BP917445 |
Clone id |
YMU001_000100_H08 |
Library |
YMU01 |
Length |
374 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000100_H08. |
Accession |
BP917445 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AAAGGTTACGCTACCTTTACTAAATCTGGTAGGTGGCGTTTTTCAGCTTCAACGTAGAGG CTGGTTAAGACGCCAAGTGTTCTGGATGGCAAAACAAATTTTACAGGTGGGAATGGGTGA TGCCGTAGATGACTGGCTGGTCACCAAGGTGAGATGGTTAATAAGAGAAGATGTCGTTGC ATCGTCATTAAAATGGATCCAGGAGATACTTTGGCCGGGAGGTGTCTTTATCACTAAAAT AAAGAAGGATGACATTGCTACCGCATTCAATAGCCCTTCAGGCCAGGCTGCAAAACCATC CTTACAGAGTCTATTGGATCAGTCTGCATTCTTTGAGTCACAGTTGGAAGCTTCACGGTG TGCACATGTGGTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6PHS6 |
Definition |
sp|Q6PHS6|SNX13_MOUSE Sorting nexin-13 OS=Mus musculus |
Align length |
82 |
Score (bit) |
48.9 |
E-value |
8.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S4X5 |
Definition |
tr|A9S4X5|A9S4X5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
130 |
Score (bit) |
131.0 |
E-value |
1.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917445|Adiantum capillus-veneris mRNA, clone: YMU001_000100_H08. (374 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S4X5|A9S4X5_PHYPA Predicted protein OS=Physcomitrella paten... 131 1e-29 tr|A9SD38|A9SD38_PHYPA Predicted protein OS=Physcomitrella paten... 127 2e-28 tr|A9RFT2|A9RFT2_PHYPA Predicted protein (Fragment) OS=Physcomit... 124 2e-27 tr|A9SDH2|A9SDH2_PHYPA Predicted protein OS=Physcomitrella paten... 124 3e-27 tr|Q9XIM1|Q9XIM1_ARATH Putative uncharacterized protein At2g1590... 117 3e-25 tr|Q2RAA5|Q2RAA5_ORYSJ Phox domain-containing protein, putative,... 115 8e-25 tr|B8BJ83|B8BJ83_ORYSI Putative uncharacterized protein OS=Oryza... 115 8e-25 tr|A3C8V3|A3C8V3_ORYSJ Putative uncharacterized protein OS=Oryza... 115 8e-25 tr|Q9XI44|Q9XI44_ARATH F9L1.19 protein OS=Arabidopsis thaliana G... 107 3e-22 tr|A7P7B1|A7P7B1_VITVI Chromosome chr9 scaffold_7, whole genome ... 103 3e-21 tr|Q75HY6|Q75HY6_ORYSJ Os05g0583500 protein OS=Oryza sativa subs... 102 9e-21 tr|A3B781|A3B781_ORYSJ Putative uncharacterized protein OS=Oryza... 102 9e-21 tr|A2Y7Y8|A2Y7Y8_ORYSI Putative uncharacterized protein OS=Oryza... 102 1e-20 tr|A5CBJ9|A5CBJ9_VITVI Putative uncharacterized protein OS=Vitis... 82 2e-14 tr|A7P9B0|A7P9B0_VITVI Chromosome chr3 scaffold_8, whole genome ... 64 4e-09 tr|A7SFD4|A7SFD4_NEMVE Predicted protein (Fragment) OS=Nematoste... 54 5e-06 tr|Q80TT7|Q80TT7_MOUSE MKIAA0713 protein (Fragment) OS=Mus muscu... 49 1e-04 tr|Q3V091|Q3V091_MOUSE Putative uncharacterized protein (Fragmen... 49 1e-04 tr|Q86XC4|Q86XC4_HUMAN Sorting nexin 13 OS=Homo sapiens GN=SNX13... 49 2e-04 tr|B8ZZT9|B8ZZT9_HUMAN Putative uncharacterized protein SNX13 OS... 49 2e-04 tr|B4DGG2|B4DGG2_HUMAN cDNA FLJ56070, highly similar to Sorting ... 49 2e-04 tr|B3KN60|B3KN60_HUMAN cDNA FLJ13678 fis, clone PLACE1012031, hi... 49 2e-04 tr|B2RCI9|B2RCI9_HUMAN cDNA, FLJ96101, Homo sapiens sorting nexi... 49 2e-04 tr|B7PDH8|B7PDH8_IXOSC Sorting nexin, putative OS=Ixodes scapula... 47 5e-04 tr|A5AN73|A5AN73_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002 tr|B6L9E7|B6L9E7_BRAFL Putative uncharacterized protein OS=Branc... 44 0.003 tr|B0CRJ6|B0CRJ6_LACBS PhoX domain-containing protein OS=Laccari... 44 0.004 tr|B3RQU1|B3RQU1_TRIAD Putative uncharacterized protein OS=Trich... 44 0.005 tr|A8PVD2|A8PVD2_BRUMA PXA domain containing protein OS=Brugia m... 43 0.009 tr|B6M9B9|B6M9B9_BRAFL Putative uncharacterized protein OS=Branc... 42 0.020
