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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917573
Clone id YMU001_000102_E11
Library
Length 336
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGAGGGCTGATGTACGCGGCGGCACGTGGGGGGGGAGGGAAGCGCGCGTGCGAGAGAGA
GAGATTTGCACCCCACAACCACGTCCTCACCTGACACAAAACGCCTTCCAAGGGGCAAAA
AAAAAAAATCAAACTCCCAAGTCCCTGCTGCTCCCACATGGCACCCTCCTGACTCCTCAA
TATCCGACATCCTCAATTATCAGTTTATAGGCGCCAATCATACAGTTTCTCAAACAGTCG
CCTCTCTACAGCTGTGTGTAGACACTAAATAAGTCTCCTCCTTTCGCACGCTGAGTGAAG
GGTGCAGCGATCAATATGGAAGATGTAGTAATGCAG
■■Homology search results ■■ -
sp_hit_id P23881
Definition sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
Align length 47
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917573|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_E11.
         (336 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein ...    33   0.44 
sp|Q8IX29|FBX16_HUMAN F-box only protein 16 OS=Homo sapiens GN=F...    32   0.76 
sp|P38165|RTG3_YEAST Retrograde regulation protein 3 OS=Saccharo...    32   1.3  
sp|Q5ZMV2|SAS6_CHICK Spindle assembly abnormal protein 6 homolog...    31   1.7  
sp|O23372|ATXR3_ARATH Probable histone-lysine N-methyltransferas...    31   2.2  
sp|Q02777|THA_RANCA Thyroid hormone receptor alpha OS=Rana cates...    30   2.9  
sp|Q8WV28|BLNK_HUMAN B-cell linker protein OS=Homo sapiens GN=BL...    30   2.9  
sp|Q9QZM9|FBX16_MOUSE F-box only protein 16 OS=Mus musculus GN=F...    30   3.8  
sp|P18115|THAB_XENLA Thyroid hormone receptor alpha-B OS=Xenopus...    29   6.4  
sp|P15204|THAA_XENLA Thyroid hormone receptor alpha-A OS=Xenopus...    29   6.4  
sp|Q9H3S7|PTN23_HUMAN Tyrosine-protein phosphatase non-receptor ...    29   6.4  
sp|P50472|GSTX2_MAIZE Probable glutathione S-transferase BZ2 OS=...    29   6.4  
sp|Q0KIC3|Y1531_DROME Uncharacterized protein CG31531 OS=Drosoph...    29   8.4  

>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3
           OS=Mus musculus GN=Tcea3 PE=1 SV=3
          Length = 347

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 18  RRHVGGEGSARARERDLHPTTTSSPDTKRLPRGKKKKSNSQVPAAPT 158
           R+  GGE   R    D   +TTSSP    L R    KS  + P  P+
Sbjct: 116 RKKGGGEPKTRRDSVDSRSSTTSSPKRPSLERSNSSKSKVETPTTPS 162


>sp|Q8IX29|FBX16_HUMAN F-box only protein 16 OS=Homo sapiens
           GN=FBXO16 PE=2 SV=1
          Length = 292

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = +3

Query: 63  DLHPTTTSSPDTKRLPRGK-------KKKSNSQVPAAPTWHPPDSSISDILNYQFI 209
           D+   T++SP+ K+ P          +KK+NS   A P W   D   +DI+ + ++
Sbjct: 180 DVQLVTSNSPEEKQSPLSAFRSSSSLRKKNNSGEKALPPWRSSDKHPTDIIRFNYL 235


>sp|P38165|RTG3_YEAST Retrograde regulation protein 3
           OS=Saccharomyces cerevisiae GN=RTG3 PE=1 SV=2
          Length = 486

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +3

Query: 30  GGEGSARARERDLHPTTTSSPDTKRLPRGKKKKSNSQVPAAPTWHPPDSSISDILNYQF 206
           GGE  A+  E+  +  T +S D   L  G + +SNSQ P A T +    S S  L+  F
Sbjct: 53  GGETPAQQHEKLSYINTHNSNDNNNL-MGSQARSNSQTPTASTIYEEAESQSSYLDDMF 110


>sp|Q5ZMV2|SAS6_CHICK Spindle assembly abnormal protein 6 homolog
           OS=Gallus gallus GN=SASS6 PE=2 SV=1
          Length = 640

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 30/97 (30%)
 Frame = +1

Query: 34  GREARVREREICTPQPRPHLTQNAFQGAK-----------------------KKNQTPKS 144
           G+  R++E+E+C  Q +   T    + +K                       K+ +TP S
Sbjct: 438 GQSLRMKEQEVCKLQEQLETTIQKLEESKQLLKTNENVITWLNKQLNEVQMLKRMETPSS 497

