BP917594
Clone id YMU001_000102_H02
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACTGCCCGGGCCGGAGTGCCTGGGCGGCCGGACCAATGTGGACTGCATGCCACACTAATA
TATTGGTCCTCATTGAAGGGCAACCTCACCAGTCTCACGGTTGGGTGGAGAGCAGTTGTT
CTACCCCTCTCATGTGTAGTGTGTGTTGAGTGCATGCCCGGAGCGGCATGGCTATGCCCG
TAGTGGCGTAGTGCATGCGTTCGTGTAGTCGTAACATGCATTTGACATTGGTATCAGAGC
CGTGTCTTGGTTTGGGAGCGGCAAGACCGTTGTATTTCATTACGTACACACACTCCACTC
ATCAAGTCTCTCTCTTTCTCTCTCAAGCACAATTAAACCATTATTATCATTATCATTTAG
CAAATTATTACAAGCTTTCATTACGTACACACACTCCACTCATCAAGTCTCTCTCTTTCT
CTCTCAAGCACAATTAAATCATTATTATCATTACCATTCACTGTAGTAGCCACAGGACAC
ATGCGTCCAACCTTCCACCGGCACACATGCTACATTCAACAAGGCAAGTT
■■Homology search results ■■ -
sp_hit_id Q80W93
Definition sp|Q80W93|HYDIN_MOUSE Hydrocephalus-inducing protein OS=Mus musculus
Align length 89
Score (bit) 35.4
E-value 0.17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917594|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_H02.
(530 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q80W93|HYDIN_MOUSE Hydrocephalus-inducing protein OS=Mus musc... 35 0.17
sp|Q726E5|Y3208_DESVH UPF0078 membrane protein DVU_3208 OS=Desul... 32 2.5
sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1 30 7.2
sp|P27918|PROP_HUMAN Properdin OS=Homo sapiens GN=CFP PE=1 SV=2 30 7.2
sp|A8AI11|MDTH_CITK8 Multidrug resistance protein mdtH OS=Citrob... 30 9.4

>sp|Q80W93|HYDIN_MOUSE Hydrocephalus-inducing protein OS=Mus musculus
GN=Hydin PE=2 SV=1
Length = 5099

Score = 35.4 bits (80), Expect = 0.17
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = -1

Query: 272 QRSCRSQTKTRL*YQC----QMHVTTTRTHALRHYGHSHAAPGMHST-HTTHERGRTTAL 108
QRSCR TK +L + + RTH ++ SH H+ HE G +T L
Sbjct: 1568 QRSCRKLTKVQLPEYILDFGYIVLGDVRTHIVKITNTSHFPVSFHAEKQVLHETGFSTEL 1627

Query: 107 HPTVRLVRLPFNEDQYISVACSPHWSGRP 21
R+ LP+ E + V C P + P
Sbjct: 1628 D---RVKNLPYYETETFEVRCDPQGANLP 1653


>sp|Q726E5|Y3208_DESVH UPF0078 membrane protein DVU_3208
OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB 8303) GN=DVU_3208 PE=3 SV=1
Length = 327

Score = 31.6 bits (70), Expect = 2.5
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1

Query: 40 GLHATLIYWSSLKGNLTSLTVGWRAVVLPLSCVVCVECMPGAAWLCP*WRSACVRVVVTC 219
G+ L +W + + L V WR+ + L + V MP L W+ + +VV
Sbjct: 111 GVFLPLAFWPLVLSGIACLAVIWRSGFVSLGSLTLVTAMPAMLLLGGHWKLVPLALVVMV 170

Query: 220 I*HW 231
+ +W
Sbjct: 171 LVYW 174


>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1
Length = 5147

Score = 30.0 bits (66), Expect = 7.2
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Frame = +3

Query: 3 CPGRSAWAAGPMWTACHTNILVLIEGQPHQSHGWVESSCSTPLMCSVC*VHARSGMAMPV 182
CP W++ WT C +LV Q ++ G C+ H R +
Sbjct: 4362 CPEECVWSSWSSWTRCSCRVLV---QQRYRHQGPASRGARAGAPCTRLDGHFRPCL---- 4414

