BP917735
Clone id YMU001_000104_G07
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GATCAATAGTCAAAACCACATTATATTATTGGTTCAAAGTTACATACAAATTATTAACTT
GAAGCATACTCATCATCTATGAAGAGATGCCTTCTTCGAGGCCTATCTTTTGGACGACCA
TAGTAACGTGGGTCCAATGTCATGCATCTCGCCTCCACCTCGATGTATTCAAGTAATGCA
CTCATGTCGCTCGTTGGATGACTCTACATATCCATAAGGTGCATGATGCAAAACTACCAT
ATGTCGATAAATAATCAACTGAGATGCTCTGCAAAATCTCTCAACCCAAAATATTGTGTC
TCCTTTGTGGAGCAAACAATCGGCATCGAATAACCTTGCAGTGAGTTCTTAAGGCTGAAC
AACTGATAGCCAATAATCAAGCAGTTGCTAGTTCCTCATTTACTGCAACTTCATGGAGAA
AAAACCCGATAGCATGGTACCATTCATGGGGTGAATAACTA
■■Homology search results ■■ -
sp_hit_id B2LMI2
Definition sp|B2LMI2|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta'' OS=Guizotia abyssinica
Align length 44
Score (bit) 29.6
E-value 6.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917735|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_G07.
(461 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|B2LMI2|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta''... 30 6.5
sp|A6NNF0|YK018_HUMAN Putative TRIM49-like protein ENSP000003530... 29 8.5

>sp|B2LMI2|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta''
OS=Guizotia abyssinica GN=rpoC2 PE=3 SV=1
Length = 1381

Score = 29.6 bits (65), Expect = 6.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2

Query: 17 HIILLVQSYIQIINLKHTHHL*RDAFFEAYLLDDHSNV-GPMSC 145
H +LV +Y+Q+ NLKH + + YLLD++ + P SC
Sbjct: 999 HNKILVTNYLQLDNLKHIFQI-----LKYYLLDENGKIYNPYSC 1037


>sp|A6NNF0|YK018_HUMAN Putative TRIM49-like protein ENSP00000353052
OS=Homo sapiens PE=5 SV=3
Length = 361

Score = 29.3 bits (64), Expect = 8.5
Identities = 18/84 (21%), Positives = 41/84 (48%)
Frame = +3

Query: 78 YEEMPSSRPIFWTTIVTWVQCHASRLHLDVFK*CTHVARWMTLHIHKVHDAKLPYVDK*S 257
++++P F TW + + +HL K +AR +L + + ++ + +
Sbjct: 43 WQDIPILTQCFECMKTTWQRNLKTNIHL---KQMASLARKASLWLFLSSEEQMCGTHRET 99

Query: 258 TEMLCKISQPKILCLLCGANNRHR 329
++ C++ + +LCLLC ++ HR
Sbjct: 100 KKIFCEVDR-SLLCLLCSSSQEHR 122


tr_hit_id Q0FKF8
Definition tr|Q0FKF8|Q0FKF8_9RHOB Putative uncharacterized protein OS=Roseovarius sp. HTCC2601
Align length 31
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917735|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_G07.
(461 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0FKF8|Q0FKF8_9RHOB Putative uncharacterized protein OS=Roseo... 34 3.2

>tr|Q0FKF8|Q0FKF8_9RHOB Putative uncharacterized protein
OS=Roseovarius sp. HTCC2601 GN=R2601_18618 PE=4 SV=1
Length = 845

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -1

Query: 182 SALLEYIEVEARCMTLDPRYYGRPKDRPRRR 90
+AL E + + R +TLDPRY G P+ PR R
Sbjct: 429 AALAESVGLSPRRLTLDPRYMGAPEQEPRDR 459