Query: 145 L-------LLPHGTLLTPQYPTSSIISL*APIIQFLK 234
           +       L PHG L  P +P+S I    +P   F K
Sbjct: 498 MHGGIRTALSPHGMLERPSFPSSGISHTISPFYAFQK 534


>sp|O23372|ATXR3_ARATH Probable histone-lysine N-methyltransferase
           ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=1 SV=1
          Length = 2351

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 15  TRRHVGGEGSARARERDLHPTTTSSPDTKRLPRGKKKKSNSQVPAAPTWHPPDSS 179
           +R H   + S  ARER  +    SS   KR PR ++     + P+   W P D S
Sbjct: 399 SRYHENRDRSPYARERSPYIFEKSSHARKRSPRDRRHHDYRRSPSYSEWSPHDRS 453


>sp|Q02777|THA_RANCA Thyroid hormone receptor alpha OS=Rana
           catesbeiana GN=thra PE=2 SV=1
          Length = 418

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 84  SSPDTKRLPRGKKKKSNSQVPAAPTWHPPDSSISDILNYQFIGANHTVSQTVASLQLCVD 263
           S PD KR P GK+K+ NSQ     +    DSS+S +L+  +I +  T  +      +C D
Sbjct: 12  SEPDEKRWPDGKRKRKNSQC-MGKSGMSGDSSVS-LLSAGYIPSYLTKDEPCV---VCSD 66

Query: 264 TK*VSSFRTLS-EGCSDQYGR 323
                 +R ++ EGC   + R
Sbjct: 67  KATGYHYRCITCEGCKGFFRR 87


>sp|Q8WV28|BLNK_HUMAN B-cell linker protein OS=Homo sapiens GN=BLNK
           PE=1 SV=2
          Length = 456

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 57  ERDLHPTTTSSPDTKRLPR-GKKKKSNSQVPAAP 155
           E  +HPT +SSP  ++ P   +  K NS  PA+P
Sbjct: 187 ENYIHPTESSSPPPEKAPMVNRSTKPNSSTPASP 220


>sp|Q9QZM9|FBX16_MOUSE F-box only protein 16 OS=Mus musculus
           GN=Fbxo16 PE=2 SV=1
          Length = 334

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +3

Query: 63  DLHPTTTSSPDTKRLPR-------GKKKKSNSQVPAAPTWHPPDSSISDILNYQFI 209
           D+ P   +SPD K+ P          +KK+N      P W   D   +DI+ + ++
Sbjct: 180 DVQPIPGNSPDEKQSPSLAFRSSSSLRKKNNPGEKELPPWRSSDKHPTDIIRFNYL 235


>sp|P18115|THAB_XENLA Thyroid hormone receptor alpha-B OS=Xenopus
           laevis GN=thra-B PE=2 SV=2
          Length = 418

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 84  SSPDTKRLPRGKKKKSNSQ 140
           S PD KR P GK+K+ NSQ
Sbjct: 12  SEPDEKRWPDGKRKRKNSQ 30


>sp|P15204|THAA_XENLA Thyroid hormone receptor alpha-A OS=Xenopus
           laevis GN=thra-A PE=1 SV=2
          Length = 418

