

Score = 43.5 bits (101), Expect = 0.005
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID C ++S ER+R+I CL A+ERR+ E L
Sbjct: 314 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 349


>tr|B4G0N4|B4G0N4_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 458

Score = 43.5 bits (101), Expect = 0.005
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID C ++S ER+R+I CL A+ERR+ E L
Sbjct: 314 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 349


>tr|Q75IY1|Q75IY1_ORYSJ Os03g0413100 protein OS=Oryza sativa subsp.
japonica GN=OsACR7 PE=2 SV=1
Length = 452

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID ++S ER+R+I CL A+ERR+ E L
Sbjct: 307 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 342


>tr|Q75IY0|Q75IY0_ORYSJ Putative ACT domain containing protein,
ACR4, with alternative splicing forms (ACT domain
containing protein, putative, expressed) OS=Oryza sativa
subsp. japonica GN=LOC_Os03g29980 PE=4 SV=1
Length = 374

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID ++S ER+R+I CL A+ERR+ E L
Sbjct: 229 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 264


>tr|A7P5V9|A7P5V9_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032680001
PE=4 SV=1
Length = 481

Score = 38.9 bits (89), Expect = 0.13
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -3

Query: 315 MLHYYMFHIDRCTLHSACERRRLI*CLHTAVERRLFE 205
M Y++ HID CT++S E+ ++ CL A+ERR+ E
Sbjct: 323 MQEYFIRHIDGCTVNSEGEKEHVVKCLEAAIERRVCE 359


>tr|A3AJ25|A3AJ25_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_010797 PE=4 SV=1
Length = 455

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID ++S ER+R+I CL A+ERR+ E L
Sbjct: 310 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 345


>tr|A2XHY2|A2XHY2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_12028 PE=4 SV=1
Length = 455

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID ++S ER+R+I CL A+ERR+ E L
Sbjct: 310 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 345


>tr|A7P2B7|A7P2B7_VITVI Chromosome chr1 scaffold_5, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029995001
PE=4 SV=1
Length = 432

Score = 37.7 bits (86), Expect = 0.29
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID + S ER+R+I CL A+ERR+ E L
Sbjct: 298 YYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGL 333


>tr|A5BD32|A5BD32_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_015490 PE=4 SV=1
Length = 416

Score = 37.7 bits (86), Expect = 0.29
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = -3

Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199
YY+ HID + S ER+R+I CL A+ERR+ E L
Sbjct: 282 YYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGL 317