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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917436
Clone id YMU001_000100_G11
Library
Length 276
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCAGACCTTGCAAAACCTATTATTGATGCGGGGATACCAGTCAAGATCCATATTGTGAAG
GATCATGACATGAAAGAACGCATCTGCTTAGAAGTGGAGAGGCTTGGTGTTAATGCAGTC
ATTATGGGAAGCAGAGGATTTGGTGCATCAAGGAAAACGCAAGAGGCTCGATTAGGTAGT
GTCAGTGACTATTGTGTACACCATTGTGACTGTCCTGTTGTGGTAGTCCGATATCCTGAA
GAGGAGAGAAAGGGAGAGGAGCCTGTGGTTTTGGAG
■■Homology search results ■■ -
sp_hit_id Q8LGG8
Definition sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
Align length 46
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917436|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_G11.
         (276 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS...    33   0.58 
sp|Q9NB71|HIW_DROME E3 ubiquitin-protein ligase highwire OS=Dros...    32   0.99 
sp|Q03IX4|SECA_STRTD Protein translocase subunit secA OS=Strepto...    30   3.7  
sp|Q5M2S3|SECA_STRT2 Protein translocase subunit secA OS=Strepto...    30   3.7  
sp|Q5LY68|SECA_STRT1 Protein translocase subunit secA OS=Strepto...    30   3.7  

>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein
           OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
          Length = 175

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +1

Query: 55  VKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGSVSDY 192
           +K  D K+ IC EV+R+  + +++GSRG G   + Q+  +G+VS +
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLG---RFQKVFVGTVSAF 149


>sp|Q9NB71|HIW_DROME E3 ubiquitin-protein ligase highwire
            OS=Drosophila melanogaster GN=hiw PE=1 SV=2
          Length = 5233

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = -2

Query: 275  SKTTGSSPFLSSSGYRTTTTGQSQWCTQ*SLTLPNRASCVFLDAPNPLLPIMTALTPSLS 96
            S+T+G    LS     TTTTGQ +  ++  L   + AS       NP+ PI  A+ PS +
Sbjct: 3331 SETSGLEDELSLLQITTTTTGQGEQQSELQLATTSTASSA--SKRNPMGPIKRAMPPSFA 3388

Query: 95   TS 90
             S
Sbjct: 3389 ES 3390


>sp|Q03IX4|SECA_STRTD Protein translocase subunit secA
           OS=Streptococcus thermophilus (strain ATCC BAA-491 /
           LMD-9) GN=secA PE=3 SV=1
          Length = 849

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 7   LAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARL 174
           ++K ++DAGIP ++   K+H+ +  I +   + G   +     G G   K  E  L
Sbjct: 446 ISKMLVDAGIPHEVLNAKNHEKEAHIIMNAGQRGAVTIATNMAGRGTDIKLGEGVL 501


>sp|Q5M2S3|SECA_STRT2 Protein translocase subunit secA
           OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG
           18311) GN=secA PE=3 SV=1
          Length = 849

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 7   LAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARL 174
           ++K ++DAGIP ++   K+H+ +  I +   + G   +     G G   K  E  L
Sbjct: 446 ISKMLVDAGIPHEVLNAKNHEKEAHIIMNAGQRGAVTIATNMAGRGTDIKLGEGVL 501


>sp|Q5LY68|SECA_STRT1 Protein translocase subunit secA
           OS=Streptococcus thermophilus (strain CNRZ 1066) GN=secA
           PE=3 SV=1
          Length = 849