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 84  SSPDTKRLPRGKKKKSNSQ 140
           S PD KR P GK+K+ NSQ
Sbjct: 12  SEPDEKRWPDGKRKRKNSQ 30
tr_hit_id B7ZYV0
Definition tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 36
Score (bit) 44.7
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917573|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_E11.
         (336 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.002
tr|B6SL14|B6SL14_MAIZE ACR4 OS=Zea mays PE=2 SV=1                      45   0.002
tr|B4G0N4|B4G0N4_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.002
tr|Q75IY1|Q75IY1_ORYSJ Os03g0413100 protein OS=Oryza sativa subs...    40   0.058
tr|Q75IY0|Q75IY0_ORYSJ Putative ACT domain containing protein, A...    40   0.058
tr|A3AJ25|A3AJ25_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.058
tr|A2XHY2|A2XHY2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|A7P5V9|A7P5V9_VITVI Chromosome chr4 scaffold_6, whole genome ...    39   0.13 
tr|A7P2B7|A7P2B7_VITVI Chromosome chr1 scaffold_5, whole genome ...    39   0.13 
tr|A5BD32|A5BD32_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A9NND6|A9NND6_PICSI Putative uncharacterized protein OS=Picea...    38   0.22 
tr|A7QUU8|A7QUU8_VITVI Chromosome chr1 scaffold_180, whole genom...    38   0.22 
tr|A5C2B4|A5C2B4_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|A5AWQ7|A5AWQ7_VITVI Putative uncharacterized protein (Chromos...    38   0.22 
tr|A7P9X8|A7P9X8_VITVI Chromosome chr14 scaffold_9, whole genome...    38   0.29 
tr|A7PHK3|A7PHK3_VITVI Chromosome chr17 scaffold_16, whole genom...    37   0.50 
tr|A5B662|A5B662_VITVI Putative uncharacterized protein OS=Vitis...    37   0.50 
tr|Q9LNA5|Q9LNA5_ARATH F5O11.14 (At1g12420) (Putative uncharacte...    37   0.65 
tr|Q9LQB5|Q9LQB5_ARATH F4N2.2 OS=Arabidopsis thaliana PE=4 SV=1        36   0.84 
tr|Q8LJW3|Q8LJW3_ARATH ACR4 (At1g69040) OS=Arabidopsis thaliana ...    36   0.84 
tr|Q8GWT8|Q8GWT8_ARATH Putative uncharacterized protein At1g6904...    36   0.84 
tr|Q7XVN5|Q7XVN5_ORYSJ Os04g0391500 protein OS=Oryza sativa subs...    36   0.84 
tr|Q3ECF7|Q3ECF7_ARATH Uncharacterized protein At1g69040.2 OS=Ar...    36   0.84 
tr|Q01LC6|Q01LC6_ORYSA OSIGBa0145N07.1 protein OS=Oryza sativa G...    36   0.84 
tr|B6SV85|B6SV85_MAIZE ACR4 OS=Zea mays PE=2 SV=1                      36   0.84 
tr|A7QK86|A7QK86_VITVI Chromosome chr2 scaffold_112, whole genom...    36   0.84 
tr|A5ADW0|A5ADW0_VITVI Putative uncharacterized protein OS=Vitis...    36   0.84 
tr|A3ATA6|A3ATA6_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|A2XSU7|A2XSU7_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|Q9ZPQ8|Q9ZPQ8_ARATH Putative uridylyl transferase OS=Arabidop...    36   1.1  

>tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 440

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID C ++S  ER+R+I CL  A+ERR+ E L
Sbjct: 296 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 331


>tr|B6SL14|B6SL14_MAIZE ACR4 OS=Zea mays PE=2 SV=1
          Length = 458

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID C ++S  ER+R+I CL  A+ERR+ E L
Sbjct: 314 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 349


>tr|B4G0N4|B4G0N4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 458

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID C ++S  ER+R+I CL  A+ERR+ E L
Sbjct: 314 YYIRHIDGCPVNSEAERKRIIQCLEAAIERRVSEGL 349


>tr|Q75IY1|Q75IY1_ORYSJ Os03g0413100 protein OS=Oryza sativa subsp.
           japonica GN=OsACR7 PE=2 SV=1
          Length = 452

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID   ++S  ER+R+I CL  A+ERR+ E L
Sbjct: 307 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 342


>tr|Q75IY0|Q75IY0_ORYSJ Putative ACT domain containing protein,
           ACR4, with alternative splicing forms (ACT domain
           containing protein, putative, expressed) OS=Oryza sativa
           subsp. japonica GN=LOC_Os03g29980 PE=4 SV=1
          Length = 374

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID   ++S  ER+R+I CL  A+ERR+ E L
Sbjct: 229 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 264


>tr|A3AJ25|A3AJ25_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010797 PE=4 SV=1
          Length = 455

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID   ++S  ER+R+I CL  A+ERR+ E L
Sbjct: 310 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 345


>tr|A2XHY2|A2XHY2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12028 PE=4 SV=1
          Length = 455

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID   ++S  ER+R+I CL  A+ERR+ E L
Sbjct: 310 YYIRHIDGSPVNSEAERQRVIQCLEAAIERRVSEGL 345


>tr|A7P5V9|A7P5V9_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032680001
           PE=4 SV=1
          Length = 481

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFE 229
           Y+I HID CT++S  E+  ++ CL  A+ERR+ E
Sbjct: 326 YFIRHIDGCTVNSEGEKEHVVKCLEAAIERRVCE 359


>tr|A7P2B7|A7P2B7_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029995001
           PE=4 SV=1
          Length = 432

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID   + S  ER+R+I CL  A+ERR+ E L
Sbjct: 298 YYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGL 333


>tr|A5BD32|A5BD32_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015490 PE=4 SV=1
          Length = 416

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = -1

Query: 330 YYIFHIDRCTLHSACERRRLI*CLHTAVERRLFEKL 223
           YYI HID   + S  ER+R+I CL  A+ERR+ E L
Sbjct: 282 YYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGL 317