NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917208
Clone id YMU001_000097_F07
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTATTCGTCACGGGAAAGTATTGGCCCAAACTGTATGAGATAAAGGTTCGGCCACATTC
AGAAGAACTCCAAGATCACAAACATGTATGGGAGAGATGCCATGTGCATTCTTAAGCCTG
GAAGGATTGAAGGGCAAACTAGCATCAAACGGGAAATGACTTGAGAAACAATCAGAGGTA
TACTATGGATGCTTGTACATGTCAGACAAGCTCATAAAAATAGACCCCCTGATTATGAGG
AGCTATGTCCAACTCATATTTATGGAAATCATCCAAAGTAAGAGTGTGAGTGCAGGTCGT
TTACTCTTTGGGTGTCGTCATGGGGGTTGTCTATTCAATTTCTAAAGGGGACCTATCAAC
ATACGGGTTCCGGTCTGAGATGATGGTAACTTTCATATACC
■■Homology search results ■■ -
sp_hit_id A1JPY2
Definition sp|A1JPY2|TRPA_YERE8 Tryptophan synthase alpha chain OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
Align length 25
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917208|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_F07.
         (401 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1JPY2|TRPA_YERE8 Tryptophan synthase alpha chain OS=Yersinia...    31   2.2  
sp|Q59699|HYDA_PSEPU D-hydantoinase/dihydropyrimidinase OS=Pseud...    30   4.9  
sp|Q66AK5|TRPA_YERPS Tryptophan synthase alpha chain OS=Yersinia...    29   8.3  
sp|A4TJ68|TRPA_YERPP Tryptophan synthase alpha chain OS=Yersinia...    29   8.3  
sp|Q1CJ29|TRPA_YERPN Tryptophan synthase alpha chain OS=Yersinia...    29   8.3  
sp|Q8ZEH0|TRPA_YERPE Tryptophan synthase alpha chain OS=Yersinia...    29   8.3  
sp|Q1C7P3|TRPA_YERPA Tryptophan synthase alpha chain OS=Yersinia...    29   8.3  
sp|A7FI34|TRPA_YERP3 Tryptophan synthase alpha chain OS=Yersinia...    29   8.3  
sp|Q4UM43|SYE1_RICFE Glutamyl-tRNA synthetase 1 OS=Rickettsia fe...    29   8.3  

>sp|A1JPY2|TRPA_YERE8 Tryptophan synthase alpha chain OS=Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
           GN=trpA PE=3 SV=1
          Length = 268

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 152 PFDASLPFNPSRLKNAHGISPIHVC 78
           PF+ SLPF  + L+  HGI+PI +C
Sbjct: 132 PFEESLPFRTAALR--HGIAPIFIC 154


>sp|Q59699|HYDA_PSEPU D-hydantoinase/dihydropyrimidinase
           OS=Pseudomonas putida GN=dht PE=1 SV=2
          Length = 495

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
 Frame = +3

Query: 54  HIQKNSKITNMYGRDAMCILKPGRIEGQTSIKREMT*ETIRGILWM--------LVHVRQ 209
           H+QK      M G +A  + +P ++EG+ + +     ETI   L++        L  +  
Sbjct: 192 HLQKKLLAQGMTGPEAHPLSRPSQVEGEAASRAIRIAETIGTPLYVVHISSREALDEITY 251

Query: 210 AHKNRPPDYEELCPTHI 260
           A     P Y E+ P H+
Sbjct: 252 ARAKGQPVYGEVLPGHL 268


>sp|Q66AK5|TRPA_YERPS Tryptophan synthase alpha chain OS=Yersinia
           pseudotuberculosis GN=trpA PE=3 SV=1
          Length = 268

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 152 PFDASLPFNPSRLKNAHGISPIHVC 78
           PF+ S PF  + L+  HGI+PI +C
Sbjct: 132 PFEESAPFRAAALR--HGIAPIFIC 154


>sp|A4TJ68|TRPA_YERPP Tryptophan synthase alpha chain OS=Yersinia
           pestis (strain Pestoides F) GN=trpA PE=3 SV=1
          Length = 268

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 152 PFDASLPFNPSRLKNAHGISPIHVC 78
           PF+ S PF  + L+  HGI+PI +C
Sbjct: 132 PFEESAPFRAAALR--HGIAPIFIC 154


>sp|Q1CJ29|TRPA_YERPN Tryptophan synthase alpha chain OS=Yersinia
           pestis bv. Antiqua (strain Nepal516) GN=trpA PE=3 SV=1
          Length = 268

