BP918058 |
Clone id |
YMU001_000109_B05 |
Library |
YMU01 |
Length |
341 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000109_B05. |
Accession |
BP918058 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2782Contig1 |
Sequence |
GTGGGGGGGGAGGGAAGCGCGCGTGCGAGAGAGAGAGATTTGCACCCCACAACCACGTCG TCACCTGACACAAAACGCCTTCCAAGGGGCAAAAGAAAAAAATCGAACTCCCAAGTCCCT GCTGACTCCCACATGGCACCCTCCTGACTCCTCAATATCCGACATCCTCGAATTATCAGT TTATAGGCGCCAATCATACAGTTTCTCAAACAGTCGCCTCTCTACAGCTGTGTGTAGACA CTAAATAAGTCTCCTCCTTTCGCACGCTGAGTGAAGGGTGCAGCGATCAATATGGAACAT GTAGTAATGCAGCATGTACAAGCAGGTGAAGCAACGTGAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q65S94 |
Definition |
sp|Q65S94|TGT_MANSM Queuine tRNA-ribosyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) |
Align length |
52 |
Score (bit) |
33.9 |
E-value |
0.26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918058|Adiantum capillus-veneris mRNA, clone: YMU001_000109_B05. (341 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q65S94|TGT_MANSM Queuine tRNA-ribosyltransferase OS=Mannheimi... 34 0.26 sp|Q6LU69|TGT_PHOPR Queuine tRNA-ribosyltransferase OS=Photobact... 33 0.44 sp|P18115|THAB_XENLA Thyroid hormone receptor alpha-B OS=Xenopus... 33 0.58 sp|P15204|THAA_XENLA Thyroid hormone receptor alpha-A OS=Xenopus... 33 0.58 sp|A1SWU0|TGT_PSYIN Queuine tRNA-ribosyltransferase OS=Psychromo... 32 0.75 sp|P57831|TGT_PASMU Queuine tRNA-ribosyltransferase OS=Pasteurel... 32 0.75 sp|Q0I4R8|TGT_HAES1 Queuine tRNA-ribosyltransferase OS=Haemophil... 32 0.75 sp|Q02777|THA_RANCA Thyroid hormone receptor alpha OS=Rana cates... 32 0.98 sp|A4W779|TGT_ENT38 Queuine tRNA-ribosyltransferase OS=Enterobac... 32 0.98 sp|Q07851|VE2_HPV65 Regulatory protein E2 OS=Human papillomaviru... 31 2.2 sp|A1JNT0|TGT_YERE8 Queuine tRNA-ribosyltransferase OS=Yersinia ... 31 2.2 sp|Q7VLQ4|TGT_HAEDU Queuine tRNA-ribosyltransferase OS=Haemophil... 31 2.2 sp|A6VN75|TGT_ACTSZ Queuine tRNA-ribosyltransferase OS=Actinobac... 31 2.2 sp|Q66DW5|TGT_YERPS Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9 sp|A4TPH6|TGT_YERPP Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9 sp|Q1CLA2|TGT_YERPN Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9 sp|Q8ZC33|TGT_YERPE Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9 sp|Q1C4H4|TGT_YERPA Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9 sp|A7FLF5|TGT_YERP3 Queuine tRNA-ribosyltransferase OS=Yersinia ... 30 2.9 sp|Q7MNH1|TGT_VIBVY Queuine tRNA-ribosyltransferase OS=Vibrio vu... 30 2.9 sp|Q8DEY0|TGT_VIBVU Queuine tRNA-ribosyltransferase OS=Vibrio vu... 30 2.9 sp|Q5E3D2|TGT_VIBF1 Queuine tRNA-ribosyltransferase OS=Vibrio fi... 30 3.7 sp|A8GAM5|TGT_SERP5 Queuine tRNA-ribosyltransferase OS=Serratia ... 30 3.7 sp|Q1QTM9|TGT_CHRSD Queuine tRNA-ribosyltransferase OS=Chromohal... 30 3.7 sp|P53604|MSO1_YEAST Protein MSO1 OS=Saccharomyces cerevisiae GN... 30 3.7 sp|A8H2K8|TGT_SHEPA Queuine tRNA-ribosyltransferase OS=Shewanell... 30 4.9 sp|B0TND4|TGT_SHEHH Queuine tRNA-ribosyltransferase OS=Shewanell... 30 4.9 sp|A3N087|TGT_ACTP2 Queuine tRNA-ribosyltransferase OS=Actinobac... 30 4.9 sp|Q9D968|HCFC2_MOUSE Host cell factor 2 OS=Mus musculus GN=Hcfc... 29 6.4 sp|A7MT83|TGT_VIBHB Queuine tRNA-ribosyltransferase OS=Vibrio ha... 29 8.3