>tr|A9S4X5|A9S4X5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_74637 PE=4 SV=1 Length = 1164
Score = 131 bits (330), Expect = 1e-29 Identities = 67/130 (51%), Positives = 90/130 (69%), Gaps = 6/130 (4%) Frame = +2
Query: 2 KVTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVA 181 KVT+P+LNLV +FQLQ RGW+RRQV W+AKQILQ+GMGDA DDWL+ +++WL +E+VVA Sbjct: 970 KVTVPILNLVDQIFQLQGRGWIRRQVLWIAKQILQIGMGDAFDDWLIARLQWLRKEEVVA 1029
Query: 182 SSLKWIQEILWPGGVFITKIKK-----DDIATAFNSPSGQAAK-PSLQSLLDQSAFFESQ 343 S + W++ +LWP G+FITK K +D A F+ S + + P L S FE + Sbjct: 1030 SGIHWLKGVLWPDGIFITKHPKNSTIVEDSARGFSDDSREGQQHPPLNS-------FEQR 1082
Query: 344 LEASRCAHVV 373 EA+R A VV Sbjct: 1083 QEAARRAEVV 1092
>tr|A9SD38|A9SD38_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_77750 PE=4 SV=1 Length = 1322
Score = 127 bits (320), Expect = 2e-28 Identities = 63/128 (49%), Positives = 90/128 (70%), Gaps = 4/128 (3%) Frame = +2
Query: 2 KVTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVA 181 KV++PLLNLV +FQLQ RGW+RRQV W+AKQILQ+GMGDA+DDWL+ +++WL RE+VVA Sbjct: 1126 KVSVPLLNLVDLIFQLQGRGWIRRQVLWIAKQILQLGMGDAIDDWLLGRIQWLRREEVVA 1185
Query: 182 SSLKWIQEILWPGGVFITKIKKD---DIATAFNSPSGQAAKPSLQ-SLLDQSAFFESQLE 349 S ++W++EILWP G+F+TK ++ A S + + + + FE +LE Sbjct: 1186 SGIQWVREILWPDGIFVTKHPRNLPAASAAILESTGHEVVEAGYEWQQRPPTNCFEYRLE 1245
Query: 350 ASRCAHVV 373 A+R A +V Sbjct: 1246 AARRASIV 1253
>tr|A9RFT2|A9RFT2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_113447 PE=4 SV=1 Length = 982
Score = 124 bits (312), Expect = 2e-27 Identities = 51/79 (64%), Positives = 69/79 (87%) Frame = +2
Query: 2 KVTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVA 181 KVT+PLLNLV +FQLQ RGW+RRQV W+AKQ+LQ+GMGDA DDWL+ +++WL RE+VVA Sbjct: 786 KVTVPLLNLVDQIFQLQGRGWIRRQVLWIAKQVLQLGMGDAFDDWLIARIQWLRREEVVA 845
Query: 182 SSLKWIQEILWPGGVFITK 238 S ++W++ +LWP G+F+TK Sbjct: 846 SGVQWLKGVLWPDGIFVTK 864
>tr|A9SDH2|A9SDH2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_127974 PE=4 SV=1 Length = 982
Score = 124 bits (310), Expect = 3e-27 Identities = 52/83 (62%), Positives = 69/83 (83%) Frame = +2
Query: 2 KVTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVA 181 KVT+P+LNLV +FQLQ RGW+RRQ+ W+AKQILQ+GMGDA DDWL+ +++WL EDVVA Sbjct: 796 KVTVPILNLVDQIFQLQGRGWIRRQILWIAKQILQLGMGDAFDDWLIARIQWLRNEDVVA 855
Query: 182 SSLKWIQEILWPGGVFITKIKKD 250 S + W++ +LWP G+FITK K+ Sbjct: 856 SGVHWLKGVLWPDGIFITKHPKN 878
>tr|Q9XIM1|Q9XIM1_ARATH Putative uncharacterized protein At2g15900 OS=Arabidopsis thaliana GN=At2g15900 PE=2 SV=1 Length = 952
Score = 117 bits (293), Expect = 3e-25 Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 3/123 (2%) Frame = +2
Query: 5 VTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVAS 184 V++P+LNLV VFQL RRGWLRRQVFW++KQILQ+ M DAVDD L+ ++ WL ED +A Sbjct: 811 VSVPILNLVDKVFQLNRRGWLRRQVFWISKQILQLVMEDAVDDLLMREICWLRNEDTIAQ 870
Query: 185 SLKWIQEILWPGGVFITKIKKDDIATAFNSPSGQAAKPSLQ---SLLDQSAFFESQLEAS 355 ++W Q+ILWP GVF T++ A+ PS + + + Q + + + FE QLEA Sbjct: 871 GIRWAQDILWPNGVFFTRLNDSQEASDETDPSEKTYQMAGQLGGMKVTKPSSFEQQLEAF 930
Query: 356 RCA 364 R A Sbjct: 931 RRA 933