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 152 PFDASLPFNPSRLKNAHGISPIHVC 78
           PF+ S PF  + L+  HGI+PI +C
Sbjct: 132 PFEESAPFRAAALR--HGIAPIFIC 154


>sp|Q8ZEH0|TRPA_YERPE Tryptophan synthase alpha chain OS=Yersinia
           pestis GN=trpA PE=3 SV=1
          Length = 268

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 152 PFDASLPFNPSRLKNAHGISPIHVC 78
           PF+ S PF  + L+  HGI+PI +C
Sbjct: 132 PFEESAPFRAAALR--HGIAPIFIC 154


>sp|Q1C7P3|TRPA_YERPA Tryptophan synthase alpha chain OS=Yersinia
           pestis bv. Antiqua (strain Antiqua) GN=trpA PE=3 SV=1
          Length = 268

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 152 PFDASLPFNPSRLKNAHGISPIHVC 78
           PF+ S PF  + L+  HGI+PI +C
Sbjct: 132 PFEESAPFRAAALR--HGIAPIFIC 154


>sp|A7FI34|TRPA_YERP3 Tryptophan synthase alpha chain OS=Yersinia
           pseudotuberculosis serotype O:1b (strain IP 31758)
           GN=trpA PE=3 SV=1
          Length = 268

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 152 PFDASLPFNPSRLKNAHGISPIHVC 78
           PF+ S PF  + L+  HGI+PI +C
Sbjct: 132 PFEESAPFRAAALR--HGIAPIFIC 154


>sp|Q4UM43|SYE1_RICFE Glutamyl-tRNA synthetase 1 OS=Rickettsia felis
           GN=gltX1 PE=3 SV=1
          Length = 447

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 8   VTGKYWPKLYEIKVRPHSEELQDHKHVWERCH 103
           +  +Y  + + + VRP+ ++L+D K  WE CH
Sbjct: 330 IDAEYIDENFWLSVRPNLQKLRDVKDWWEICH 361
tr_hit_id A7QG72
Definition tr|A7QG72|A7QG72_VITVI Chromosome undetermined scaffold_91, whole genome shotgun sequence OS=Vitis vinifera
Align length 25
Score (bit) 42.0
E-value 0.015
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917208|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_F07.
         (401 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QG72|A7QG72_VITVI Chromosome undetermined scaffold_91, whol...    42   0.015
tr|Q5VRH1|Q5VRH1_ORYSJ Os06g0103700 protein OS=Oryza sativa subs...    39   0.17 
tr|B8B199|B8B199_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|A3B7J4|A3B7J4_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|B6TVD4|B6TVD4_MAIZE Glutamine cyclotransferase OS=Zea mays PE...    37   0.63 
tr|A9S633|A9S633_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.63 
tr|Q3JCV5|Q3JCV5_NITOC Glutamine cyclotransferase OS=Nitrosococc...    36   0.83 
tr|B6BZA5|B6BZA5_9GAMM Glutamine cyclotransferase superfamily OS...    36   0.83 
tr|Q2V9A5|Q2V9A5_SOLTU Glutamine cyclotransferase-like OS=Solanu...    36   0.83 
tr|Q1GW00|Q1GW00_SPHAL Glutamine cyclotransferase OS=Sphingopyxi...    35   1.4  
tr|Q1NEC6|Q1NEC6_9SPHN Glutamine cyclotransferase OS=Sphingomona...    35   1.4  
tr|Q8LFT4|Q8LFT4_ARATH Glutamine cyclotransferase-like protein O...    35   1.4  
tr|Q9T000|Q9T000_ARATH Glutamine cyclotransferase-like protein O...    35   2.4  
tr|Q84WV9|Q84WV9_ARATH Putative glutamine cyclotransferase OS=Ar...    35   2.4  
tr|Q2V3F0|Q2V3F0_ARATH Uncharacterized protein At4g25720.3 OS=Ar...    35   2.4  
tr|A7BTW1|A7BTW1_9GAMM Putative uncharacterized protein OS=Beggi...    34   4.1  
tr|Q5H0V8|Q5H0V8_XANOR Glutamine cyclotransferase OS=Xanthomonas...    33   5.4  
tr|Q3BSL3|Q3BSL3_XANC5 Glutamine cyclotransferase OS=Xanthomonas...    33   5.4  
tr|Q2P3U4|Q2P3U4_XANOM Glutamine cyclotransferase OS=Xanthomonas...    33   5.4  
tr|B2SLJ9|B2SLJ9_XANOP Glutamine cyclotransferase OS=Xanthomonas...    33   5.4  
tr|Q9J8A3|Q9J8A3_9ABAC ORF32 pkip OS=Spodoptera exigua MNPV PE=4...    33   7.0  
tr|Q9A519|Q9A519_CAUCR Glutamine cyclotransferase OS=Caulobacter...    33   7.0  
tr|Q8P8M4|Q8P8M4_XANCP Glutamine cyclotransferase OS=Xanthomonas...    33   7.0  
tr|Q4UVF9|Q4UVF9_XANC8 Glutamine cyclotransferase OS=Xanthomonas...    33   7.0  
tr|B0RS82|B0RS82_XANCB Complete genome, strain B100 OS=Xanthomon...    33   7.0  
tr|B8H0X0|B8H0X0_CAUCR Glutaminyl-peptide cyclotransferase OS=Ca...    33   7.0  
tr|B4WEN5|B4WEN5_9CAUL Glutamine cyclotransferase superfamily OS...    33   7.0  
tr|Q020V1|Q020V1_SOLUE Glutamine cyclotransferase OS=Solibacter ...    33   9.1  
tr|A7AAB1|A7AAB1_9PORP Putative uncharacterized protein OS=Parab...    33   9.1  

