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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917998
Clone id YMU001_000108_D07
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGAGGCAAAGGTTTTCGAGGCCAATGGAAAAAAGCAGGCGCTTGTGTTGTTTGAGAGTG
AGGAGGAGGCAACTGAAGCGCTTGTATGCAAGCATGCAAGCCTTTTTCAGGGGCAAACCA
TTCGACTGGCTTTCTCAAAGTCAACAGCTGTGTAGCAAAGATAAAGCTTTAGACCAACAC
CGTATGGTTGAGGAAGTTGGCTAGCTTTTGTAACCTATCATTTTTGAAATTTGGTTTTTC
CAGAACCAATACATAGAAAAGATTCTAGGCTTTCTCAAATAGCAAAAAAGCAAGCTCTTT
GAATGTTAGCAGAGCTTTGATAGTGTGTTGCCATTTGAGCTGCACAGAAAAGATTGAAAT
TTTGTAATTAGCTTTAGATTTGTGATAGGGTGGATTAAAAGCTTGTCTGGAGCTGGCTGG
AGTTTGTCTTGACTCATTTTATCCAGTAAACTTGGTTGTTTGACAATTGATGCCATAAAG
ATGGAATGTATTTTAGCTGATGGAGTAGATGGTGTATGAG
■■Homology search results ■■ -
sp_hit_id Q6ICX4
Definition sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana
Align length 44
Score (bit) 64.3
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917998|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_D07.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homol...    64   3e-10
sp|Q6AP44|RS4_DESPS 30S ribosomal protein S4 OS=Desulfotalea psy...    30   5.3  
sp|Q32KY1|CB039_BOVIN UPF0407 protein C2orf39 homolog OS=Bos tau...    30   6.8  

>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog
           3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1
          Length = 432

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSK 140
           KVFE NGKKQALV FE+EEEA EALVCKHA+   G  IR++FS+
Sbjct: 385 KVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQ 428


>sp|Q6AP44|RS4_DESPS 30S ribosomal protein S4 OS=Desulfotalea
           psychrophila GN=rpsD PE=3 SV=1
          Length = 210

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 408 RQAFNPPYHKSKANYKISIFSVQLKWQHTIKALLTFKELAF-LLFEKA 268
           R+AF P  H      K+S ++VQL+ +  +K++    E  F L FEKA
Sbjct: 35  RRAFAPGQHGQARFKKVSDYAVQLREKQKVKSMYGVLEAQFRLTFEKA 82


>sp|Q32KY1|CB039_BOVIN UPF0407 protein C2orf39 homolog OS=Bos taurus
           PE=2 SV=1
          Length = 712

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 461 KQPSLLDKMSQDKLQPAPDKLLIHPITNLKLITKF 357
           K+ SL+D  SQ+K +P P   LIHP   LK++  F
Sbjct: 571 KERSLVDGKSQEK-EPPPSPKLIHPNDVLKILEAF 604
tr_hit_id A9RYR1
Definition tr|A9RYR1|A9RYR1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 78.2
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917998|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_D07.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RYR1|A9RYR1_PHYPA Predicted protein OS=Physcomitrella paten...    78   2e-13
tr|A9S4W5|A9S4W5_PHYPA Predicted protein OS=Physcomitrella paten...    78   3e-13
tr|A7PKW9|A7PKW9_VITVI Chromosome chr7 scaffold_20, whole genome...    76   9e-13
tr|A5AQI7|A5AQI7_VITVI Putative uncharacterized protein OS=Vitis...    76   9e-13
tr|Q84L59|Q84L59_CICAR Polypyrimidine track-binding protein homo...    67   4e-10
tr|Q5TKN2|Q5TKN2_ORYSJ Putative polypyrimidine track-binding pro...    66   1e-09
tr|Q0DHV7|Q0DHV7_ORYSJ Os05g0437300 protein OS=Oryza sativa subs...    66   1e-09
tr|B8AYK8|B8AYK8_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|A6N126|A6N126_ORYSI Ab1 polypyrimidine tract-binding protein ...    66   1e-09
tr|A3B4E0|A3B4E0_ORYSJ Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|A7Q790|A7Q790_VITVI Chromosome chr18 scaffold_59, whole genom...    65   3e-09
tr|Q0WQH0|Q0WQH0_ARATH Putative uncharacterized protein At1g4319...    64   3e-09
tr|A8MR27|A8MR27_ARATH Uncharacterized protein At1g43190.3 OS=Ar...    64   3e-09
tr|Q5N966|Q5N966_ORYSJ Polypirimidine tract binding protein-like...    57   5e-07
tr|Q0JHE8|Q0JHE8_ORYSJ cDNA clone:J023006N01, full insert sequen...    57   5e-07
tr|B8A6Y2|B8A6Y2_ORYSI Putative uncharacterized protein OS=Oryza...    57   5e-07
tr|A2ZZY7|A2ZZY7_ORYSJ Putative uncharacterized protein OS=Oryza...    57   5e-07
tr|Q4TB42|Q4TB42_TETNG Chromosome undetermined SCAF7205, whole g...    34   5.0  
tr|B8DZ82|B8DZ82_9BACT Putative uncharacterized protein OS=Dicty...    33   8.5  

