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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917560
Clone id YMU001_000102_D07
Library
Length 395
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAATAAAATTCACGCGTACAAACGTATATGGAGATAGAGAGTTTCTGTTTGATTCCAATA
GCTTATGTGAATGTGGACCATGGTACACAAGTCTGTGGAAATTGCACTCACAACTATGGG
CAATTACAGCCCCACTTTGTGTGTGTGTGTGTGATAATTGTCGATTGCATGGGATAGCAT
AACCCCATCAAACCACTGCATGGTGGAGGAGAGTATACAAAGCTGTGTAGGTGCCAAGAG
CCCAAAAGAGCTTCAAAGTCCATCCGCAACCCATATTTTACCCCCACTCCTAAATTTCTT
AGCCCAACTTACCTCTCCTATCCACACACAGGCATACCTCAACGTTCCCTTCGAATACTC
GTGCACATGATAGATGCACCTACACACACACTGGT
■■Homology search results ■■ -
sp_hit_id Q8JZS9
Definition sp|Q8JZS9|RM48_MOUSE 39S ribosomal protein L48, mitochondrial OS=Mus musculus
Align length 75
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917560|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_D07.
         (395 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8JZS9|RM48_MOUSE 39S ribosomal protein L48, mitochondrial OS...    31   2.2  
sp|A2AG50|MA7D2_MOUSE MAP7 domain-containing protein 2 OS=Mus mu...    30   3.7  
sp|Q8BJ66|KAZD1_MOUSE Kazal-type serine protease inhibitor domai...    30   3.7  
sp|O09043|NAPSA_MOUSE Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1      30   4.9  
sp|O47475|COX3_LOLBL Cytochrome c oxidase subunit 3 OS=Loligo bl...    30   4.9  
sp|Q9SSG5|BORL3_ARATH Putative boron transporter-like protein 3 ...    30   4.9  
sp|Q68SA9|ATS7_MOUSE A disintegrin and metalloproteinase with th...    25   6.0  
sp|Q1EHB3|ATS7_RAT A disintegrin and metalloproteinase with thro...    25   6.0  
sp|Q9RKB9|TRI2_STRCO Putative tricorn protease homolog 2 OS=Stre...    29   8.3  
sp|Q8BGD7|NPAS4_MOUSE Neuronal PAS domain-containing protein 4 O...    29   8.3  
sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 O...    29   8.3  
sp|Q7SZQ0|MBOA7_DANRE Membrane-bound O-acyltransferase domain-co...    29   8.3  

>sp|Q8JZS9|RM48_MOUSE 39S ribosomal protein L48, mitochondrial
           OS=Mus musculus GN=Mrpl48 PE=2 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
 Frame = +1

Query: 178 HNPIKPLHGGGEYTKLCRCQEPKRASKSIR---------------NPYFTPTPKFLSPTY 312
           H   KP HG G Y  L + QEPK+    +                N + T     L+ +Y
Sbjct: 46  HYKTKPTHGIGRYRHLVKVQEPKKKKAKVELRAINVGTDYEYGVLNIHLTAYDMSLAESY 105

Query: 313 LSYPHTGIPQRSLRI 357
             Y H    + S+++
Sbjct: 106 AQYVHRLCNRLSIKV 120


>sp|A2AG50|MA7D2_MOUSE MAP7 domain-containing protein 2 OS=Mus
           musculus GN=Map7d2 PE=1 SV=1
          Length = 781

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
 Frame = +1

Query: 205 GGEYTKLCRCQEPKRASKSIRNPY--------FTPTPKFLSPTYLSYP 324
           GG  + L RC+ P+  SK + +P         +  +PK   PTYL  P
Sbjct: 311 GGHGSPLRRCEPPEDISKRLSSPVKSKITSKTYPQSPKTAKPTYLGSP 358


>sp|Q8BJ66|KAZD1_MOUSE Kazal-type serine protease inhibitor
           domain-containing protein 1 OS=Mus musculus GN=Kazald1
           PE=1 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
 Frame = +1

