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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917432
Clone id YMU001_000100_G02
Library
Length 450
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGGCGATCTAACGCGCGGATTTGCCCCACAGGAAGACCCCCACCGCATACTGTCGCTTCT
CGCGAAGAGTTCCAAGAACGGGCAAGCCATACTCCTCGAGGAGGCGGTCGAGCTTCCACT
CTGGCATGCTGTCATAGTCGTCCTTGGTGTATTTGGGGTAATGTAGGGGCATTTGGAATG
TAGTGGGCACATCAGGCTTCTTGAAGGAGGAGCTGTAGGCCAAGCGGGGGCTGCGGACCG
CCATGCTACCACCCGGCGAGGAGGGGAGGGAGGAGGATGGTAACAATGAGGAGGCGAGTG
CGGAGAGGGAGAGTTGCTTCTCGAGGCTGTGAAGCTGCTGGGAGCTCCACTCCTCTCTTG
ACTTTTGGTCTCTTTGCATTTCTTGCACTGATCTCTCCAAGCTCTTGACTCTCTCTATGA
GGTCTTTCTGCTCAAAGCTCCCGCTAACCT
■■Homology search results ■■ -
sp_hit_id Q5XIR6
Definition sp|Q5XIR6|IQCD_RAT IQ domain-containing protein D OS=Rattus norvegicus
Align length 34
Score (bit) 31.2
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917432|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_G02.
         (450 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XIR6|IQCD_RAT IQ domain-containing protein D OS=Rattus norv...    31   2.1  
sp|Q9X100|GATB_THEMA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    31   2.1  
sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus muscu...    31   2.8  
sp|Q91785|KI15A_XENLA Kinesin-like protein KIF15-A OS=Xenopus la...    31   2.8  
sp|P42331|RHG25_HUMAN Rho GTPase-activating protein 25 OS=Homo s...    30   3.6  
sp|Q0V9T6|CC64A_XENTR Coiled-coil domain-containing protein 64A ...    30   4.7  
sp|A6TC10|MNMC_KLEP7 tRNA 5-methylaminomethyl-2-thiouridine bios...    30   6.1  
sp|A6NE21|F90AI_HUMAN Putative protein FAM90A18/FAM90A19 OS=Homo...    29   8.2  
sp|A6NEW6|F90AG_HUMAN Putative protein FAM90A16/FAM90A17 OS=Homo...    29   8.2  
sp|A6NDY2|F90AA_HUMAN Putative protein FAM90A10 OS=Homo sapiens ...    29   8.2  
sp|A6NNJ1|F90A9_HUMAN Putative protein FAM90A9 OS=Homo sapiens G...    29   8.2  
sp|A6NJQ4|F90A8_HUMAN Putative protein FAM90A8 OS=Homo sapiens G...    29   8.2  
sp|A6NKC0|F90A7_HUMAN Putative protein FAM90A7 OS=Homo sapiens G...    29   8.2  

>sp|Q5XIR6|IQCD_RAT IQ domain-containing protein D OS=Rattus
           norvegicus GN=Iqcd PE=2 SV=2
          Length = 457

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = -3

Query: 421 LIERVKSLERSVQEMQRDQKSREEWSSQQLHSLE 320
           L+E+   L+R  +E+++ +++ E+W  ++L S+E
Sbjct: 99  LVEKASILQRKQKELEKGEEAEEDWDQERLLSIE 132


>sp|Q9X100|GATB_THEMA Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Thermotoga maritima
           GN=gatB PE=3 SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 205 FKKPDVPTTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLP 80
           F +PD+P    +   Y +  K +   +P+ K +R + EYGLP
Sbjct: 277 FPEPDIPPVV-LSDEYLEEVKKELPELPDEKAERFMREYGLP 317


>sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus musculus
           GN=Tbc1d10b PE=1 SV=1
          Length = 537

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 430 QKDLIERVKSLERSVQEMQRDQKSREEWSSQQLHSLEKQ 314
           QK   +R K  +R  +E +R +K R++W  +Q    +KQ
Sbjct: 454 QKQEKDREKERQRQEKERERQEKERQKWEKEQEKEQQKQ 492


>sp|Q91785|KI15A_XENLA Kinesin-like protein KIF15-A OS=Xenopus
           laevis GN=kif15-A PE=1 SV=1
          Length = 1388

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -3

Query: 433 EQKDLIERVKSLERSVQEMQRDQKSREEWSSQQLHSL 323
           EQ+DLI ++KSLE+  QE     KS+E+    ++H L
Sbjct: 777 EQQDLIAQIKSLEKQKQE----NKSQEDVLKSEVHDL 809


>sp|P42331|RHG25_HUMAN Rho GTPase-activating protein 25 OS=Homo
           sapiens GN=ARHGAP25 PE=1 SV=1
          Length = 638

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 11/34 (32%), Positives = 26/34 (76%)
 Frame = -3

Query: 415 ERVKSLERSVQEMQRDQKSREEWSSQQLHSLEKQ 314
           E + SL+R VQE++++ +++++   +Q+ +LEK+
Sbjct: 541 EEIDSLQRMVQELRKEIETQKQMYEEQIKNLEKE 574