Query: 183 VA*CMR-SCSRNMHLTLVSEPCLGLGAARPLYFITYTHSTHQV 308
++ C SC+ PC GL A TH +HQ+
Sbjct: 4415 ISNCSEDSCTPPFEFHACGSPCAGLCA---------THLSHQL 4448


>sp|P27918|PROP_HUMAN Properdin OS=Homo sapiens GN=CFP PE=1 SV=2
Length = 469

Score = 30.0 bits (66), Expect = 7.2
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +3

Query: 3 CPGRSAWAAGPMWTACHTNILVLIEGQPHQSHGWVESSCSTP 128
CP AWA WT C + G PH+ CS P
Sbjct: 190 CPTHGAWATWGPWTPCSAS----CHGGPHEPKETRSRKCSAP 227


>sp|A8AI11|MDTH_CITK8 Multidrug resistance protein mdtH
OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
/ SGSC4696) GN=mdtH PE=3 SV=1
Length = 402

Score = 29.6 bits (65), Expect = 9.4
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +1

Query: 25 RPDQCGLHATLIYWSSLKGNLTSLTVG-WRA-----VVLPLSCVVCVECMPGAAWLCP*W 186
RP+Q G +L+ G +T +G W +V V+ V C AWL P W
Sbjct: 129 RPEQRGRFFSLLMMQDSAGAVTGALLGSWLLQYDFRLVCATGAVLFVLCAAFNAWLLPAW 188

Query: 187 RSACVRVVV 213
+ + V++ V
Sbjct: 189 KLSTVKIPV 197


tr_hit_id B6NYJ6
Definition tr|B6NYJ6|B6NYJ6_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 67
Score (bit) 34.3
E-value 4.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917594|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_H02.
(530 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6NYJ6|B6NYJ6_BRAFL Putative uncharacterized protein OS=Branc... 34 4.0
tr|A8NL29|A8NL29_COPC7 Putative uncharacterized protein OS=Copri... 33 9.0
tr|Q5KN54|Q5KN54_CRYNE Expressed protein (Putative uncharacteriz... 28 9.1

>tr|B6NYJ6|B6NYJ6_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_100656 PE=4 SV=1
Length = 275

Score = 34.3 bits (77), Expect = 4.0
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -1

Query: 200 THALRHYGHSHAAPGMHSTHTTHERGRTTALHPTVRLVRLPFNEDQYI--SVACSPHWSG 27
TH+ H GHS P MH+ T + T + + ++ P + QY+ S ACS H +G
Sbjct: 144 THSAGHTGHSTWTPAMHAAPT-----KLTTIPGLLLCIQYPLSWPQYLDSSHACSTHSAG 198

Query: 26 R-PGTPA 9
TPA
Sbjct: 199 HSTWTPA 205


>tr|A8NL29|A8NL29_COPC7 Putative uncharacterized protein
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
9003) GN=CC1G_10472 PE=4 SV=1
Length = 2629

Score = 33.1 bits (74), Expect = 9.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1

Query: 197 HALRHYGHSHAAPGMHSTHTTHERGRTTALHPTVRLVR-LPFNEDQYISVACSPHWSG 27
HA H+ H H P H +H+R R + P+VR +R + + + A S W G
Sbjct: 667 HAHSHHQHQHQPPNPPYLHYSHQRERRPSEAPSVRSIRSIAHSVRSSGTAATSSSWEG 724


>tr|Q5KN54|Q5KN54_CRYNE Expressed protein (Putative uncharacterized
protein) OS=Cryptococcus neoformans GN=CNA07680 PE=4
SV=1
Length = 538

Score = 27.7 bits (60), Expect(2) = 9.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2

Query: 262 AAPKPRHGSDTNVKCM 215
AAPKPRH TN++C+
Sbjct: 17 AAPKPRHCRQTNMECL 32



Score = 23.9 bits (50), Expect(2) = 9.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1

Query: 188 RHYGHSHAAPGMHSTHTT 135
+H H PGM STH T
Sbjct: 42 KHSAPQHRLPGMDSTHRT 59