BP917985
Clone id YMU001_000108_C02
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATGGATGTATGGTCCACGCGGTGGGATTGGGACCAGAGGAAAGTAAGTAGTTAATGTTC
CACACGCACCAAATATTCACGCAGAATAGAGTAGTGTGTTATGAGGATGCTTCGTTTGAA
GGAATGGTCAGGCAACTCATCATTGCATTCTCCTATCTCGCCTGTGAAATTTTATTGTCC
TTTCGCAGAGAAAATGGGTGGTTAGCAACAATATCTAGTCTAATGAGCGACCACTCTTTT
TGTATGCTTCGCAATTTGTTTATAAAAAAAGAATGATTTTTGGCTCACATGCAACCTAGA
GTTCCTTCATGAACGTTGGGTTTGAAATGAAGTTTATTGTTCTCATTTTATGTAGTATTC
ATGTGTCATGGACTTCTTAAGGTAACGAGTTTTGAAGGTATGCTTCATTTGTTTGTATAT
TGTTGATCACCACTATTATACATCTGAAGTGGCATTTGGACCTCTCTCTCTC
■■Homology search results ■■ -
sp_hit_id Q3V3G7
Definition sp|Q3V3G7|GRAM2_MOUSE GRAM domain-containing protein 2 OS=Mus musculus
Align length 37
Score (bit) 30.4
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917985|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_C02.
(472 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3V3G7|GRAM2_MOUSE GRAM domain-containing protein 2 OS=Mus mu... 30 4.2
sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=... 30 5.3
sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taur... 30 5.3
sp|P57601|TSGA_BUCAI Protein tsgA homolog OS=Buchnera aphidicola... 29 9.3

>sp|Q3V3G7|GRAM2_MOUSE GRAM domain-containing protein 2 OS=Mus
musculus GN=Gramd2 PE=2 SV=1
Length = 320

Score = 30.4 bits (67), Expect = 4.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2

Query: 101 MRMLRLKEWSGNSSLHSPISPVKFYCPFAEKMGG*QQ 211
M L +W N +H ++P+K + P EK G Q+
Sbjct: 5 MMFFCLSDWQSNQQMHGKMAPLKSHVPCTEKPGKVQE 41


>sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=2
SV=1
Length = 2242

Score = 30.0 bits (66), Expect = 5.3
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3

Query: 338 NKLHFKPNVHEGTLGCM-*AKNHSFFINKLRSIQKEWSLI 222
N+ H +P +HEGT C ++NH F + S+ ++WS++
Sbjct: 273 NRGHNQPCIHEGTQRCFYTSQNHGFAVEPC-SLPRDWSVL 311


>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus
GN=LYST PE=1 SV=1
Length = 3796

Score = 30.0 bits (66), Expect = 5.3
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = -3

Query: 329 HFKPNVHEGTLGCM*AKNHSFFINKLRSIQKEWSLIRLDIVANHPFSLRKDNKISQAR*E 150
H KP G+LGC K SF + + S ++WS +R ++D IS E
Sbjct: 2110 HIKPRKLTGSLGCSIDKLQSFVDDGVASQPEKWSPLRSSETLE---KSKQDAFISSC--E 2164

Query: 149 NAMMSCLTIPS 117
+A M C T P+
Sbjct: 2165 SAKMVCETEPA 2175


>sp|P57601|TSGA_BUCAI Protein tsgA homolog OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum GN=tsgA PE=3 SV=1
Length = 388

Score = 29.3 bits (64), Expect = 9.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1

Query: 121 LQTKHPHNTLLYSA*IFGACGTLTTYFPLVPI-PPRGPYI 5
LQTKHP L+ +FG GT T+ PI +G Y+
Sbjct: 320 LQTKHPSPKLINLILLFGTIGTFLTFIITSPIVEAKGLYV 359


tr_hit_id A0FIG4
Definition tr|A0FIG4|A0FIG4_9HYME Carbamoyl-phosphate synthetase (Fragment) OS=Hockeria sp. CD023
Align length 40
Score (bit) 32.7
E-value 9.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917985|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_C02.
(472 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0FIG4|A0FIG4_9HYME Carbamoyl-phosphate synthetase (Fragment)... 33 9.3

>tr|A0FIG4|A0FIG4_9HYME Carbamoyl-phosphate synthetase (Fragment)
OS=Hockeria sp. CD023 GN=CAD PE=2 SV=1
Length = 561

Score = 32.7 bits (73), Expect = 9.3
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3

Query: 338 NKLHFKPNVHEGTLGC-M*AKNHSFFINKLRSIQKEWSLI 222
N+ H +P +H GT C M ++NH F I+ S+ KEW ++
Sbjct: 241 NRGHNQPAIHHGTKRCYMTSQNHGFAIDS-ESLPKEWEVL 279