Query: 130 PHFVCVCVIIVDCMG*HNPIKPLHG--GGEYTKLCRCQEPKRASKSIRNPYFTPTPKFLS 303
           P  +CVC             +PL G  G  Y ++CR QE  RA          P P    
Sbjct: 129 PEPLCVC----------RSQRPLCGSDGRTYAQICRLQEAARARLDANLTVVHPGPCESE 178

Query: 304 PTYLSYPH 327
           P  LS PH
Sbjct: 179 PQILSQPH 186


>sp|O09043|NAPSA_MOUSE Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1
          Length = 419

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 178 HNPIKPLHGGGEYTKLCRCQEPKRASKSIRNPYFTPTPKFLSPTYLSYPHTGIPQRSLRI 357
           H  + PL+G  +  +L       R S S  NP F P  KF++  Y      G P ++  +
Sbjct: 35  HRILNPLNGWEQLAEL------SRTSTSGGNPSFVPLSKFMNTQYFGTIGLGTPPQNFTV 88

Query: 358 L 360
           +
Sbjct: 89  V 89


>sp|O47475|COX3_LOLBL Cytochrome c oxidase subunit 3 OS=Loligo
           bleekeri GN=COIII PE=3 SV=1
          Length = 259

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
 Frame = -3

Query: 372 YHVHEYSK----GTLRYACVWIGEVSWAKKFRSGGKIWVADGL*SSFGLLAPTQLCILSS 205
           +H+ EYS     G+L    + +G  SW   F + G I +  GL             +L +
Sbjct: 6   FHLVEYSPWPLTGSLGAMFLTVGLTSW---FHNHGFITMLLGL-----------FLVLMT 51

Query: 204 TMQWFDGVMLSHAIDNYHTHTHKVGL*LPIVVSAISTDLCTMVHIHISYWNQT 46
             QW+  ++       YHT    +G+ + +V+  I++++C       +Y++ +
Sbjct: 52  MFQWWRDIIRESTFQGYHTMKVSLGMRMGMVL-FITSEICFFFAFFWAYFHSS 103


>sp|Q9SSG5|BORL3_ARATH Putative boron transporter-like protein 3
           OS=Arabidopsis thaliana GN=At1g74810 PE=3 SV=1
          Length = 683

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 273 WVADGL*SSFGLLAPTQLCILSSTMQWFD-GVMLSHAIDNYHTHTHKVGL*LPIVVSAIS 97
           W+A GL S FG+LAPT     +S +     G  LSH  +            L  V +  S
Sbjct: 31  WIA-GLRSGFGILAPTTYVFFASALPVIAFGEQLSHDTERS----------LSTVETLAS 79

Query: 96  TDLCTMVH 73
           T LC ++H
Sbjct: 80  TALCGVIH 87


>sp|Q68SA9|ATS7_MOUSE A disintegrin and metalloproteinase with
            thrombospondin motifs 7 OS=Mus musculus GN=Adamts7 PE=1
            SV=2
          Length = 1657

 Score = 25.0 bits (53), Expect(2) = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 202  GGGEYTKLCRCQEPKRASKSIR 267
            GGGE  +L  C EP    +S+R
Sbjct: 1508 GGGEQQRLVTCPEPGLCEESLR 1529



 Score = 23.9 bits (50), Expect(2) = 6.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 72   CGPWYTSLWK 101
            C PWYTS W+
Sbjct: 1492 CLPWYTSSWR 1501


>sp|Q1EHB3|ATS7_RAT A disintegrin and metalloproteinase with
            thrombospondin motifs 7 OS=Rattus norvegicus GN=Adamts7
            PE=1 SV=1
          Length = 1595

 Score = 25.0 bits (53), Expect(2) = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 202  GGGEYTKLCRCQEPKRASKSIR 267
            GGGE  +L  C EP    +S+R
Sbjct: 1446 GGGEQQRLVTCPEPGLCEESLR 1467



 Score = 23.9 bits (50), Expect(2) = 6.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 72   CGPWYTSLWK 101
            C PWYTS W+
Sbjct: 1430 CLPWYTSSWR 1439


