BP917848
Clone id YMU001_000106_C10
Library
Length 380
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGGTGCTGAAGCTACCTTCCTCTCTCCTTGGCTTTTCTAAACTTACTCCTAACACCTCCC
TCTTCCGAAGTGCAATATCTGAAGTTCCCTGGCCAGAATCGTCATACAGCGACTCAAGAT
AGTAGTACTTTTCCAAGATAGCTCGGGTGCCTGGTTCAATAACGGGCTGATTCTGCAAAA
TTGAAATTAATTTCTCTTGCAGATAACTTCCATCAAGAGTAAGAAACTCTTCAAAGCAAT
GTCTGACAGACCAGGACAGAGACCCATAGGCACCTGCAGACGCAAAAGCAAAGGTTCCAA
CCAGCTTTGGCATAAGCGGCACTCTTCCTATTAATCCACAAGCTGCGTAGAGTGTGCTGC
CAGCTACTATGAAGGCTCCT
■■Homology search results ■■ -
sp_hit_id Q9LSL9
Definition sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana
Align length 32
Score (bit) 30.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917848|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_C10.
(380 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protei... 30 3.7
sp|A2T6W2|ZN449_PANTR Zinc finger protein 449 OS=Pan troglodytes... 29 6.3
sp|A1YFW6|ZN449_PANPA Zinc finger protein 449 OS=Pan paniscus GN... 29 6.3
sp|Q6P9G9|ZN449_HUMAN Zinc finger protein 449 OS=Homo sapiens GN... 29 6.3
sp|A1YEQ3|ZN449_GORGO Zinc finger protein 449 OS=Gorilla gorilla... 29 6.3
sp|A1RXA6|DNLI1_THEPD DNA ligase 1 OS=Thermofilum pendens (strai... 29 6.3
sp|Q8NVI2|ATKB_STAAW Potassium-transporting ATPase B chain OS=St... 29 6.3
sp|Q6G7N3|ATKB_STAAS Potassium-transporting ATPase B chain OS=St... 29 6.3
sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv... 29 8.2
sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Cae... 29 8.2
sp|Q73GG9|FABH_WOLPM 3-oxoacyl-[acyl-carrier-protein] synthase 3... 29 8.2

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein
At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3

Query: 183 QFCRISPLLNQAPELSWKSTTILSRCMTILAR 88
QFC +SPLL PE S ++ R ++IL++
Sbjct: 41 QFCSVSPLLRNLPEEESDSMSVPHRLLSILSK 72


>sp|A2T6W2|ZN449_PANTR Zinc finger protein 449 OS=Pan troglodytes
GN=ZNF449 PE=3 SV=1
Length = 518

Score = 29.3 bits (64), Expect = 6.3
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2

Query: 212 IKSKKLFKAMSDRPGQRPIG--TCRRK-SKGSNQLWHKR-HSSY*STSCVECAASYYEGS 379
++S L++ G+RP C+++ ++ S+ + H+R HS + C+EC S+ GS
Sbjct: 361 LRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGS 420


>sp|A1YFW6|ZN449_PANPA Zinc finger protein 449 OS=Pan paniscus
GN=ZNF449 PE=3 SV=1
Length = 518

Score = 29.3 bits (64), Expect = 6.3
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2

Query: 212 IKSKKLFKAMSDRPGQRPIG--TCRRK-SKGSNQLWHKR-HSSY*STSCVECAASYYEGS 379
++S L++ G+RP C+++ ++ S+ + H+R HS + C+EC S+ GS
Sbjct: 361 LRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGS 420


>sp|Q6P9G9|ZN449_HUMAN Zinc finger protein 449 OS=Homo sapiens
GN=ZNF449 PE=2 SV=3
Length = 518

Score = 29.3 bits (64), Expect = 6.3
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2

Query: 212 IKSKKLFKAMSDRPGQRPIG--TCRRK-SKGSNQLWHKR-HSSY*STSCVECAASYYEGS 379
++S L++ G+RP C+++ ++ S+ + H+R HS + C+EC S+ GS
Sbjct: 361 LRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGS 420