>sp|Q65S94|TGT_MANSM Queuine tRNA-ribosyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=tgt PE=3 SV=1 Length = 379
Score = 33.9 bits (76), Expect = 0.26 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 9/52 (17%) Frame = -3
Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205 C+TC + Y++H+D+C T+H+ +RL+ + TA+E+ F+ Sbjct: 308 CYTCQHYTKSYLYHLDKCGEILGARLNTIHNLRYYQRLMEQIRTAIEQDRFD 359
>sp|Q6LU69|TGT_PHOPR Queuine tRNA-ribosyltransferase OS=Photobacterium profundum GN=tgt PE=3 SV=1 Length = 375
Score = 33.1 bits (74), Expect = 0.44 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 9/52 (17%) Frame = -3
Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205 C+TCL Y++H+D+C T+H+ +RL+ + +A+E F+ Sbjct: 304 CYTCLNYSKAYLYHLDKCNEILGSRLNTIHNLRYYQRLMASIRSAIEEDRFD 355
>sp|P18115|THAB_XENLA Thyroid hormone receptor alpha-B OS=Xenopus laevis GN=thra-B PE=2 SV=2 Length = 418
Score = 32.7 bits (73), Expect = 0.58 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +1
Query: 58 SSPDTKRLPRGKRKKSNSQVPADSHMAPS*LLNI 159 S PD KR P GKRK+ NSQ S M+ L+++ Sbjct: 12 SEPDEKRWPDGKRKRKNSQCMGKSGMSGDSLVSL 45
>sp|P15204|THAA_XENLA Thyroid hormone receptor alpha-A OS=Xenopus laevis GN=thra-A PE=1 SV=2 Length = 418
Score = 32.7 bits (73), Expect = 0.58 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +1
Query: 58 SSPDTKRLPRGKRKKSNSQVPADSHMAPS*LLNI 159 S PD KR P GKRK+ NSQ S M+ L+++ Sbjct: 12 SEPDEKRWPDGKRKRKNSQCMGKSGMSGDSLVSL 45
>sp|A1SWU0|TGT_PSYIN Queuine tRNA-ribosyltransferase OS=Psychromonas ingrahamii (strain 37) GN=tgt PE=3 SV=1 Length = 374
Score = 32.3 bits (72), Expect = 0.75 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Frame = -3
Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFEKLYD 193 C+TC Y++H+D+C T+H+ +RL+ L A+E+ E D Sbjct: 304 CYTCKNYTRAYLYHLDKCGEILGARLNTIHNLSYYQRLMKGLREAIEQGKLEDFVD 359
>sp|P57831|TGT_PASMU Queuine tRNA-ribosyltransferase OS=Pasteurella multocida GN=tgt PE=3 SV=1 Length = 385
Score = 32.3 bits (72), Expect = 0.75 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Frame = -3
Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205 C+TC + Y++H+D+C T+H+ +RL+ + A+E FE Sbjct: 308 CYTCKHYTKAYLYHLDKCGEILGARLNTIHNLRYYQRLMAQIRQAIEEDRFE 359
>sp|Q0I4R8|TGT_HAES1 Queuine tRNA-ribosyltransferase OS=Haemophilus somnus (strain 129Pt) GN=tgt PE=3 SV=1 Length = 376
Score = 32.3 bits (72), Expect = 0.75 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Frame = -3
Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205 C+TC + Y++H+D+C T+H+ +RL+ + A+E FE Sbjct: 308 CYTCKHYTKAYLYHLDKCGEILGARLNTIHNLHYYQRLMAQIRQAIEEDRFE 359
>sp|Q02777|THA_RANCA Thyroid hormone receptor alpha OS=Rana catesbeiana GN=thra PE=2 SV=1 Length = 418
Score = 32.0 bits (71), Expect = 0.98 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +1
Query: 58 SSPDTKRLPRGKRKKSNSQVPADSHMA 138 S PD KR P GKRK+ NSQ S M+ Sbjct: 12 SEPDEKRWPDGKRKRKNSQCMGKSGMS 38
>sp|A4W779|TGT_ENT38 Queuine tRNA-ribosyltransferase OS=Enterobacter sp. (strain 638) GN=tgt PE=3 SV=1 Length = 375
Score = 32.0 bits (71), Expect = 0.98 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%) Frame = -3
Query: 333 CFTCLYMLHYYMFHIDRC---------TLHSACERRRLI*CLHTAVERRLFE 205 C+TC + Y++H+DRC T+H+ +RL+ L A+E E Sbjct: 304 CYTCRHYSRAYLYHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLE 355
