BP917913
Clone id YMU001_000107_C04
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGACCACCAAGAGACGTCGCCTTTCTGTGATCTCTCAAAATTAATTACATCTGTGACTCT
GTCTTGAATACATGTCTGCTACAAACAATTGGTAAAAGTACATAGCTCTATAAGTCCACC
AATTGAGTGTCGAGTTGGGGGAAAGCCCAATCTCTGAACCTGTCTTGTTCATTAGTGCCA
GTGAGAGGGCTCCAAGCTGTATAACGTGTGTGCAGAGCTGATTCCAGGCAATTCTGAATC
CTTACTGCAATTTGAACTATCTTTAAGATGAAAAGTATTCGGTACTCTGATCTTTGTGAT
GTTCCTCCCTGTCTTTTCATGGTTCGGTATGGGACCAGTATCTTTTCAAGGGCATTCCTT
GCGAGCAAGAAGCTGCATTTCGTCCACCTTCTCAGCATCCTCCCCAAGAACCTTCTTTTC
TAAGCCATCATTTACACTTTTGTAAGTCCATGTATCTGGATCAAAACCTAACTCCAACAT
T
■■Homology search results ■■ -
sp_hit_id Q9LFF1
Definition sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana
Align length 43
Score (bit) 37.4
E-value 0.036
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917913|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_C04.
(481 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protei... 37 0.036
sp|O76001|OR2J3_HUMAN Olfactory receptor 2J3 OS=Homo sapiens GN=... 35 0.18
sp|Q1DFW5|FTHS_MYXXD Formate--tetrahydrofolate ligase OS=Myxococ... 32 1.5
sp|Q6AYM1|CE034_RAT Uncharacterized protein C5orf34 homolog OS=R... 31 2.5
sp|Q3UJC8|CE034_MOUSE Uncharacterized protein C5orf34 homolog OS... 31 2.5
sp|P33654|YBL2_STRCI Uncharacterized 14.2 kDa protein in blaB 3'... 31 2.6
sp|Q96EV2|RBM33_HUMAN RNA-binding protein 33 OS=Homo sapiens GN=... 31 3.3
sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protei... 30 4.4
sp|P29556|ABDA_SCHGR Homeobox protein abdominal-A homolog (Fragm... 30 7.4
sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containi... 30 7.5
sp|Q9GZK6|OR2J1_HUMAN Olfactory receptor 2J1 OS=Homo sapiens GN=... 29 9.6
sp|A4FUB0|CE034_BOVIN Uncharacterized protein C5orf34 homolog OS... 29 9.6
sp|Q6NVK9|SAAL1_XENTR Protein saal1 OS=Xenopus tropicalis GN=saa... 29 9.8
sp|Q5EB32|MTM1_XENTR Myotubularin OS=Xenopus tropicalis GN=mtm1 ... 29 9.8
sp|Q52KU6|MTM1_XENLA Myotubularin OS=Xenopus laevis GN=mtm1 PE=2... 29 9.8
sp|Q9SDN0|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic O... 29 9.8

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic OS=Arabidopsis thaliana
GN=MEE40 PE=2 SV=1
Length = 754

Score = 37.4 bits (85), Expect = 0.036
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -2

Query: 480 MLELGFDPDTWTYKSVNDGLEKKVLGEDAEKVDEMQLLARKEC 352
ML+ G+DPD +TY SV GL K LGE E V+ + + ++C
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCK--LGEVKEAVEVLDQMITRDC 361


>sp|O76001|OR2J3_HUMAN Olfactory receptor 2J3 OS=Homo sapiens
GN=OR2J3 PE=2 SV=1
Length = 311

Score = 35.0 bits (79), Expect = 0.18
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3

Query: 371 FLLARNALEKILVPYRTMKRQGGTSQRSEYRILF---ILKIVQIAVRIQNCLESALHTRY 201
F+LA E +L+ + R + Y +L ++ +A + SALH+ +
Sbjct: 106 FVLALGTTECVLLVVMSYDRYAAVCRPLHYTVLMHPRFCHLLAVASWVSGFTNSALHSSF 165

Query: 200 TAWSPLTGTNEQDRF 156
T W PL G + D F
Sbjct: 166 TFWVPLCGHRQVDHF 180


>sp|Q1DFW5|FTHS_MYXXD Formate--tetrahydrofolate ligase OS=Myxococcus
xanthus (strain DK 1622) GN=fhs PE=3 SV=1
Length = 551

Score = 32.0 bits (71), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1

Query: 187 LSLALMNKTGSEIGLSPNSTLNWWTYRA 104
++L M G+E+GLSP L W T+RA
Sbjct: 1 MTLRAMTDVGAELGLSPEDVLPWGTHRA 28


>sp|Q6AYM1|CE034_RAT Uncharacterized protein C5orf34 homolog
OS=Rattus norvegicus PE=2 SV=1
Length = 640

Score = 31.2 bits (69), Expect = 2.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3