>sp|Q9RKB9|TRI2_STRCO Putative tricorn protease homolog 2
           OS=Streptomyces coelicolor GN=tri2 PE=3 SV=1
          Length = 1171

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +1

Query: 181 NPIKPLHGGGEYTKLCRCQEPKRASKSIRNPYFTPTPKFLSPTYLSYPHTGIPQRSLRIL 360
           +P  P   GG+ T+L R       +  +R+  F+P       T+L++ H GI +   +I 
Sbjct: 490 SPGTPATAGGQVTELIRS-----VNGPVRDLAFSP-----DGTWLTWSHPGIGRTLRQIK 539

Query: 361 VHMIDAPTHTL 393
           +  ID P  TL
Sbjct: 540 MARIDGPEGTL 550


>sp|Q8BGD7|NPAS4_MOUSE Neuronal PAS domain-containing protein 4
           OS=Mus musculus GN=Npas4 PE=1 SV=1
          Length = 802

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 173 DSITPSNHCMVEESIQSCVGAKSPKELQSPSATHILPPLLNFLAQLTSPIHT 328
           D +TP      ++ + S   A  P+ L SP+   + PP   F A L SP  T
Sbjct: 499 DQLTPCTSSFPDQLLPST--ATFPEPLGSPAHEQLTPPSTAFQAHLNSPSQT 548
tr_hit_id Q7U214
Definition tr|Q7U214|Q7U214_MYCBO POSSIBLE LIPOPROTEIN PEPTIDASE LPQM OS=Mycobacterium bovis
Align length 26
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917560|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_D07.
         (395 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7U214|Q7U214_MYCBO POSSIBLE LIPOPROTEIN PEPTIDASE LPQM OS=My...    33   9.2  
tr|P96265|P96265_MYCTU POSSIBLE LIPOPROTEIN PEPTIDASE LPQM OS=My...    33   9.2  
tr|A5TZE5|A5TZE5_MYCTA Putative lipoprotein peptidase LpqM OS=My...    33   9.2  
tr|A1KFP1|A1KFP1_MYCBP Possible lipoprotein peptidase lpqM OS=My...    33   9.2  
tr|A4KEA7|A4KEA7_MYCTU Lipoprotein peptidase lpqM OS=Mycobacteri...    33   9.2  
tr|A2VFA8|A2VFA8_MYCTU Lipoprotein peptidase lpqM OS=Mycobacteri...    33   9.2  
tr|A1QNJ2|A1QNJ2_MYCTF Lipoprotein peptidase lpqM OS=Mycobacteri...    33   9.2  
tr|Q7XDD1|Q7XDD1_ORYSJ Importin-beta N-terminal domain containin...    33   9.2  
tr|Q9P6V7|Q9P6V7_NEUCR Related to lethal(2) denticleless protein...    33   9.2  
tr|Q1K814|Q1K814_NEUCR Putative uncharacterized protein OS=Neuro...    33   9.2  

>tr|Q7U214|Q7U214_MYCBO POSSIBLE LIPOPROTEIN PEPTIDASE LPQM
           OS=Mycobacterium bovis GN=lpqM PE=4 SV=1
          Length = 498

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 LHGGGEYTKLCRCQEPKRASKSIRNP 273
           +HG G Y  L RC  P+R + S+R P
Sbjct: 1   MHGRGRYRPLVRCVRPRRVAASVRTP 26


>tr|P96265|P96265_MYCTU POSSIBLE LIPOPROTEIN PEPTIDASE LPQM
           OS=Mycobacterium tuberculosis GN=lpqM PE=4 SV=1
          Length = 498

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 LHGGGEYTKLCRCQEPKRASKSIRNP 273
           +HG G Y  L RC  P+R + S+R P
Sbjct: 1   MHGRGRYRPLVRCVRPRRVAASVRTP 26