>sp|A1YEQ3|ZN449_GORGO Zinc finger protein 449 OS=Gorilla gorilla
gorilla GN=ZNF449 PE=3 SV=1
Length = 518

Score = 29.3 bits (64), Expect = 6.3
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2

Query: 212 IKSKKLFKAMSDRPGQRPIG--TCRRK-SKGSNQLWHKR-HSSY*STSCVECAASYYEGS 379
++S L++ G+RP C+++ ++ S+ + H+R HS + C+EC S+ GS
Sbjct: 361 LRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGS 420


>sp|A1RXA6|DNLI1_THEPD DNA ligase 1 OS=Thermofilum pendens (strain
Hrk 5) GN=lig1 PE=3 SV=1
Length = 531

Score = 29.3 bits (64), Expect = 6.3
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2

Query: 241 HCFEEFLTLD---GSYLQEKLISILQNQPV--IEPGTRAILEKYYYLESLYDDSGQGTSD 77
H F E+ + G L + + +L +P+ +EP AI E Y LE + SG+G+ +
Sbjct: 49 HVFPEYDNRELGVGYSLVREALKVLDQKPLFLVEPQPPAITEVYRLLERIAGVSGEGSRE 108

Query: 76 IALRKREVLGVSLEKPRRE 20
L+ E L L + E
Sbjct: 109 KKLKLLEGLFSRLSRKEVE 127


>sp|Q8NVI2|ATKB_STAAW Potassium-transporting ATPase B chain
OS=Staphylococcus aureus (strain MW2) GN=kdpB PE=3 SV=1
Length = 675

Score = 29.3 bits (64), Expect = 6.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -2

Query: 154 PGTRAILEKYY---YLESLYDDSGQGTSDIALRKREVLGVSLEKPRREEGSFST 2
P + +LEK Y+ S+YDD+ +G S + L K+ + E P+ +G++ T
Sbjct: 321 PVNQQMLEKLIVAAYMSSIYDDTPEGKSIVRLAKQMYIN---ELPKDIDGTYKT 371


>sp|Q6G7N3|ATKB_STAAS Potassium-transporting ATPase B chain
OS=Staphylococcus aureus (strain MSSA476) GN=kdpB PE=3
SV=1
Length = 675

Score = 29.3 bits (64), Expect = 6.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -2

Query: 154 PGTRAILEKYY---YLESLYDDSGQGTSDIALRKREVLGVSLEKPRREEGSFST 2
P + +LEK Y+ S+YDD+ +G S + L K+ + E P+ +G++ T
Sbjct: 321 PVNQQMLEKLIVAAYMSSIYDDTPEGKSIVRLAKQMYIN---ELPKDIDGTYKT 371


>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human
herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1
Length = 413

Score = 28.9 bits (63), Expect = 8.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1

Query: 293 LCFCVCRCLWVSVLVCQTLL 234
LC C+C CL V V VC LL
Sbjct: 281 LCVCLCVCLCVCVCVCVCLL 300


>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase
OS=Caenorhabditis elegans GN=Y54G2A.17 PE=2 SV=2
Length = 563

Score = 28.9 bits (63), Expect = 8.2
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = -2

Query: 277 AGAYGSLSWSVRHCFEEFLTLDGSYLQEKLISILQNQPVIEPGTRAILEKYYYLESLYDD 98
+G LS +R CF + TL G Y + +SI+ + + E ++ ++ + + +
Sbjct: 337 SGDLSYLSKELRECFVKVSTLKGEYKFFEKMSIVASNDINEETIMSLNDQQHEINAF--- 393