>tr|A7QG72|A7QG72_VITVI Chromosome undetermined scaffold_91, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037725001 PE=4 SV=1
          Length = 315

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 18/25 (72%), Positives = 18/25 (72%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKVRPHSEELQD 76
           LFVTGK WPKLYEIKV P     QD
Sbjct: 277 LFVTGKLWPKLYEIKVHPMKRRFQD 301


>tr|Q5VRH1|Q5VRH1_ORYSJ Os06g0103700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0075G19.31 PE=2 SV=1
          Length = 342

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKVRP 55
           LFVTGK WPK+YEIK+RP
Sbjct: 305 LFVTGKLWPKIYEIKLRP 322


>tr|B8B199|B8B199_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21279 PE=4 SV=1
          Length = 323

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKVRP 55
           LFVTGK WPK+YEIK+RP
Sbjct: 286 LFVTGKLWPKIYEIKLRP 303


>tr|A3B7J4|A3B7J4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019016 PE=4 SV=1
          Length = 323

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKVRP 55
           LFVTGK WPK+YEIK+RP
Sbjct: 286 LFVTGKLWPKIYEIKLRP 303


>tr|B6TVD4|B6TVD4_MAIZE Glutamine cyclotransferase OS=Zea mays PE=2
           SV=1
          Length = 316

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKVR 52
           LFVTGK WPKLYEIK+R
Sbjct: 279 LFVTGKLWPKLYEIKLR 295


>tr|A9S633|A9S633_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_181594 PE=4 SV=1
          Length = 313

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKVRPHSEELQDHKHVWERC 100
           LFVTGK WPK+YEI++   +    D K V + C
Sbjct: 273 LFVTGKLWPKVYEIELFDQTSHYNDLKAVRKMC 305


>tr|Q3JCV5|Q3JCV5_NITOC Glutamine cyclotransferase OS=Nitrosococcus
           oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_0828
           PE=4 SV=1
          Length = 272

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKV 49
           LFVTGKYWPKL+EIK+
Sbjct: 254 LFVTGKYWPKLFEIKL 269


>tr|B6BZA5|B6BZA5_9GAMM Glutamine cyclotransferase superfamily
           OS=Nitrosococcus oceani AFC27 GN=NOC27_10 PE=4 SV=1
          Length = 280

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKV 49
           LFVTGKYWPKL+EIK+
Sbjct: 262 LFVTGKYWPKLFEIKL 277


>tr|Q2V9A5|Q2V9A5_SOLTU Glutamine cyclotransferase-like OS=Solanum
           tuberosum PE=2 SV=1
          Length = 289

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 13/18 (72%), Positives = 17/18 (94%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEIKVRP 55
           +FVTGK WPK++EIK+RP
Sbjct: 245 IFVTGKLWPKIFEIKLRP 262


>tr|Q1GW00|Q1GW00_SPHAL Glutamine cyclotransferase OS=Sphingopyxis
           alaskensis GN=Sala_0451 PE=4 SV=1
          Length = 255

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 2   LFVTGKYWPKLYEI 43
           LFVTGKYWPKLYEI
Sbjct: 236 LFVTGKYWPKLYEI 249