>tr|A5TZE5|A5TZE5_MYCTA Putative lipoprotein peptidase LpqM
           OS=Mycobacterium tuberculosis (strain ATCC 25177 /
           H37Ra) GN=lpqM PE=4 SV=1
          Length = 498

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 LHGGGEYTKLCRCQEPKRASKSIRNP 273
           +HG G Y  L RC  P+R + S+R P
Sbjct: 1   MHGRGRYRPLVRCVRPRRVAASVRTP 26


>tr|A1KFP1|A1KFP1_MYCBP Possible lipoprotein peptidase lpqM
           OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
           GN=lpqM PE=4 SV=1
          Length = 498

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 LHGGGEYTKLCRCQEPKRASKSIRNP 273
           +HG G Y  L RC  P+R + S+R P
Sbjct: 1   MHGRGRYRPLVRCVRPRRVAASVRTP 26


>tr|A4KEA7|A4KEA7_MYCTU Lipoprotein peptidase lpqM OS=Mycobacterium
           tuberculosis str. Haarlem GN=TBHG_00415 PE=4 SV=1
          Length = 498

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 LHGGGEYTKLCRCQEPKRASKSIRNP 273
           +HG G Y  L RC  P+R + S+R P
Sbjct: 1   MHGRGRYRPLVRCVRPRRVAASVRTP 26


>tr|A2VFA8|A2VFA8_MYCTU Lipoprotein peptidase lpqM OS=Mycobacterium
           tuberculosis C GN=TBCG_00411 PE=4 SV=1
          Length = 498

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 LHGGGEYTKLCRCQEPKRASKSIRNP 273
           +HG G Y  L RC  P+R + S+R P
Sbjct: 1   MHGRGRYRPLVRCVRPRRVAASVRTP 26


>tr|A1QNJ2|A1QNJ2_MYCTF Lipoprotein peptidase lpqM OS=Mycobacterium
           tuberculosis (strain F11) GN=TBFG_00416 PE=4 SV=1
          Length = 498

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 196 LHGGGEYTKLCRCQEPKRASKSIRNP 273
           +HG G Y  L RC  P+R + S+R P
Sbjct: 1   MHGRGRYRPLVRCVRPRRVAASVRTP 26


>tr|Q7XDD1|Q7XDD1_ORYSJ Importin-beta N-terminal domain containing
           protein (Putative uncharacterized protein) OS=Oryza
           sativa subsp. japonica GN=LOC_Os10g33770 PE=4 SV=2
          Length = 929

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +2

Query: 158 LSIAWDSITPSNHCMVEESIQSCVGAKSPKELQSPSATHILPPLLNFLAQ-LTSPIHTQA 334
           L +++D    SN  ++E ++ S VGA S     +PS   ILPPL++ L + +++   T A
Sbjct: 490 LVMSYDDDWSSN--VLETAVCSLVGAFSKWIEAAPSELLILPPLVDILNKGMSTSEETAA 547

Query: 335 YLNVPFEYSC 364
             +V F+Y C
Sbjct: 548 AASVAFKYIC 557


>tr|Q9P6V7|Q9P6V7_NEUCR Related to lethal(2) denticleless protein
           OS=Neurospora crassa GN=68B2.190 PE=4 SV=1
          Length = 810

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 241 PKRASKSIRNPYFTPTP--KFLSPTYLSYPHTGIPQRSLRILVHMIDAPTHT 390
           P+ A+K  RNP  TP    +F +P  ++  H    QR+LR L   +   +HT
Sbjct: 35  PRSAAKERRNPSITPRKFRRFFTPRVIANNHPSASQRALRDLAGPLIERSHT 86


>tr|Q1K814|Q1K814_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU03668 PE=4 SV=1
          Length = 785

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 241 PKRASKSIRNPYFTPTP--KFLSPTYLSYPHTGIPQRSLRILVHMIDAPTHT 390
           P+ A+K  RNP  TP    +F +P  ++  H    QR+LR L   +   +HT
Sbjct: 35  PRSAAKERRNPSITPRKFRRFFTPRVIANNHPSASQRALRDLAGPLIERSHT 86