Query: 357 PCEQEAAFR---PPSQHPPQEPSFLSHHLHFCKSMYLDQ 464
PC E F PPS HP ++P + HF S Y +Q
Sbjct: 31 PCGSEFLFEKAPPPSTHPLEQPERIRQRTHFVISNYREQ 69


>sp|Q3UJC8|CE034_MOUSE Uncharacterized protein C5orf34 homolog
OS=Mus musculus PE=2 SV=1
Length = 639

Score = 31.2 bits (69), Expect = 2.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3

Query: 357 PCEQEAAFR---PPSQHPPQEPSFLSHHLHFCKSMYLDQ 464
PC E F PPS HP ++P + HF S Y +Q
Sbjct: 31 PCGSEFLFEKALPPSTHPLEQPERIRQRTHFVISNYREQ 69


>sp|P33654|YBL2_STRCI Uncharacterized 14.2 kDa protein in blaB
3'region OS=Streptomyces cacaoi PE=4 SV=1
Length = 132

Score = 31.2 bits (69), Expect = 2.6
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -1

Query: 238 FRIAWNQLCTHVIQLGALSLALMNKTGSEIGLSPNSTLNWWTYRAMYFYQLFVADMYSRQ 59
++ W++ + + S A M T S I +P T +WW RA++ + + M S
Sbjct: 64 WKTTWSRTSPNSSRSSPRSPASMASTSSYISSTPYLTRSWWVRRALHGHARRIRSMTSTT 123

Query: 58 SHR 50
S R
Sbjct: 124 SSR 126


>sp|Q96EV2|RBM33_HUMAN RNA-binding protein 33 OS=Homo sapiens
GN=RBM33 PE=1 SV=3
Length = 1170

Score = 30.8 bits (68), Expect = 3.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3

Query: 357 PCEQEAAFRPPSQHPPQEPSFLSHHLH 437
P + +PP QHPPQ P HH H
Sbjct: 612 PHQPPPQHQPPPQHPPQHPPQHQHHHH 638


>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial OS=Arabidopsis thaliana
GN=At2g15630 PE=2 SV=1
Length = 627

Score = 30.4 bits (67), Expect = 4.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2

Query: 480 MLELGFDPDTWTYKSVNDGLEKKVLGEDAEKV 385
ML LGF+P TY ++ GL K GE AE++
Sbjct: 563 MLSLGFNPTLLTYNALLKGLSKNQEGELAEEL 594


>sp|P29556|ABDA_SCHGR Homeobox protein abdominal-A homolog
(Fragment) OS=Schistocerca gregaria GN=ABD-A PE=3 SV=1
Length = 157

Score = 29.6 bits (65), Expect = 7.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3

Query: 363 EQEAAFRPPSQHPPQEPSFLSHHLH 437
+Q+ + P Q PPQ+ +SHHLH
Sbjct: 108 QQQQQQQAPPQQPPQQHHTISHHLH 132


>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing
protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580
PE=3 SV=1
Length = 763

Score = 29.6 bits (65), Expect = 7.5
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2

Query: 480 MLELGFDPDTWTYKSVNDGLEKKVLGEDAEKVDEMQLLARKEC 352
ML+ G DPD +TY S+ +GL K ED ++ + + K C
Sbjct: 487 MLDNGVDPDVYTYNSLLNGLCKTSKFEDV--METYKTMVEKGC 527


tr_hit_id B0V1T3
Definition tr|B0V1T3|B0V1T3_HUMAN Olfactory receptor, family 2, subfamily J, member 3 (Fragment) OS=Homo sapiens
Align length 75
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917913|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_C04.
(481 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0V1T3|B0V1T3_HUMAN Olfactory receptor, family 2, subfamily J... 35 1.9
tr|B0UY52|B0UY52_HUMAN Olfactory receptor, family 2, subfamily J... 35 1.9
tr|A3LSJ8|A3LSJ8_PICST Predicted protein (Fragment) OS=Pichia st... 35 2.4
tr|A9S8X1|A9S8X1_PHYPA Predicted protein OS=Physcomitrella paten... 34 3.1
tr|A3XM88|A3XM88_9FLAO Acetyltransferase OS=Leeuwenhoekiella bla... 33 5.4
tr|Q9U0Z7|Q9U0Z7_LEIMA Hypothetical transmembrane protein L5683.... 33 5.4
tr|A5ESY1|A5ESY1_BRASB Putative methylase/helicase OS=Bradyrhizo... 33 7.0

>tr|B0V1T3|B0V1T3_HUMAN Olfactory receptor, family 2, subfamily J,
member 3 (Fragment) OS=Homo sapiens GN=DAMC-365H22.2-001
PE=3 SV=1
Length = 258

Score = 35.0 bits (79), Expect = 1.9
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3