Query: 97 SGQGTSDIALRKREVLG 47
G GT + +K+ LG
Sbjct: 394 -GVGTHLVTCQKQPALG 409


tr_hit_id A7NWP8
Definition tr|A7NWP8|A7NWP8_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera
Align length 82
Score (bit) 42.0
E-value 0.015
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917848|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_C10.
(380 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7NWP8|A7NWP8_VITVI Chromosome chr5 scaffold_2, whole genome ... 42 0.015
tr|Q4RF76|Q4RF76_TETNG Chromosome 14 SCAF15120, whole genome sho... 39 0.17
tr|A9UVX7|A9UVX7_MONBE Predicted protein OS=Monosiga brevicollis... 37 0.37
tr|Q5YZG2|Q5YZG2_NOCFA Putative hydrolase OS=Nocardia farcinica ... 34 4.1
tr|B4GAI3|B4GAI3_DROPE GL11385 OS=Drosophila persimilis GN=GL113... 34 4.1
tr|B6R4X5|B6R4X5_9RHOB ABC-3 protein OS=Pseudovibrio sp. JE062 G... 33 5.3
tr|A9V4X3|A9V4X3_MONBE Predicted protein OS=Monosiga brevicollis... 33 5.3
tr|A9V250|A9V250_MONBE Predicted protein OS=Monosiga brevicollis... 33 5.3
tr|Q291M8|Q291M8_DROPS GA15734 OS=Drosophila pseudoobscura pseud... 33 7.0
tr|Q5QBM4|Q5QBM4_9DIPT Putative uncharacterized protein (Fragmen... 33 9.1
tr|A4D1N7|A4D1N7_HUMAN Plexin A4 OS=Homo sapiens GN=PLXNA4 PE=4 ... 33 9.1

>tr|A7NWP8|A7NWP8_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020009001
PE=4 SV=1
Length = 244

Score = 42.0 bits (97), Expect = 0.015
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -2

Query: 280 SAGAYG--SLSWSVRHCFEEFLTLDGSYLQEKLISILQNQPVIEPGTRAILEKYYYLESL 107
SA ++G S S+ C + LDGS +Q++L +I+ N+ P ++ ++Y E +
Sbjct: 67 SAVSFGLWRFSRSLDSCLAHIMALDGSRMQKELATIIVNKYQDNPWRMQLISNHFYSEKV 126

Query: 106 YDDSGQGTSDIALRKREVLGVS 41
+DDS + R R G S
Sbjct: 127 FDDSTSDKPKLRWRHRNFFGDS 148


>tr|Q4RF76|Q4RF76_TETNG Chromosome 14 SCAF15120, whole genome
shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00035448001 PE=4 SV=1
Length = 153

Score = 38.5 bits (88), Expect = 0.17
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1

Query: 344 SLWINRKSAAYAKAGWNLC--FCVCRCLWVSVLVCQTLL 234
S W+ R + GW+ C +CVC C+ V V VC++ L
Sbjct: 92 SWWLQRHETCFTSGGWSCCSCWCVCVCVCVCVCVCESTL 130


>tr|A9UVX7|A9UVX7_MONBE Predicted protein OS=Monosiga brevicollis
GN=24276 PE=4 SV=1
Length = 384

Score = 37.4 bits (85), Expect = 0.37
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1

Query: 356 HTLRSL---WINRKSAAYAKAGWNLCFCVCRCLWVSVLVC 246
HT SL W R +A AG +C CVC C+ V V VC
Sbjct: 208 HTTLSLSCSWPERNTACLMTAGLEVCVCVCECVCVCVCVC 247


>tr|Q5YZG2|Q5YZG2_NOCFA Putative hydrolase OS=Nocardia farcinica
GN=NFA_15830 PE=4 SV=1
Length = 290

Score = 33.9 bits (76), Expect = 4.1
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2

Query: 331 IGRVPLMPKLVGTFAFASAGAYGSLSWSVRHCFEEFLTLDGSYLQEKLISILQNQPVIEP 152
+G + P V FA ++ A+G+ +W R F F TL +L+++ P+
Sbjct: 109 LGFLHRYPHRVRRFALLNSRAHGTFTWPYRLLFGAFTTLASHRATRRLLTVRAMYPLHRW 168

Query: 151 GTRAILEKYYYLESLYDD 98
G R + + L DD
Sbjct: 169 GLRGYVRNGSFSPGLLDD 186


>tr|B4GAI3|B4GAI3_DROPE GL11385 OS=Drosophila persimilis GN=GL11385
PE=4 SV=1
Length = 376

Score = 33.9 bits (76), Expect = 4.1
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Frame = -2

