| BP918047 |
| Clone id |
YMU001_000109_A06 |
| Library |
YMU01 |
| Length |
349 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000109_A06. |
| Accession |
BP918047 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL1525Contig1 |
| Sequence |
AAATGACAAGCCTCAAATTGCATTGAATCATTGTGTTCTTGCAGCAGTTGGTCCTCAGTC
AATCGACTTGAAAATTCACCAAGTTACATGTGCATACAATCTGCGCCACTCAGCCAGTGT
GGGTTCCCTTCCTAACTGCTCCAGTAGTACTTACTTGGCAGCGTTCAAAACCAGAAGGTC
CTGAATCTTACTGGAGAGAAACACTTCCTCGGCAGCTGTCAGGATTTTTGGCTTTCTAGA
ACCATTGCTCACAAGAAAAGAGCGAATGGGATCCGGCGTACTGCGCTGCAAAACAGGTAC
TTTACATTTACTATTTTTGGTATTTAGGCTACTTATTTTAGCAGCAGAC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P38023 |
| Definition |
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) |
| Align length |
69 |
| Score (bit) |
35.4 |
| E-value |
0.021 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918047|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_A06.
(349 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec... 35 0.021
sp|Q03065|RPSB_ANASP RNA polymerase sigma-B factor OS=Anabaena s... 34 0.035
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen... 31 0.35
sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synec... 33 0.57
sp|P37682|YIAU_ECOLI Uncharacterized HTH-type transcriptional re... 31 2.2
sp|O64240|VG50_BPMD2 Putative adenosylcobalamin-dependent ribonu... 30 4.8
sp|P65788|PROA_MYCTU Gamma-glutamyl phosphate reductase OS=Mycob... 29 6.3
sp|A5U5C2|PROA_MYCTA Gamma-glutamyl phosphate reductase OS=Mycob... 29 6.3
sp|A4T2I0|PROA_MYCGI Gamma-glutamyl phosphate reductase OS=Mycob... 29 6.3
sp|A1KLC0|PROA_MYCBP Gamma-glutamyl phosphate reductase OS=Mycob... 29 6.3
sp|P65789|PROA_MYCBO Gamma-glutamyl phosphate reductase OS=Mycob... 29 6.3
sp|Q05262|VG50_BPML5 Putative adenosylcobalamin-dependent ribonu... 29 6.3
sp|Q857H2|VG50_BPMB2 Putative adenosylcobalamin-dependent ribonu... 29 6.3
sp|P51171|SCNNG_XENLA Amiloride-sensitive sodium channel subunit... 29 8.2
sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synecho... 29 8.2
sp|Q1B639|PROA_MYCSS Gamma-glutamyl phosphate reductase OS=Mycob... 29 8.2
sp|A1UIZ7|PROA_MYCSK Gamma-glutamyl phosphate reductase OS=Mycob... 29 8.2
sp|A3Q2E3|PROA_MYCSJ Gamma-glutamyl phosphate reductase OS=Mycob... 29 8.2
sp|Q6GLE8|LRC28_XENTR Leucine-rich repeat-containing protein 28 ... 29 8.2
>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1
OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1
PE=3 SV=2
Length = 399
Score = 35.4 bits (80), Expect(2) = 0.021
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = -2
Query: 312 SKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXLEQL 133
+K K V + T D IR +L G + ++L A EE+ L+ +I D LEQL
Sbjct: 76 AKAKAKVRKTYTEDSIRLYLQEIG--RIRLLRADEEIELARQIADLLALERIRDELLEQL 133
Query: 132 GREPTLAEW 106
R P+ AEW
Sbjct: 134 DRLPSDAEW 142
Score = 21.2 bits (43), Expect(2) = 0.021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 40 KNTMIQCNLRLVI 2
K+ M+Q NLRLV+
Sbjct: 164 KDKMVQSNLRLVV 176
>sp|Q03065|RPSB_ANASP RNA polymerase sigma-B factor OS=Anabaena sp.
