BP917280 |
Clone id |
YMU001_000098_F11 |
Library |
YMU01 |
Length |
515 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000098_F11. |
Accession |
BP917280 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CCAAGTTCTCAAAAAAACCAATTCAAAGTCAATATGAAGCAACAAGGGGCACATGGTATT TAATTATTCAAGAGAATGATATGAAAGCCGCAAGTGTAAGTAGATATTTATGCATACCAT ACCATTAAAAGAAATAGTAGGATTCAAGAGCAAGAAGTGAAATCGGGCATCAAAGTTCAC ACAGATACACAGCAAGAAAATACTAATAGAGTTATCTCTGTGTCAAGATGATGTCAATAA CCCATTAGATTGGGGACATAAAAGTACCACGAGAACCGCATCATAAAAGTTCCCCAGAGT TATGTATGAGTCAAGATGACTGTAGCAAACCATCAAGTAAGTGAGCAAAAAGTGAGAGTC AACCACCAGAACCAGACTAGGTGTTACATGCAAGCAAAACAATAACCAGTGGCCAAAATC CACCAGATTCTCAACAGATACAACCTATGTCTAAAGTCACAAGGAAGCAACAGAGTAACC ATATTAAGCCAGGCCTAAGAATTAGGCCTTTGTAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31392 |
Definition |
sp|P31392|GP182_RAT G-protein coupled receptor 182 OS=Rattus norvegicus |
Align length |
33 |
Score (bit) |
37.0 |
E-value |
0.054 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A0BYJ7 |
Definition |
tr|A0BYJ7|A0BYJ7_PARTE Chromosome undetermined scaffold_137, whole genome shotgun sequence OS=Paramecium tetraurelia |
Align length |
62 |
Score (bit) |
38.1 |
E-value |
0.26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917280|Adiantum capillus-veneris mRNA, clone: YMU001_000098_F11. (515 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A0BYJ7|A0BYJ7_PARTE Chromosome undetermined scaffold_137, who... 38 0.26 tr|A1L1I2|A1L1I2_RAT G protein-coupled receptor 182 (RCG59831, i... 37 0.58 tr|A0CTB5|A0CTB5_PARTE Chromosome undetermined scaffold_27, whol... 36 0.98 tr|Q6LAJ3|Q6LAJ3_HUMAN G-protein coupled receptor OS=Homo sapien... 36 0.98 tr|A6QPN2|A6QPN2_BOVIN GPR182 protein (Fragment) OS=Bos taurus G... 35 2.2 tr|Q8CBY2|Q8CBY2_MOUSE Putative uncharacterized protein OS=Mus m... 34 4.9 tr|Q6PCH1|Q6PCH1_XENLA MGC69068 protein OS=Xenopus laevis GN=gpr... 33 6.4 tr|Q1EF98|Q1EF98_METAN Cytochrome c oxidase subunit 1 OS=Metarhi... 27 7.1
>tr|A0BYJ7|A0BYJ7_PARTE Chromosome undetermined scaffold_137, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00033467001 PE=4 SV=1 Length = 384
Score = 38.1 bits (87), Expect = 0.26 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Frame = -3
Query: 216 DNSISIFLLCICVNFDARFHFLLLNPTISFNGMVCINIYLHLRLSYH-----SLE*LNTM 52 D S+ +F+ C + F L+NP+ F G++C N L + Y +L+ + + Sbjct: 138 DRSVPLFIFCHALGASMVISFCLMNPSFQFQGLICSNAQLRVPAKYGKFKMLTLKLMTKL 197
Query: 51 CP 46 CP Sbjct: 198 CP 199
>tr|A1L1I2|A1L1I2_RAT G protein-coupled receptor 182 (RCG59831, isoform CRA_a) OS=Rattus norvegicus GN=Gpr182 PE=2 SV=1 Length = 398
Score = 37.0 bits (84), Expect = 0.58 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = -1