>sp|Q0V9T6|CC64A_XENTR Coiled-coil domain-containing protein 64A
           OS=Xenopus tropicalis GN=ccdc64 PE=2 SV=1
          Length = 599

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 427 KDLIERVKSLERSVQEMQRDQKSREEWSSQQLHSLEKQ 314
           K L+ER + + R  +EMQR+   + E   Q+ H L+++
Sbjct: 81  KALLERNQDMSRRYEEMQREMTDKLEHLEQEKHELKRK 118


>sp|A6TC10|MNMC_KLEP7 tRNA 5-methylaminomethyl-2-thiouridine
           biosynthesis bifunctional protein mnmC OS=Klebsiella
           pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
           78578) GN=mnmC PE=3 SV=1
          Length = 662

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 104 PPRGVWLARSWNSSREATVCGGGL 33
           P R  W ARS + +REA + GGG+
Sbjct: 251 PARVPWFARSSSDAREAAIIGGGI 274


>sp|A6NE21|F90AI_HUMAN Putative protein FAM90A18/FAM90A19 OS=Homo
           sapiens GN=FAM90A18 PE=1 SV=1
          Length = 464

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 20/56 (35%), Positives = 23/56 (41%)
 Frame = -1

Query: 168 PYITPNTPRTTMTACQXXXXXXXXXSMACPFLELFARSDSMRWGSSCGANPRVRSP 1
           P+ TP  P  T  AC            A P   LF R ++ RW SS  A P   SP
Sbjct: 364 PHSTPCLP--TAQACTMSHHSAASHDGAQPLRVLFRRLENGRWSSSLLAAPSFHSP 417


>sp|A6NEW6|F90AG_HUMAN Putative protein FAM90A16/FAM90A17 OS=Homo
           sapiens GN=FAM90A16 PE=3 SV=1
          Length = 464

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 20/56 (35%), Positives = 23/56 (41%)
 Frame = -1

Query: 168 PYITPNTPRTTMTACQXXXXXXXXXSMACPFLELFARSDSMRWGSSCGANPRVRSP 1
           P+ TP  P  T  AC            A P   LF R ++ RW SS  A P   SP
Sbjct: 364 PHSTPCLP--TAQACTMSHHSAASHDGAQPLRVLFRRLENGRWSSSLLAAPSFHSP 417


>sp|A6NDY2|F90AA_HUMAN Putative protein FAM90A10 OS=Homo sapiens
           GN=FAM90A10 PE=2 SV=1
          Length = 464

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 20/56 (35%), Positives = 23/56 (41%)
 Frame = -1

Query: 168 PYITPNTPRTTMTACQXXXXXXXXXSMACPFLELFARSDSMRWGSSCGANPRVRSP 1
           P+ TP  P  T  AC            A P   LF R ++ RW SS  A P   SP
Sbjct: 364 PHSTPCLP--TAQACTMSHHPAAGHDGAQPLRVLFRRLENGRWSSSLLAAPSFHSP 417
tr_hit_id Q1G3G9
Definition tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana
Align length 59
Score (bit) 91.7
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917432|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_G02.
         (450 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabi...    92   2e-17
tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragmen...    92   2e-17
tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea m...    91   3e-17
tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08...    90   5e-17
tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza...    90   5e-17
tr|A7QNB4|A7QNB4_VITVI Chromosome chr2 scaffold_132, whole genom...    85   2e-15
tr|A7PZS1|A7PZS1_VITVI Chromosome chr15 scaffold_40, whole genom...    85   2e-15
tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea m...    84   3e-15
tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea m...    84   3e-15
tr|A9PIZ8|A9PIZ8_POPJC Putative uncharacterized protein OS=Popul...    83   6e-15
tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein OSJNBa00...    83   8e-15
tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subs...    83   8e-15
tr|A7R2A3|A7R2A3_VITVI Chromosome undetermined scaffold_410, who...    83   8e-15
tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza...    83   8e-15
tr|Q9M2S2|Q9M2S2_ARATH Putative uncharacterized protein T22E16.2...    82   2e-14
tr|B8AFA1|B8AFA1_ORYSI Putative uncharacterized protein OS=Oryza...    79   9e-14
tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subs...    79   1e-13
tr|B6UC11|B6UC11_MAIZE Putative uncharacterized protein OS=Zea m...    79   1e-13
tr|B6TG82|B6TG82_MAIZE Putative uncharacterized protein OS=Zea m...    79   1e-13
tr|B4FUG1|B4FUG1_MAIZE Putative uncharacterized protein OS=Zea m...    79   1e-13
tr|A7PIP0|A7PIP0_VITVI Chromosome chr13 scaffold_17, whole genom...    77   3e-13
tr|B6T827|B6T827_MAIZE Putative uncharacterized protein OS=Zea m...    77   4e-13
tr|B6T4F8|B6T4F8_MAIZE Putative uncharacterized protein OS=Zea m...    76   1e-12
tr|Q8GY86|Q8GY86_ARATH Putative uncharacterized protein At5g5562...    75   2e-12
tr|Q9SR60|Q9SR60_ARATH Putative uncharacterized protein T22K18.2...    72   1e-11
tr|Q9FM76|Q9FM76_ARATH Gb|AAF04428.1 OS=Arabidopsis thaliana PE=...    72   2e-11
tr|Q8LC55|Q8LC55_ARATH Putative uncharacterized protein (At5g556...    72   2e-11
tr|Q58FW2|Q58FW2_ARATH Putative uncharacterized protein OS=Arabi...    70   7e-11
tr|A5B4B1|A5B4B1_VITVI Putative uncharacterized protein OS=Vitis...    59   1e-07
tr|Q9FI85|Q9FI85_ARATH Gb|AAF04428.1 (Putative uncharacterized p...    55   1e-06

>tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 101

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 38/59 (64%), Positives = 48/59 (81%)
 Frame = -3

Query: 202 KKPDVPTTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 26
           K  +  ++FQ+PLHYPKYTK DY+ MPEW+LDRLL EYGLPV+G   EKR++A+G FLW
Sbjct: 37  KPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLW 95


>tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 102

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 38/59 (64%), Positives = 48/59 (81%)
 Frame = -3

Query: 202 KKPDVPTTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 26
           K  +  ++FQ+PLHYPKYTK DY+ MPEW+LDRLL EYGLPV+G   EKR++A+G FLW
Sbjct: 37  KPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLW 95


>tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 87

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 35/52 (67%), Positives = 47/52 (90%)
 Frame = -3

Query: 178 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLWG 23
           FQMPLHYP+++++DY++MPEW+LDRLL EYGLPV GT+ +KR +A+G FLWG
Sbjct: 30  FQMPLHYPRHSREDYEAMPEWQLDRLLSEYGLPVAGTVHQKRTFAIGTFLWG 81


>tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08.38
           (Putative uncharacterized protein) (Putative
           uncharacterized protein P0443E05.1) OS=Oryza sativa
           subsp. japonica GN=P0483F08.38 PE=4 SV=1
          Length = 79

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 37/52 (71%), Positives = 44/52 (84%)
 Frame = -3

Query: 178 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLWG 23
           FQMPLHYP+Y K+DY+ MPEW+LDRLL EYGLPV G L+ KR +A+G FLWG
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLWG 71


>tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00937 PE=4 SV=1
          Length = 79

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 37/52 (71%), Positives = 44/52 (84%)
 Frame = -3

Query: 178 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLWG 23
           FQMPLHYP+Y K+DY+ MPEW+LDRLL EYGLPV G L+ KR +A+G FLWG
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLWG 71


>tr|A7QNB4|A7QNB4_VITVI Chromosome chr2 scaffold_132, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002465001
           PE=4 SV=1
          Length = 91

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 35/51 (68%), Positives = 43/51 (84%)
 Frame = -3

Query: 178 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 26
           FQMPLHYP+Y K DY++MPEWKLD LL +YGLPV G L +KR++A+G FLW
Sbjct: 36  FQMPLHYPRYRKTDYETMPEWKLDCLLTQYGLPVTGDLTQKRKFAMGAFLW 86


>tr|A7PZS1|A7PZS1_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026984001
           PE=4 SV=1
          Length = 80

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 34/51 (66%), Positives = 44/51 (86%)
 Frame = -3

Query: 178 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 26
           FQMPLHYP+YT+ DY++MPEWK+D LL EYGLPV G + +KR++A+G FLW
Sbjct: 28  FQMPLHYPRYTQADYETMPEWKIDCLLAEYGLPVTGGVEQKRKFAMGAFLW 78


>tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 99

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 34/53 (64%), Positives = 45/53 (84%)
 Frame = -3

Query: 184 TTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 26
           ++F+MPLHYP+Y K DY++MPEW++D LL EYGLPV G LR KR++A+G FLW
Sbjct: 43  SSFRMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVAGDLRGKREFAMGAFLW 95


>tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 104

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 40/71 (56%), Positives = 48/71 (67%)
 Frame = -3

Query: 238 VRSPRLAYSSSFKKPDVPTTFQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLRE 59
           V  PR    SS+       TF MPLHYP+Y K DY+SMPEW++D LL EYGLPV G L  
Sbjct: 37  VEGPRTMNCSSY-------TFHMPLHYPRYKKADYESMPEWRVDCLLREYGLPVDGELDS 89

Query: 58  KRQYAVGVFLW 26
           KR++A+G FLW
Sbjct: 90  KRKFAMGAFLW 100


>tr|A9PIZ8|A9PIZ8_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=4 SV=1
          Length = 92

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 33/51 (64%), Positives = 43/51 (84%)
 Frame = -3

Query: 178 FQMPLHYPKYTKDDYDSMPEWKLDRLLEEYGLPVLGTLREKRQYAVGVFLW 26
           FQMPLHYP+Y K DY++MPEW+LD LL+EYGLP +G   +KR++A+G FLW
Sbjct: 37  FQMPLHYPRYKKCDYETMPEWRLDCLLKEYGLPAIGDANQKRKFAMGAFLW 87