(strain PCC 7120) GN=sigB PE=3 SV=1
Length = 332
Score = 34.3 bits (77), Expect(2) = 0.035
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = -2
Query: 348 SAAKISSLNTKNSKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXX 169
S ++++ L +KN++ T D + +L G + +L+ +E+F + ++Q
Sbjct: 4 STSQVTKLKSKNNEFSY------TADAVSIYLHKIG--RVPLLSHEQEIFFAQQVQQMMV 55
Query: 168 XXXXXXXXLEQLGREPTLAEW 106
E+L REPTL EW
Sbjct: 56 MFTAKEELAEKLQREPTLQEW 76
Score = 21.6 bits (44), Expect(2) = 0.035
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 40 KNTMIQCNLRLVI 2
K MIQ NLRLV+
Sbjct: 98 KQKMIQANLRLVV 110
>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena
sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
Length = 390
Score = 31.2 bits (69), Expect(2) = 0.35
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -2
Query: 279 TPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXLEQLGREPTLAEW 106
T D IR +L G + ++L A EE+ L+ KI D E+L R+P +EW
Sbjct: 78 TEDSIRLYLQEIG--RIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEW 133
Score = 21.2 bits (43), Expect(2) = 0.35
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 40 KNTMIQCNLRLVI 2
K+ M+Q NLRLV+
Sbjct: 155 KDKMVQSNLRLVV 167
>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2
OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2
PE=1 SV=1
Length = 320
Score = 32.7 bits (73), Expect = 0.57
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -2
Query: 279 TPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXLEQLGREPTLAEW 106
+PD +R++L G + ++LTA EE+ ++Q ++LG EP+ EW
Sbjct: 9 SPDLVRAYLQEIG--RVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEW 64
>sp|P37682|YIAU_ECOLI Uncharacterized HTH-type transcriptional
regulator yiaU OS=Escherichia coli (strain K12) GN=yiaU
PE=4 SV=1
Length = 324
Score = 30.8 bits (68), Expect = 2.2
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Frame = +2
Query: 65 DLKIHQVTCAY-NLRHSASVGSLPNCSSSTYLAAFKTRRS*ILLERNTSSAAVRIFG--- 232
+LKI V A N+ H+A+V + + S YLA F+++ + +R T + FG
Sbjct: 10 ELKIISVIAASENISHAATVLGIAQANVSKYLADFESKVGLKVFDRTTRQLMLTPFGTAL 69
Query: 233 --FLEPLLTRKERMGS 274
++ +L R E++ +
Sbjct: 70 LPYINDMLDRNEQLNN 85
>sp|O64240|VG50_BPMD2 Putative adenosylcobalamin-dependent
ribonucleoside-triphosphate reductase OS=Mycobacterium
phage D29 GN=50 PE=3 SV=1
Length = 693
Score = 29.6 bits (65), Expect = 4.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 153 TWQRSKPEGPESYWRETLPRQLSGFLA 233
T+ R KP+G W ET+ R +SG LA
Sbjct: 19 TYSRVKPDGTRETWPETVERVVSGNLA 45
>sp|P65788|PROA_MYCTU Gamma-glutamyl phosphate reductase
OS=Mycobacterium tuberculosis GN=proA PE=3 SV=1
Length = 415
Score = 29.3 bits (64), Expect = 6.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -2
Query: 342 AKISSLNTKNSKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQD 178
A++ ++ T C V V Q + D L+++ +R+P + AAE + + + I +
Sbjct: 226 AQVPTIETGVGNCHVYVHQAADLDVAERILLNSKTRRPSVCNAAETLLVDAAIAE 280
>sp|A5U5C2|PROA_MYCTA Gamma-glutamyl phosphate reductase
OS=Mycobacterium tuberculosis (strain ATCC 25177 /
H37Ra) GN=proA PE=3 SV=1
Length = 415
Score = 29.3 bits (64), Expect = 6.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -2