Query: 344 SLT*WFATVILTHT*LWGTFMMRFSWYFYVPNL 246 SL W V+L +T LWG+F RF YFY+ N+ Sbjct: 101 SLPVWMLEVMLEYTWLWGSFSCRFIHYFYLANM 133
>tr|A0CTB5|A0CTB5_PARTE Chromosome undetermined scaffold_27, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00010266001 PE=4 SV=1 Length = 275
Score = 36.2 bits (82), Expect = 0.98 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Frame = -3
Query: 216 DNSISIFLLCICVNFDARFHFLLLNPTISFNGMVCINIYLHLRLSYH-----SLE*LNTM 52 D S+ +F+ C + F L+NP+ F G++C + L + Y +L+ + + Sbjct: 138 DRSVPLFIFCHALGASMVISFCLMNPSFQFQGLICSSAQLRVPAKYGKIKMLTLKLMTKL 197
Query: 51 CP 46 CP Sbjct: 198 CP 199
>tr|Q6LAJ3|Q6LAJ3_HUMAN G-protein coupled receptor OS=Homo sapiens GN=gamrh PE=2 SV=1 Length = 404
Score = 36.2 bits (82), Expect = 0.98 Identities = 16/33 (48%), Positives = 20/33 (60%) Frame = -1
Query: 344 SLT*WFATVILTHT*LWGTFMMRFSWYFYVPNL 246 SL W V L +T LWG+F RF+ YFY N+ Sbjct: 105 SLPVWMLEVTLDYTWLWGSFSCRFTHYFYFVNM 137
>tr|A6QPN2|A6QPN2_BOVIN GPR182 protein (Fragment) OS=Bos taurus GN=GPR182 PE=2 SV=1 Length = 437
Score = 35.0 bits (79), Expect = 2.2 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -1
Query: 344 SLT*WFATVILTHT*LWGTFMMRFSWYFYVPNL 246 SL W L +T LWG+F RF+ YFY N+ Sbjct: 141 SLPVWMLEATLDYTWLWGSFSCRFTHYFYYANM 173
>tr|Q8CBY2|Q8CBY2_MOUSE Putative uncharacterized protein OS=Mus musculus GN=OTTMUSG00000013002 PE=2 SV=1 Length = 158
Score = 33.9 bits (76), Expect = 4.9 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Frame = -3
Query: 210 SISIFL---LCICVNFDARFHFLLLNPTISFNGMVC----INIYLHLRLSYHSLE*LNTM 52 S+S+ L L +C++ F+F LL P++SF+ +C +++ + L LS S + + Sbjct: 58 SVSVSLSVCLHLCLSASLSFYFFLLYPSVSFSLFLCLSVSVSVSVSLSLSLSSSSPFSPV 117
Query: 51 CPLLLH-IDFELVFLRTW 1 P LL+ + V L TW Sbjct: 118 LPPLLYFLHCFSVILSTW 135
>tr|Q6PCH1|Q6PCH1_XENLA MGC69068 protein OS=Xenopus laevis GN=gpr182 PE=2 SV=1 Length = 363
Score = 33.5 bits (75), Expect = 6.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1
Query: 332 WFATVILTHT*LWGTFMMRFSWYFYVPNL 246 W +L +T LWG F+ +F+ YFY N+ Sbjct: 104 WMLETMLEYTWLWGGFLCKFTHYFYFANM 132
>tr|Q1EF98|Q1EF98_METAN Cytochrome c oxidase subunit 1 OS=Metarhizium anisopliae GN=cox1 PE=3 SV=1 Length = 526
Score = 26.9 bits (58), Expect(2) = 7.1 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -1
Query: 293 GTFMMRFSWYFYVPNLMGY*HHLDTEITL 207 G F M WYF++P ++G L+ ++TL Sbjct: 383 GVFAMFAGWYFWIPKMLG----LNYDLTL 407
Score = 25.0 bits (53), Expect(2) = 7.1 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Frame = -3
Query: 348 LLTYLMVCYSHLDSY--ITLGNFYDAVL 271 LL + + CYSH DSY T+G VL Sbjct: 329 LLKWHLQCYSHSDSYSCCTIGGLSGVVL 356
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