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 7   LAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARL 174
           ++K ++DAGIP ++   K+H+ +  I +   + G   +     G G   K  E  L
Sbjct: 446 ISKMLVDAGIPHEVLNAKNHEKEAHIIMNAGQRGAVTIATNMAGRGTDIKLGEGVL 501
tr_hit_id A9NKM5
Definition tr|A9NKM5|A9NKM5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 85
Score (bit) 115.0
E-value 8.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917436|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_G11.
         (276 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NKM5|A9NKM5_PICSI Putative uncharacterized protein OS=Picea...   115   8e-25
tr|A9SNL4|A9SNL4_PHYPA Predicted protein OS=Physcomitrella paten...   115   1e-24
tr|A9RXL9|A9RXL9_PHYPA Predicted protein OS=Physcomitrella paten...   114   2e-24
tr|A7Q3B5|A7Q3B5_VITVI Chromosome chr12 scaffold_47, whole genom...   114   2e-24
tr|A5BW05|A5BW05_VITVI Putative uncharacterized protein OS=Vitis...   114   2e-24
tr|A9NNA0|A9NNA0_PICSI Putative uncharacterized protein OS=Picea...   113   4e-24
tr|Q84S20|Q84S20_ORYSJ cDNA clone:001-031-F04, full insert seque...   113   5e-24
tr|Q7XHV1|Q7XHV1_ORYSJ Os07g0551400 protein OS=Oryza sativa subs...   113   5e-24
tr|A3BKZ2|A3BKZ2_ORYSJ Putative uncharacterized protein OS=Oryza...   113   5e-24
tr|A2YMG8|A2YMG8_ORYSI Putative uncharacterized protein OS=Oryza...   113   5e-24
tr|A9T645|A9T645_PHYPA Predicted protein (Fragment) OS=Physcomit...   111   2e-23
tr|A9RGB9|A9RGB9_PHYPA Predicted protein (Fragment) OS=Physcomit...   110   5e-23
tr|A7R076|A7R076_VITVI Chromosome undetermined scaffold_298, who...   110   5e-23
tr|B6TBM4|B6TBM4_MAIZE USP family protein OS=Zea mays PE=2 SV=1       108   1e-22
tr|Q5ZAV7|Q5ZAV7_ORYSJ cDNA clone:J023018C18, full insert sequen...   108   2e-22
tr|B8AAG0|B8AAG0_ORYSI Putative uncharacterized protein OS=Oryza...   108   2e-22
tr|B4FCK0|B4FCK0_MAIZE Putative uncharacterized protein OS=Zea m...   108   2e-22
tr|A2ZYH4|A2ZYH4_ORYSJ Putative uncharacterized protein OS=Oryza...   108   2e-22
tr|Q9LPZ8|Q9LPZ8_ARATH T23J18.3 OS=Arabidopsis thaliana PE=4 SV=1     105   1e-21
tr|B6T8U5|B6T8U5_MAIZE ER6 protein OS=Zea mays PE=2 SV=1              105   1e-21
tr|Q60EJ0|Q60EJ0_ORYSJ Os05g0501700 protein OS=Oryza sativa subs...   105   1e-21
tr|B4FT81|B4FT81_MAIZE Putative uncharacterized protein OS=Zea m...   105   1e-21
tr|A2Y689|A2Y689_ORYSI Putative uncharacterized protein OS=Oryza...   105   1e-21
tr|Q9LSR2|Q9LSR2_ARATH Genomic DNA, chromosome 5, BAC clone:F24B...   103   3e-21
tr|Q8VYN9|Q8VYN9_ARATH Putative uncharacterized protein At5g5443...   103   3e-21
tr|Q67XF9|Q67XF9_ARATH Putative uncharacterized protein At4g2732...   102   7e-21
tr|B6U5U1|B6U5U1_MAIZE USP family protein OS=Zea mays PE=2 SV=1       102   7e-21
tr|B6TWE1|B6TWE1_MAIZE USP family protein OS=Zea mays PE=2 SV=1       102   7e-21
tr|Q8L4N1|Q8L4N1_ARATH Putative uncharacterized protein (Putativ...   102   1e-20
tr|Q680I4|Q680I4_ARATH Putative uncharacterized protein At4g2732...   102   1e-20

>tr|A9NKM5|A9NKM5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 208

 Score =  115 bits (289), Expect = 8e-25
 Identities = 56/85 (65%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   SDLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGS 180
           SDLA+P++DA IP KIHIVKDHDMKER+CLEVERLG++AVIMGSRGFGASR+T + RLGS
Sbjct: 97  SDLAQPLVDAHIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGASRRTYKGRLGS 156

Query: 181 VSDYXXXXXXXXXXXXRYPEEERKG 255
           VSDY            RYP+++  G
Sbjct: 157 VSDYCVHHCVCPVVVVRYPDDKDGG 181


>tr|A9SNL4|A9SNL4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_132791 PE=4 SV=1
          Length = 213

 Score =  115 bits (288), Expect = 1e-24
 Identities = 55/82 (67%), Positives = 68/82 (82%)
 Frame = +1

Query: 1   SDLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGS 180
           +DLAKP++DAGIP KIHIVKDHDMKERICLEVERLGV+A+IMGSRG GA+R++++ARLGS
Sbjct: 88  ADLAKPLLDAGIPYKIHIVKDHDMKERICLEVERLGVSAMIMGSRGVGATRRSRKARLGS 147

Query: 181 VSDYXXXXXXXXXXXXRYPEEE 246
           VSDY            R+PE++
Sbjct: 148 VSDYCLHHCECPVIVVRFPEDK 169


>tr|A9RXL9|A9RXL9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_179182 PE=4 SV=1
          Length = 207

 Score =  114 bits (286), Expect = 2e-24
 Identities = 54/82 (65%), Positives = 68/82 (82%)
 Frame = +1

Query: 1   SDLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGS 180
           +DLAKP++DAGIP KIHIVKDHDMKERICLEVERLGV+A+IMGSRG GA+R+++++RLGS
Sbjct: 88  ADLAKPLLDAGIPYKIHIVKDHDMKERICLEVERLGVSAMIMGSRGVGATRRSRKSRLGS 147