Query: 342 AKISSLNTKNSKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQD 178
A++ ++ T C V V Q + D L+++ +R+P + AAE + + + I +
Sbjct: 226 AQVPTIETGVGNCHVYVHQAADLDVAERILLNSKTRRPSVCNAAETLLVDAAIAE 280
>sp|A4T2I0|PROA_MYCGI Gamma-glutamyl phosphate reductase
OS=Mycobacterium gilvum (strain PYR-GCK) GN=proA PE=3
SV=1
Length = 415
Score = 29.3 bits (64), Expect = 6.3
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = -2
Query: 342 AKISSLNTKNSKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQD 178
A++ ++ T C V V + D S +++ +R+P + AAE + + + + D
Sbjct: 226 AQVPTIETGVGNCHVYVHSSADLDTAESIVLNAKTRRPSVCNAAESLLIDAAVAD 280
>sp|A1KLC0|PROA_MYCBP Gamma-glutamyl phosphate reductase
OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
GN=proA PE=3 SV=1
Length = 415
Score = 29.3 bits (64), Expect = 6.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -2
Query: 342 AKISSLNTKNSKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQD 178
A++ ++ T C V V Q + D L+++ +R+P + AAE + + + I +
Sbjct: 226 AQVPTIETGVGNCHVYVHQAADLDVAERILLNSKTRRPSVCNAAETLLVDAAIAE 280
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9RTR6 |
| Definition |
tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
62 |
| Score (bit) |
51.2 |
| E-value |
2.0e-05 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918047|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_A06.
(349 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella paten... 51 2e-05
tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella paten... 49 2e-04
tr|O22455|O22455_ARATH Sigma factor 2 OS=Arabidopsis thaliana GN... 44 3e-04
tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 P... 47 6e-04
tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrell... 47 6e-04
tr|B7JX54|B7JX54_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su... 44 0.003
tr|B4BWT8|B4BWT8_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa... 44 0.003
tr|Q8GWC1|Q8GWC1_ARATH Putative plastid RNA polymerase sigma-sub... 39 0.012
tr|O22056|O22056_ARATH Plastid RNA polymerase sigma-subunit (At1... 39 0.012
tr|Q9MTH3|Q9MTH3_SINAL Sigma factor 2 OS=Sinapis alba GN=sig2 PE... 37 0.034
tr|B8LLW6|B8LLW6_PICSI Putative uncharacterized protein OS=Picea... 39 0.073
tr|B8LQB0|B8LQB0_PICSI Putative uncharacterized protein OS=Picea... 39 0.074
tr|B1X0Q3|B1X0Q3_CYAA5 Group 2 sigma-70 RNA polymerase sigma fac... 40 0.075
tr|A3ITT4|A3ITT4_9CHRO RNA polymerase sigma factor SigD OS=Cyano... 39 0.13
tr|Q2JT33|Q2JT33_SYNJA RNA polymerase sigma factor OS=Synechococ... 39 0.17
tr|Q2JIA4|Q2JIA4_SYNJB RNA polymerase sigma factor OS=Synechococ... 39 0.17
tr|Q4C529|Q4C529_CROWT Sigma-70 region 3:Sigma-70 region 2:Sigma... 37 0.37
tr|Q5N3Q1|Q5N3Q1_SYNP6 RNA polymerase sigma factor OS=Synechococ... 35 0.45
tr|A0ZJC3|A0ZJC3_NODSP RNA polymerase sigma factor OS=Nodularia ... 34 0.74
tr|B8C0J0|B8C0J0_THAPS Plastid RNA polymerase sigma factor (Frag... 30 0.75
tr|Q7XXT0|Q7XXT0_ORYSJ Plastid sigma factor 2A OS=Oryza sativa s... 32 0.94
tr|Q53KH8|Q53KH8_ORYSJ Sigma-70 region 3 family protein, express... 32 0.94
tr|Q53JE7|Q53JE7_ORYSJ Sigma-70 region 3, putative (Putative unc... 32 0.94
tr|B8AUZ3|B8AUZ3_ORYSI Putative uncharacterized protein OS=Oryza... 32 0.94