>tr|Q2RAA5|Q2RAA5_ORYSJ Phox domain-containing protein, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g06040 PE=4 SV=2 Length = 1077
Score = 115 bits (289), Expect = 8e-25 Identities = 59/127 (46%), Positives = 89/127 (70%), Gaps = 4/127 (3%) Frame = +2
Query: 5 VTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVAS 184 V++ LLNLV VFQL+RRGW+R+QV W++KQILQ+ M DA+D+W++ ++ WL R++V+ Sbjct: 873 VSVHLLNLVDKVFQLKRRGWIRKQVLWISKQILQLVMEDAIDEWILRQINWLRRDEVIVQ 932
Query: 185 SLKWIQEILWPGGVFITKI---KKDDIATAFNS-PSGQAAKPSLQSLLDQSAFFESQLEA 352 ++WIQ+ LWP GVF T++ + + + F+ PSG A + S + D ++ FE QLEA Sbjct: 933 GIRWIQDTLWPNGVFFTRLDGYQGNAGPSQFDKHPSGSANQAS-GNRKDSASSFEQQLEA 991
Query: 353 SRCAHVV 373 SR A V Sbjct: 992 SRNASEV 998
>tr|B8BJ83|B8BJ83_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35199 PE=4 SV=1 Length = 1111
Score = 115 bits (289), Expect = 8e-25 Identities = 59/127 (46%), Positives = 89/127 (70%), Gaps = 4/127 (3%) Frame = +2
Query: 5 VTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVAS 184 V++ LLNLV VFQL+RRGW+R+QV W++KQILQ+ M DA+D+W++ ++ WL R++V+ Sbjct: 907 VSVHLLNLVDKVFQLKRRGWIRKQVLWISKQILQLVMEDAIDEWILRQINWLRRDEVIVQ 966
Query: 185 SLKWIQEILWPGGVFITKI---KKDDIATAFNS-PSGQAAKPSLQSLLDQSAFFESQLEA 352 ++WIQ+ LWP GVF T++ + + + F+ PSG A + S + D ++ FE QLEA Sbjct: 967 GIRWIQDTLWPNGVFFTRLDGYQGNAGPSQFDKHPSGSANQAS-GNRKDSASSFEQQLEA 1025
Query: 353 SRCAHVV 373 SR A V Sbjct: 1026 SRNASEV 1032
>tr|A3C8V3|A3C8V3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_031725 PE=4 SV=1 Length = 1134
Score = 115 bits (289), Expect = 8e-25 Identities = 59/127 (46%), Positives = 89/127 (70%), Gaps = 4/127 (3%) Frame = +2
Query: 5 VTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVAS 184 V++ LLNLV VFQL+RRGW+R+QV W++KQILQ+ M DA+D+W++ ++ WL R++V+ Sbjct: 907 VSVHLLNLVDKVFQLKRRGWIRKQVLWISKQILQLVMEDAIDEWILRQINWLRRDEVIVQ 966
Query: 185 SLKWIQEILWPGGVFITKI---KKDDIATAFNS-PSGQAAKPSLQSLLDQSAFFESQLEA 352 ++WIQ+ LWP GVF T++ + + + F+ PSG A + S + D ++ FE QLEA Sbjct: 967 GIRWIQDTLWPNGVFFTRLDGYQGNAGPSQFDKHPSGSANQAS-GNRKDSASSFEQQLEA 1025
Query: 353 SRCAHVV 373 SR A V Sbjct: 1026 SRNASEV 1032
>tr|Q9XI44|Q9XI44_ARATH F9L1.19 protein OS=Arabidopsis thaliana GN=F9L1.19 PE=4 SV=1 Length = 950
Score = 107 bits (267), Expect = 3e-22 Identities = 50/82 (60%), Positives = 66/82 (80%) Frame = +2
Query: 2 KVTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVA 181 K+TLPLL+LV VFQLQ GW+RR+ FW+AKQILQ+GMGDA+DDW++ K+ L R VVA Sbjct: 834 KLTLPLLDLVDVVFQLQEGGWIRRKAFWVAKQILQLGMGDALDDWVLEKICLLRRGTVVA 893
Query: 182 SSLKWIQEILWPGGVFITKIKK 247 S ++ +++ILWP GVF+TK K Sbjct: 894 SGIQRVEQILWPDGVFMTKHPK 915
>tr|A7P7B1|A7P7B1_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034391001 PE=4 SV=1 Length = 1064
Score = 103 bits (258), Expect = 3e-21 Identities = 48/99 (48%), Positives = 72/99 (72%), Gaps = 5/99 (5%) Frame = +2
Query: 5 VTLPLLNLVGGVFQLQRRGWLRRQVFWMAKQILQVGMGDAVDDWLVTKVRWLIREDVVAS 184 +++P+L+LV +FQLQ GW+RR+ FW+AKQ+LQ+GMGDA DDWL+ K++ L + V+AS Sbjct: 868 LSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLIEKIQLLRKGSVIAS 927
Query: 185 SLKWIQEILWPGGVFITKIKKD-----DIATAFNSPSGQ 286 +K +++ILWP G+F+TK K I+ + SP GQ Sbjct: 928 GIKRVEKILWPDGIFLTKHPKRRRPSVPISPSQMSPHGQ 966
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