Query: 181 VSDYXXXXXXXXXXXXRYPEEE 246
           VSDY            R+PE++
Sbjct: 148 VSDYCLYHCECPVIVVRFPEDQ 169


>tr|A7Q3B5|A7Q3B5_VITVI Chromosome chr12 scaffold_47, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029225001
           PE=4 SV=1
          Length = 280

 Score =  114 bits (286), Expect = 2e-24
 Identities = 55/85 (64%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   SDLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGS 180
           SDLA+P+++A IP KIHIVKDHDMKER+CLEVERLG++AVIMGSRGFGAS++T + RLGS
Sbjct: 124 SDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGASKRTSKGRLGS 183

Query: 181 VSDYXXXXXXXXXXXXRYPEEERKG 255
           VSDY            RYP+E+  G
Sbjct: 184 VSDYCVHHCVCPVVVVRYPDEKDGG 208


>tr|A5BW05|A5BW05_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039450 PE=4 SV=1
          Length = 280

 Score =  114 bits (286), Expect = 2e-24
 Identities = 55/85 (64%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   SDLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGS 180
           SDLA+P+++A IP KIHIVKDHDMKER+CLEVERLG++AVIMGSRGFGAS++T + RLGS
Sbjct: 124 SDLAQPLVEAQIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGASKRTSKGRLGS 183

Query: 181 VSDYXXXXXXXXXXXXRYPEEERKG 255
           VSDY            RYP+E+  G
Sbjct: 184 VSDYCVHHCVCPVVVVRYPDEKDGG 208


>tr|A9NNA0|A9NNA0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 240

 Score =  113 bits (283), Expect = 4e-24
 Identities = 55/88 (62%), Positives = 65/88 (73%)
 Frame = +1

Query: 1   SDLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGS 180
           SDLA+P+++  +P KIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGAS++  ++RLGS
Sbjct: 83  SDLAQPLVEGNVPFKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASKRNCKSRLGS 142

Query: 181 VSDYXXXXXXXXXXXXRYPEEERKGEEP 264
           VSDY            R+PEE      P
Sbjct: 143 VSDYCVRHCVCPVVVVRFPEEPEAVPSP 170


>tr|Q84S20|Q84S20_ORYSJ cDNA clone:001-031-F04, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBb0041B22.112-2
           PE=2 SV=1
          Length = 268

 Score =  113 bits (282), Expect = 5e-24
 Identities = 54/80 (67%), Positives = 64/80 (80%)
 Frame = +1

Query: 4   DLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGSV 183
           DLAKP+ DAGIP KIHIVKDHDMKER+CLEVERLG++AVIMGS+GFGASR+T + RLGSV
Sbjct: 148 DLAKPLKDAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSV 207

Query: 184 SDYXXXXXXXXXXXXRYPEE 243
           SDY            R+P++
Sbjct: 208 SDYCVHHCVCPVVVVRFPDD 227


>tr|Q7XHV1|Q7XHV1_ORYSJ Os07g0551400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0041B22.112-1 PE=4 SV=1
          Length = 268

 Score =  113 bits (282), Expect = 5e-24
 Identities = 54/80 (67%), Positives = 64/80 (80%)
 Frame = +1

Query: 4   DLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGSV 183
           DLAKP+ DAGIP KIHIVKDHDMKER+CLEVERLG++AVIMGS+GFGASR+T + RLGSV
Sbjct: 148 DLAKPLKDAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSV 207

Query: 184 SDYXXXXXXXXXXXXRYPEE 243
           SDY            R+P++
Sbjct: 208 SDYCVHHCVCPVVVVRFPDD 227


>tr|A3BKZ2|A3BKZ2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023714 PE=4 SV=1
          Length = 268

 Score =  113 bits (282), Expect = 5e-24
 Identities = 54/80 (67%), Positives = 64/80 (80%)
 Frame = +1

Query: 4   DLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGSV 183
           DLAKP+ DAGIP KIHIVKDHDMKER+CLEVERLG++AVIMGS+GFGASR+T + RLGSV
Sbjct: 148 DLAKPLKDAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSV 207

Query: 184 SDYXXXXXXXXXXXXRYPEE 243
           SDY            R+P++
Sbjct: 208 SDYCVHHCVCPVVVVRFPDD 227


>tr|A2YMG8|A2YMG8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26421 PE=4 SV=1
          Length = 268

 Score =  113 bits (282), Expect = 5e-24
 Identities = 54/80 (67%), Positives = 64/80 (80%)
 Frame = +1

Query: 4   DLAKPIIDAGIPVKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASRKTQEARLGSV 183
           DLAKP+ DAGIP KIHIVKDHDMKER+CLEVERLG++AVIMGS+GFGASR+T + RLGSV
Sbjct: 148 DLAKPLKDAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSV 207

Query: 184 SDYXXXXXXXXXXXXRYPEE 243
           SDY            R+P++
Sbjct: 208 SDYCVHHCVCPVVVVRFPDD 227