tr|Q9ZPL2|Q9ZPL2_MAIZE Sigma factor SIG2A OS=Zea mays GN=sig2A P... 32 0.94
tr|Q84Q84|Q84Q84_ORYSJ Os03g0271100 protein OS=Oryza sativa subs... 28 0.94
tr|A3AGH1|A3AGH1_ORYSJ Putative uncharacterized protein OS=Oryza... 28 0.95
tr|Q53KH7|Q53KH7_ORYSJ Os11g0448400 protein OS=Oryza sativa subs... 32 0.96
tr|Q10NF3|Q10NF3_ORYSJ cDNA clone:J013116E16, full insert sequen... 28 0.97
tr|B0CDC4|B0CDC4_ACAM1 RNA polymerase sigma-70 factor OS=Acaryoc... 33 1.2
>tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_178031 PE=4 SV=1
Length = 583
Score = 51.2 bits (121), Expect = 2e-05
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = -2
Query: 291 LQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXLEQLGREPTLA 112
+ R+ DPIRS+L ++ K+L+A+EEV LS KIQD +GREPTL+
Sbjct: 263 IMRTPSDPIRSYL--RDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLS 320
Query: 111 EW 106
EW
Sbjct: 321 EW 322
>tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_160930 PE=4 SV=1
Length = 591
Score = 48.5 bits (114), Expect = 2e-04
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = -2
Query: 303 KVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQ--DXXXXXXXXXXXLEQLG 130
K P + + DP+R++L G K K+LTA+EEV LS KIQ D ++G
Sbjct: 264 KKPQISQEPTDPVRAYLRDIG--KTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIG 321
Query: 129 REPTLAEWRR 100
REP++ EW R
Sbjct: 322 REPSIGEWSR 331
>tr|O22455|O22455_ARATH Sigma factor 2 OS=Arabidopsis thaliana
GN=SIG2 PE=2 SV=1
Length = 574
Score = 44.3 bits (103), Expect(2) = 3e-04
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = -2
Query: 348 SAAKISSLNTKNSKCKVPVLQRSTP--DPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDX 175
+A+ I S+ T +S K ++ + DP+R ++ S K K+LT EE LS+ IQD
Sbjct: 231 TASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHELSAGIQDL 290
Query: 174 XXXXXXXXXXLEQLGREPTLAEW 106
E+ GR+PT A+W
Sbjct: 291 LKLERLQTELTERSGRQPTFAQW 313
Score = 23.1 bits (48), Expect(2) = 3e-04
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 43 CKNTMIQCNLRLVI 2
CK+ MI+ N+RLVI
Sbjct: 334 CKDKMIKSNIRLVI 347
>tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2
SV=1
Length = 579
Score = 46.6 bits (109), Expect = 6e-04
Identities = 27/70 (38%), Positives = 36/70 (51%)
Frame = -2
Query: 309 KCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXLEQLG 130
K K P L DP+R++L G + K+LTA EEV LS +IQD ++G
Sbjct: 250 KPKKPQLAADPSDPVRAYLRDIG--RTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIG 307
Query: 129 REPTLAEWRR 100
R T+ EW R
Sbjct: 308 RNATIGEWSR 317
>tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrella
patens subsp. patens GN=PpSig2 PE=4 SV=1
Length = 579
Score = 46.6 bits (109), Expect = 6e-04
Identities = 27/70 (38%), Positives = 36/70 (51%)
Frame = -2
Query: 309 KCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXLEQLG 130
K K P L DP+R++L G + K+LTA EEV LS +IQD ++G
Sbjct: 250 KPKKPQLAADPSDPVRAYLRDIG--RTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIG 307
Query: 129 REPTLAEWRR 100
R T+ EW R
Sbjct: 308 RNATIGEWSR 317
>tr|B7JX54|B7JX54_SYNP8 RNA polymerase, sigma 70 subunit, RpoD
subfamily OS=Synechococcus sp. (strain PCC 8801 / RF-1)