Query: 292 FAFASAGAYGSLSWSVRHCFEEFLTLDGSYLQEKLISILQNQP----------------- 164
FA A + G+L + + D Y + +S+ NQP
Sbjct: 137 FACARSHRRGALYTLIEESGVDISYRDELYRTARDVSLQANQPNNAAEIDRYILAQAAIG 196

Query: 163 VIEPGTRAILEKYYYLESLYDDSGQGTSD-IALRKREVLGVSLEKPR 26
+EP + L+ Y ++ + D+SGQ D +A R+ E LG LEK R
Sbjct: 197 QVEPFDQLALQGYDHILDIEDESGQSIGDVVATRQHEALGKFLEKLR 243


>tr|B6R4X5|B6R4X5_9RHOB ABC-3 protein OS=Pseudovibrio sp. JE062
GN=PJE062_164 PE=4 SV=1
Length = 411

Score = 33.5 bits (75), Expect = 5.3
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = -2

Query: 205 YLQEKLISILQNQPVIEPGTRAILEKYYYLESLYDDSGQGTSDIALRKRE 56
+L++ L++I N+PV+EP TR+IL + ++ + +G S+ L +R+
Sbjct: 304 HLRQGLLAIAHNEPVLEPLTRSILRRGGFMSGDGQPTVKGQSEARLIERD 353


>tr|A9V4X3|A9V4X3_MONBE Predicted protein OS=Monosiga brevicollis
GN=27307 PE=4 SV=1
Length = 840

Score = 33.5 bits (75), Expect = 5.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1

Query: 335 INRKSAAYAKAGWNLCFCVCRCLWVSVLVC 246
++R + AY N+C CVC C+ V V VC
Sbjct: 110 LHRPANAYVNVNVNVCVCVCVCVCVCVCVC 139


>tr|A9V250|A9V250_MONBE Predicted protein OS=Monosiga brevicollis
GN=26358 PE=3 SV=1
Length = 1395

Score = 33.5 bits (75), Expect = 5.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = -1

Query: 380 RSLHSSWQHTLRSLWINRKSAAYAKAG-----WNLCFCVCRCLWVSVLVC 246
R L ++ LRSL RK + +A A ++C CVC C+ V V VC
Sbjct: 904 RELRMYLRNVLRSLTRERKFSMFATAADPKSLMHVCVCVCVCVCVCVCVC 953


>tr|Q291M8|Q291M8_DROPS GA15734 OS=Drosophila pseudoobscura
pseudoobscura GN=GA15734 PE=4 SV=2
Length = 376

Score = 33.1 bits (74), Expect = 7.0
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Frame = -2

Query: 292 FAFASAGAYGSLSWSVRHCFEEFLTLDGSYLQEKLISILQNQP----------------- 164
FA A + G+L + + D Y + +S+ NQP
Sbjct: 137 FACARSHRRGALYTLIEESGVDISYRDELYRTARDVSLQANQPNNAAEIDRYILAQAAIG 196

Query: 163 VIEPGTRAILEKYYYLESLYDDSGQGTSD-IALRKREVLGVSLEKPR 26
+EP + L+ Y ++ + D+SGQ D +A R E LG LEK R
Sbjct: 197 QVEPFDQLALQGYDHILDIEDESGQSIGDVVATRHHEALGEFLEKLR 243


>tr|Q5QBM4|Q5QBM4_9DIPT Putative uncharacterized protein (Fragment)
OS=Culicoides sonorensis PE=2 SV=1
Length = 460

Score = 32.7 bits (73), Expect = 9.1
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -2

Query: 250 SVRHCFEEFLTLDGSYLQEKLISILQNQPVIEPGTRAILEKYYYLESLYDDSGQGTSDIA 71
++ H FEE +G+Y E L Q+ P+ K+ YL +Y + Q T ++
Sbjct: 177 AIPHLFEEKEDNEGNYPDEPLSGNCQDDPL----------KHCYLNHIYTQNYQETVEMV 226

Query: 70 LRKREVLGVSLEKPR 26
+ REVL PR
Sbjct: 227 YQWREVLDSYKNSPR 241