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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917628
Clone id YMU001_000103_D04
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGCAACGTGAATAATCCACCTCAAATTGCAGGTTTTGAAAGTACTCACTTTTGTGCGA
GTGAAAGAAAATCATCCATCCCACTCTGCTCAGTCTTATCATGGAAACTAATGCCAAAAT
TGTTTCCACATAACACGATGACAACCCATCTCAGATGGTTCGCGAGTTCTCAATTTGAAA
GGGAAAAAAAAAACAAAACTGGTTGAAAAACTCAATGCCAAATCTGGCCTATACCTTGCC
CTCGAGAACACACATCCTTACAGTAGGGCATTTTACACAGCGATTGCTATTAAAGGCTTC
CATGACCTCTTCTTAACTATCTGCAAATTTACACCTTTCGGCAAGAAGCCCCGCCTTGGC
TAGGGTCAAATGACAACAGAACCACCTCGTATGCATGTATATTCCGCCTTTCCGAAGCTT
AGCTGAGAGATAAGTGCAGGTGAAACAAGAATCACCTGCACAGCAAATGCTATCTAGAAA
CCACACTTCCATTTTGTAGAGGCTTCAACTTCTCCACAAAAGA
■■Homology search results ■■ -
sp_hit_id Q9VKH0
Definition sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit 8 OS=Drosophila melanogaster
Align length 45
Score (bit) 31.6
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917628|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_D04.
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit ...    32   2.4  
sp|Q17QV9|STK40_BOVIN Serine/threonine-protein kinase 40 OS=Bos ...    31   4.1  

>sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit 8
           OS=Drosophila melanogaster GN=CG6488 PE=1 SV=1
          Length = 570

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +3

Query: 39  ESTHFCASERKSSIPLCSVLSWKLMPKL-------FPHNTMTTHL 152
           E   F  SER++ + LCS L++ L+P +       FP  ++T HL
Sbjct: 471 EQQAFAGSEREAFVRLCSCLAYDLVPYIQRCIHGVFPPQSLTVHL 515


>sp|Q17QV9|STK40_BOVIN Serine/threonine-protein kinase 40 OS=Bos
           taurus GN=STK40 PE=2 SV=1
          Length = 436

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -2

Query: 426 SAKLRKGGIYMHTRWFCCHLTLAKAGLLAERCKFADS*EEVMEAFNSNRCVKCPTVRMCV 247
           S + R+G + +HT +    L   + G++     F D   EV+E   SNR VK    R+C+
Sbjct: 80  SQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEVVEDAESNRMVKKMKKRICL 139

Query: 246 L 244
           +
Sbjct: 140 V 140
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917628|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_D04.
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******