GN=PCC8801_3061 PE=4 SV=1
Length = 318
Score = 44.3 bits (103), Expect = 0.003
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = -2
Query: 291 LQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXLEQLGREPTLA 112
+ +S+PDP+R++L G + +LT EE+ + ++Q E+LG+EPT+A
Sbjct: 3 VSKSSPDPVRAYLREIG--RVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIA 60
Query: 111 EWRRLYAHVTW*IFKSID*GPTAAR 37
+W + + +I+ G A R
Sbjct: 61 QWAKAAKMTQKELRSAIEAGEAAKR 85
>tr|B4BWT8|B4BWT8_9CHRO RNA polymerase, sigma 70 subunit, RpoD
family OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_1042
PE=4 SV=1
Length = 318
Score = 44.3 bits (103), Expect = 0.003
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = -2
Query: 291 LQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXLEQLGREPTLA 112
+ +S+PDP+R++L G + +LT EE+ + ++Q E+LG+EPT+A
Sbjct: 3 VSKSSPDPVRAYLREIG--RVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIA 60
Query: 111 EWRRLYAHVTW*IFKSID*GPTAAR 37
+W + + +I+ G A R
Sbjct: 61 QWAKAAKMTQKELRSAIEAGEAAKR 85
>tr|Q8GWC1|Q8GWC1_ARATH Putative plastid RNA polymerase
sigma-subunit SIG1 OS=Arabidopsis thaliana
GN=At1g08540/F22O13_2 PE=2 SV=1
Length = 572
Score = 38.5 bits (88), Expect(2) = 0.012
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -2
Query: 348 SAAKISSLNTKNSKCKVPVLQRSTP--DPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDX 175
+A+ I S+ T +S K ++ + DP+R ++ S K +LT EE LS+ IQD
Sbjct: 231 TASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGIQDL 288
Query: 174 XXXXXXXXXXLEQLGREPTLAEW 106
E+ GR+PT A+W
Sbjct: 289 LKLERLQTELTERSGRQPTFAQW 311
Score = 23.1 bits (48), Expect(2) = 0.012
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 43 CKNTMIQCNLRLVI 2
CK+ MI+ N+RLVI
Sbjct: 332 CKDKMIKSNIRLVI 345
>tr|O22056|O22056_ARATH Plastid RNA polymerase sigma-subunit
(At1g08540) (Sigma factor) (T27G7.22) (F22O13.2) (Sigma
factor SigB) (SigB) OS=Arabidopsis thaliana GN=SIG1 PE=2
SV=2
Length = 572
Score = 38.5 bits (88), Expect(2) = 0.012
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -2
Query: 348 SAAKISSLNTKNSKCKVPVLQRSTP--DPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDX 175
+A+ I S+ T +S K ++ + DP+R ++ S K +LT EE LS+ IQD
Sbjct: 231 TASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGIQDL 288
Query: 174 XXXXXXXXXXLEQLGREPTLAEW 106
E+ GR+PT A+W
Sbjct: 289 LKLERLQTELTERSGRQPTFAQW 311
Score = 23.1 bits (48), Expect(2) = 0.012
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 43 CKNTMIQCNLRLVI 2
CK+ MI+ N+RLVI
Sbjct: 332 CKDKMIKSNIRLVI 345
>tr|Q9MTH3|Q9MTH3_SINAL Sigma factor 2 OS=Sinapis alba GN=sig2 PE=2
SV=1
Length = 575
Score = 37.0 bits (84), Expect(2) = 0.034
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -2
Query: 333 SSLNTKNSKCKVPVLQRSTP--DPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXX 160
SS+ T +S K V + DP+R ++ S K +LTA EE LS IQD
Sbjct: 236 SSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSK--LLTAREEQQLSEGIQDLLKLER 293
Query: 159 XXXXXLEQLGREPTLAEW 106
E+ G +PT ++W
Sbjct: 294 LQAELTERCGHQPTFSQW 311
Score = 23.1 bits (48), Expect(2) = 0.034
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 43 CKNTMIQCNLRLVI 2
CK+ MI+ N+RLVI
Sbjct: 332 CKDRMIKSNIRLVI 345
|