Query: 371 FLLARNALEKILVPYRTMKRQGGTSQRSEYRILF---ILKIVQIAVRIQNCLESALHTRY 201
F+LA E +L+ + R + Y +L ++ +A + SALH+ +
Sbjct: 106 FVLALGTTECVLLVVMSYDRYAAVCRPLHYTVLMHPRFCHLLAVASWVSGFTNSALHSSF 165

Query: 200 TAWSPLTGTNEQDRF 156
T W PL G + D F
Sbjct: 166 TFWVPLCGHRQVDHF 180


>tr|B0UY52|B0UY52_HUMAN Olfactory receptor, family 2, subfamily J,
member 3 OS=Homo sapiens GN=DAAP-334J16.2-001 PE=3 SV=1
Length = 311

Score = 35.0 bits (79), Expect = 1.9
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3

Query: 371 FLLARNALEKILVPYRTMKRQGGTSQRSEYRILF---ILKIVQIAVRIQNCLESALHTRY 201
F+LA E +L+ + R + Y +L ++ +A + SALH+ +
Sbjct: 106 FVLALGTTECVLLVVMSYDRYAAVCRPLHYTVLMHPRFCHLLAVASWVSGFTNSALHSSF 165

Query: 200 TAWSPLTGTNEQDRF 156
T W PL G + D F
Sbjct: 166 TFWVPLCGHRQVDHF 180


>tr|A3LSJ8|A3LSJ8_PICST Predicted protein (Fragment) OS=Pichia
stipitis GN=PICST_42853 PE=4 SV=2
Length = 653

Score = 34.7 bits (78), Expect = 2.4
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = -2

Query: 465 FDPDTWTYKSVNDGL--EKKVLGEDAEKVDEMQLLARKECP*KDTGPIPNHEKTGRNITK 292
FDP+TW ++N + E+++L E ++A + I N + R ++
Sbjct: 399 FDPETWVEYNLNPLVCKERRILEESVVNSSRSTMIANSDST-FSINSIGNKLRNYRALSL 457

Query: 291 IRVPNTFHLKDSSNCSKDSELPGISSAHTLYSLE 190
R T L ++SN S + LP S++ +L+S++
Sbjct: 458 TRRSKTTSLDEASNQSSEFTLPERSTSPSLFSMK 491


>tr|A9S8X1|A9S8X1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_163525 PE=4 SV=1
Length = 174

Score = 34.3 bits (77), Expect = 3.1
Identities = 30/110 (27%), Positives = 50/110 (45%)
Frame = -2

Query: 462 DPDTWTYKSVNDGLEKKVLGEDAEKVDEMQLLARKECP*KDTGPIPNHEKTGRNITKIRV 283
D +T T+ + + KVLG+D +++ +L K+ P P+ H+K R+ T+ R
Sbjct: 31 DHNTNTFHQMAAKEQGKVLGDDEKQISHTKLHPIKQSP----PPLHKHQKPRRS-TRFRP 85

Query: 282 PNTFHLKDSSNCSKDSELPGISSAHTLYSLEPSHWH**TRQVQRLGFPPT 133
N S+ +K S G + +HT L+P + R PPT
Sbjct: 86 ANKMTENGGSSSNKTS--TGTAPSHTQPGLQPRQCE--NGKNSRYQLPPT 131


>tr|A3XM88|A3XM88_9FLAO Acetyltransferase OS=Leeuwenhoekiella
blandensis MED217 GN=MED217_07986 PE=4 SV=1
Length = 180

Score = 33.5 bits (75), Expect = 5.4
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -1

Query: 235 RIAWNQLCTHVIQLGALSLALMNKTGSE-IGLSPNSTLNWWTYRAMYFYQLFVADMY 68
R+ ++QL ++++ A S+ L K G E +GL + T +YR Y YQL D++
Sbjct: 124 RLEFHQLYANILEENAPSIKLFEKQGFERVGLKKDWTRVGGSYRNEYLYQLIHTDVH 180


>tr|Q9U0Z7|Q9U0Z7_LEIMA Hypothetical transmembrane protein L5683.03
OS=Leishmania major GN=L5683.03 PE=4 SV=1
Length = 409

Score = 33.5 bits (75), Expect = 5.4
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +3

Query: 381 RPPSQHPPQEPSFLSHHLH-----FCKSMYLDQNLTPT 479
RPP+ PP P FLS HLH +C + + TPT
Sbjct: 73 RPPAPPPPPPPLFLSRHLHSMPWLWCTCVKMQMYYTPT 110


>tr|A5ESY1|A5ESY1_BRASB Putative methylase/helicase
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=BBta_7413 PE=4 SV=1
Length = 1444

Score = 33.1 bits (74), Expect = 7.0
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1

Query: 289 DLCDVPPCLFMVRYGTSIFSRAFLASKKL-HFVHLLSILP 405
D C+ LF+ +YG IF +A AS L FV L+S+LP
Sbjct: 73 DACEAASVLFLRKYGKPIFRKAGSASAALPQFVKLVSLLP 112