>sp|Q07851|VE2_HPV65 Regulatory protein E2 OS=Human papillomavirus type 65 GN=E2 PE=3 SV=1 Length = 402
Score = 30.8 bits (68), Expect = 2.2 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = +1
Query: 22 RARERDLHPTTTSSPDTK--RLPRGKRKKSNSQVPADS 129 R + R+ PT+T+SP+T R+ RG+R++ + P ++ Sbjct: 234 RGKSRESQPTSTTSPETSGLRVRRGRRQRKSGPGPGET 271
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7ZYV0 |
Definition |
tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
36 |
Score (bit) |
43.5 |
E-value |
0.005 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918058|Adiantum capillus-veneris mRNA, clone: YMU001_000109_B05. (341 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.005 tr|B6SL14|B6SL14_MAIZE ACR4 OS=Zea mays PE=2 SV=1 44 0.005 tr|B4G0N4|B4G0N4_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.005 tr|Q75IY1|Q75IY1_ORYSJ Os03g0413100 protein OS=Oryza sativa subs... 39 0.13 tr|Q75IY0|Q75IY0_ORYSJ Putative ACT domain containing protein, A... 39 0.13 tr|A7P5V9|A7P5V9_VITVI Chromosome chr4 scaffold_6, whole genome ... 39 0.13 tr|A3AJ25|A3AJ25_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.13 tr|A2XHY2|A2XHY2_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.13 tr|A7P2B7|A7P2B7_VITVI Chromosome chr1 scaffold_5, whole genome ... 38 0.29 tr|A5BD32|A5BD32_VITVI Putative uncharacterized protein OS=Vitis... 38 0.29 tr|A9NND6|A9NND6_PICSI Putative uncharacterized protein OS=Picea... 37 0.49 tr|A7QUU8|A7QUU8_VITVI Chromosome chr1 scaffold_180, whole genom... 37 0.49 tr|A5C2B4|A5C2B4_VITVI Putative uncharacterized protein OS=Vitis... 37 0.49 tr|A5AWQ7|A5AWQ7_VITVI Putative uncharacterized protein (Chromos... 37 0.49 tr|A7P9X8|A7P9X8_VITVI Chromosome chr14 scaffold_9, whole genome... 37 0.64 tr|A7PHK3|A7PHK3_VITVI Chromosome chr17 scaffold_16, whole genom... 36 1.1 tr|A5B662|A5B662_VITVI Putative uncharacterized protein OS=Vitis... 36 1.1 tr|Q9LQB5|Q9LQB5_ARATH F4N2.2 OS=Arabidopsis thaliana PE=4 SV=1 35 1.4 tr|Q9LNA5|Q9LNA5_ARATH F5O11.14 (At1g12420) (Putative uncharacte... 35 1.4 tr|Q8LJW3|Q8LJW3_ARATH ACR4 (At1g69040) OS=Arabidopsis thaliana ... 35 1.4 tr|Q8GWT8|Q8GWT8_ARATH Putative uncharacterized protein At1g6904... 35 1.4 tr|Q3ECF7|Q3ECF7_ARATH Uncharacterized protein At1g69040.2 OS=Ar... 35 1.4 tr|Q7XVN5|Q7XVN5_ORYSJ Os04g0391500 protein OS=Oryza sativa subs... 35 1.9 tr|Q01LC6|Q01LC6_ORYSA OSIGBa0145N07.1 protein OS=Oryza sativa G... 35 1.9 tr|B6SV85|B6SV85_MAIZE ACR4 OS=Zea mays PE=2 SV=1 35 1.9 tr|B4YPV8|B4YPV8_BRAOA Putative uncharacterized protein OS=Brass... 35 1.9 tr|A7QK86|A7QK86_VITVI Chromosome chr2 scaffold_112, whole genom... 35 1.9 tr|A5ADW0|A5ADW0_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9 tr|A3ATA6|A3ATA6_ORYSJ Putative uncharacterized protein OS=Oryza... 35 1.9 tr|A2XSU7|A2XSU7_ORYSI Putative uncharacterized protein OS=Oryza... 35 1.9
>tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 440
Score = 43.5 bits (101), Expect = 0.005 Identities = 19/36 (52%), Positives = 26/36 (72%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID C ++S ER+R+I CL A+ERR+ E L Sbjct: 296 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 331