>tr|A9RYR1|A9RYR1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_206932 PE=4 SV=1
          Length = 410

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 39/49 (79%), Positives = 43/49 (87%)
 Frame = +3

Query: 6   AKVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           AKVFE+NGKKQAL+LFESEE+ATEALVCKHAS  Q  TIRLAFSK  +V
Sbjct: 362 AKVFESNGKKQALMLFESEEQATEALVCKHASQLQSNTIRLAFSKLASV 410


>tr|A9S4W5|A9S4W5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_124217 PE=4 SV=1
          Length = 441

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 38/49 (77%), Positives = 43/49 (87%)
 Frame = +3

Query: 6   AKVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           AK+FE+NGKKQALVLFESEE+ATEALVCKHA+  Q  TIRLAFSK  +V
Sbjct: 393 AKIFESNGKKQALVLFESEEQATEALVCKHATQLQSNTIRLAFSKLASV 441


>tr|A7PKW9|A7PKW9_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019344001
           PE=4 SV=1
          Length = 438

 Score = 76.3 bits (186), Expect = 9e-13
 Identities = 36/48 (75%), Positives = 43/48 (89%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           K+FEANGKKQALVLFE+EE+ATEALVCKHASL  G TIR++FS+  A+
Sbjct: 391 KLFEANGKKQALVLFETEEQATEALVCKHASLIDGSTIRISFSQLQAI 438


>tr|A5AQI7|A5AQI7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002663 PE=4 SV=1
          Length = 476

 Score = 76.3 bits (186), Expect = 9e-13
 Identities = 36/48 (75%), Positives = 43/48 (89%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           K+FEANGKKQALVLFE+EE+ATEALVCKHASL  G TIR++FS+  A+
Sbjct: 429 KLFEANGKKQALVLFETEEQATEALVCKHASLIDGSTIRISFSQLQAI 476


>tr|Q84L59|Q84L59_CICAR Polypyrimidine track-binding protein
           homologue OS=Cicer arietinum GN=ptb PE=2 SV=1
          Length = 442

 Score = 67.4 bits (163), Expect = 4e-10
 Identities = 32/44 (72%), Positives = 37/44 (84%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSK 140
           KVFE NGKKQALV FE+EEEATEALVCKHAS   G  +R++FS+
Sbjct: 395 KVFEMNGKKQALVQFETEEEATEALVCKHASPLSGSIVRISFSQ 438


>tr|Q5TKN2|Q5TKN2_ORYSJ Putative polypyrimidine track-binding
           protein OS=Oryza sativa subsp. japonica GN=OJ1058_F05.5
           PE=4 SV=1
          Length = 389

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 40/48 (83%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           K+FE NGK+QAL+ FESEEEATEALV KHA+  +G TIR++FS+  ++
Sbjct: 342 KLFEVNGKRQALIQFESEEEATEALVSKHATSLEGNTIRISFSQMQSI 389


>tr|Q0DHV7|Q0DHV7_ORYSJ Os05g0437300 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0437300 PE=2 SV=1
          Length = 444

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 40/48 (83%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           K+FE NGK+QAL+ FESEEEATEALV KHA+  +G TIR++FS+  ++
Sbjct: 397 KLFEVNGKRQALIQFESEEEATEALVSKHATSLEGNTIRISFSQMQSI 444


>tr|B8AYK8|B8AYK8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20097 PE=4 SV=1
          Length = 444

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 40/48 (83%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           K+FE NGK+QAL+ FESEEEATEALV KHA+  +G TIR++FS+  ++
Sbjct: 397 KLFEVNGKRQALIQFESEEEATEALVSKHATSLEGNTIRISFSQMQSI 444


>tr|A6N126|A6N126_ORYSI Ab1 polypyrimidine tract-binding protein
           (Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 121

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 40/48 (83%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           K+FE NGK+QAL+ FESEEEATEALV KHA+  +G TIR++FS+  ++
Sbjct: 74  KLFEVNGKRQALIQFESEEEATEALVSKHATSLEGNTIRISFSQMQSI 121


>tr|A3B4E0|A3B4E0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017912 PE=4 SV=1
          Length = 373

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 40/48 (83%)
 Frame = +3

Query: 9   KVFEANGKKQALVLFESEEEATEALVCKHASLFQGQTIRLAFSKSTAV 152
           K+FE NGK+QAL+ FESEEEATEALV KHA+  +G TIR++FS+  ++
Sbjct: 326 KLFEVNGKRQALIQFESEEEATEALVSKHATSLEGNTIRISFSQMQSI 373