>tr|B6SL14|B6SL14_MAIZE ACR4 OS=Zea mays PE=2 SV=1 Length = 458
Score = 43.5 bits (101), Expect = 0.005 Identities = 19/36 (52%), Positives = 26/36 (72%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID C ++S ER+R+I CL A+ERR+ E L Sbjct: 314 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 349
>tr|B4G0N4|B4G0N4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 458
Score = 43.5 bits (101), Expect = 0.005 Identities = 19/36 (52%), Positives = 26/36 (72%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID C ++S ER+R+I CL A+ERR+ E L Sbjct: 314 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 349
>tr|Q75IY1|Q75IY1_ORYSJ Os03g0413100 protein OS=Oryza sativa subsp. japonica GN=OsACR7 PE=2 SV=1 Length = 452
Score = 38.9 bits (89), Expect = 0.13 Identities = 18/36 (50%), Positives = 25/36 (69%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID ++S ER+R+I CL A+ERR+ E L Sbjct: 307 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 342
>tr|Q75IY0|Q75IY0_ORYSJ Putative ACT domain containing protein, ACR4, with alternative splicing forms (ACT domain containing protein, putative, expressed) OS=Oryza sativa subsp. japonica GN=LOC_Os03g29980 PE=4 SV=1 Length = 374
Score = 38.9 bits (89), Expect = 0.13 Identities = 18/36 (50%), Positives = 25/36 (69%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID ++S ER+R+I CL A+ERR+ E L Sbjct: 229 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 264
>tr|A7P5V9|A7P5V9_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032680001 PE=4 SV=1 Length = 481
Score = 38.9 bits (89), Expect = 0.13 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = -3
Query: 315 MLHYYMFHIDRCTLHSACERRRLI*CLHTAVERRLFE 205 M Y++ HID CT++S E+ ++ CL A+ERR+ E Sbjct: 323 MQEYFIRHIDGCTVNSEGEKEHVVKCLEAAIERRVCE 359
>tr|A3AJ25|A3AJ25_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_010797 PE=4 SV=1 Length = 455
Score = 38.9 bits (89), Expect = 0.13 Identities = 18/36 (50%), Positives = 25/36 (69%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID ++S ER+R+I CL A+ERR+ E L Sbjct: 310 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 345
>tr|A2XHY2|A2XHY2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_12028 PE=4 SV=1 Length = 455
Score = 38.9 bits (89), Expect = 0.13 Identities = 18/36 (50%), Positives = 25/36 (69%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID ++S ER+R+I CL A+ERR+ E L Sbjct: 310 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 345
>tr|A7P2B7|A7P2B7_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029995001 PE=4 SV=1 Length = 432
Score = 37.7 bits (86), Expect = 0.29 Identities = 18/36 (50%), Positives = 24/36 (66%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID + S ER+R+I CL A+ERR+ E L Sbjct: 298 YYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGL 333
>tr|A5BD32|A5BD32_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015490 PE=4 SV=1 Length = 416
Score = 37.7 bits (86), Expect = 0.29 Identities = 18/36 (50%), Positives = 24/36 (66%) Frame = -3
Query: 306 YYMFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 199 YY+ HID + S ER+R+I CL A+ERR+ E L Sbjct: 282 YYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGL 317
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