BP917188 |
Clone id |
YMU001_000097_D07 |
Library |
YMU01 |
Length |
516 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000097_D07. |
Accession |
BP917188 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TCTTATTCTGAAGGTCTATGAGGATCTAGCATTGTATGTTTACTCTTGCCCTCAAGGGCA AGGTTTCGAAGCTGCTAGAGTAGCTCTCATGTCAAATGATTCTTATGCCAGGGAGGCAGC TGTGAACGTGCTTTGTTTGTGGGCAGATATGGATACCTCTCAAGAGATAACAAGGCATCA GAAGAATCTTTTGTCTGCCCTTGCACAAGCTTTGCAGGATAACATACAAGGGACAGGGCG TGCAGCGGCATTATGCTTTGAGAAATTAGGGAAGAGCGATGCATCGAGGACTCTTGGTAT AAGGAGTGCGAAATCGGGAGAGAAGCTTGCACACATTCTTATAGACTTGGTGTGCATTTC TGTCTTTGAACGGGAGGAAGAGAATGAGTCAAAAGTGTATATCAGAGCATTGATACCTTT GATGCCTCTGGTCATGGAGAGAATCGGCAGCTACACAGAATTTTCCTGCTGCAATGGCAA ACAGGTGGTCAATTTGAGGCAGGCGCTGATGAGCAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0T2E5 |
Definition |
sp|Q0T2E5|FADI_SHIF8 3-ketoacyl-CoA thiolase OS=Shigella flexneri serotype 5b (strain 8401) |
Align length |
91 |
Score (bit) |
32.7 |
E-value |
1.0 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q4RLR5 |
Definition |
tr|Q4RLR5|Q4RLR5_TETNG Chromosome 10 SCAF15019, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis |
Align length |
69 |
Score (bit) |
36.2 |
E-value |
0.98 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917188|Adiantum capillus-veneris mRNA, clone: YMU001_000097_D07. (516 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q4RLR5|Q4RLR5_TETNG Chromosome 10 SCAF15019, whole genome sho... 36 0.98 tr|A2AJ76|A2AJ76_MOUSE Hemicentin 2 OS=Mus musculus GN=Hmcn2 PE=... 34 3.8 tr|A3ZSD0|A3ZSD0_9PLAN Putative uncharacterized protein OS=Blast... 34 4.9 tr|Q0YL48|Q0YL48_9DELT GTP-binding signal recognition particle S... 33 6.4 tr|B8KW59|B8KW59_9GAMM Iron-sulfur cluster binding protein, puta... 33 6.5 tr|Q1BQW7|Q1BQW7_BURCA Transcriptional regulator, DeoR family OS... 33 8.3 tr|B4EIN9|B4EIN9_BURCJ DeoR family regulatory protein OS=Burkhol... 33 8.3 tr|B1K5T9|B1K5T9_BURCC Transcriptional regulator, DeoR family OS... 33 8.3 tr|A0B2Y2|A0B2Y2_BURCH Transcriptional regulator, DeoR family OS... 33 8.3 tr|A7T3H3|A7T3H3_NEMVE Predicted protein OS=Nematostella vectens... 33 8.3
>tr|Q4RLR5|Q4RLR5_TETNG Chromosome 10 SCAF15019, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00032374001 PE=4 SV=1 Length = 1171
Score = 36.2 bits (82), Expect = 0.98 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%) Frame = -3
Query: 283 CIALP*FLKA*C--------RCTPCPLYVILQSL-CKGRQKILLMP--CYLLRGIHICPQ 137 C++ P F A C RC CPL L CK + +P CY+ G+H+C Sbjct: 554 CLSNPCFPGAMCTSFPDGSFRCGKCPLGYTGDGLTCKDIDECKEVPDACYVHNGVHLCEN 613
Query: 136 TKHVHSCLP 110 T+ ++CLP Sbjct: 614 TEPGYNCLP 622
>tr|A2AJ76|A2AJ76_MOUSE Hemicentin 2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1 Length = 5100
Score = 34.3 bits (77), Expect = 3.8 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +1
Query: 109 QGGSCERALFVGRYGYLSRDNKASEESFVCPCTSFAG*HTRDRA 240 +G S E+ L VGR YL + A E ++ C C++ AG +++++ Sbjct: 2240 EGDSLEQVLAVGRLLYLGQAQSAQEGTYTCECSNAAGTSSQEQS 2283
>tr|A3ZSD0|A3ZSD0_9PLAN Putative uncharacterized protein OS=Blastopirellula marina DSM 3645 GN=DSM3645_14630 PE=4 SV=1 Length = 186
Score = 33.9 bits (76), Expect = 4.9 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Frame = +2
Query: 149 MDTSQEITRHQKNLLSALAQALQ----DNIQGTGRAAALCFEKLGKSDASRTLG-IRSAK 313 +D+ + H K L A ++ L+ ++ QG R AAL ++G S+ SR LG +R AK Sbjct: 7 LDSKMDTWSH-KGYLLAFSEFLELLTPEHQQGVQRDAALLCYRIGSSE-SRLLGRVRHAK 64
Query: 314 SGEKLAHILIDLVCISVFEREEENE 388 S ++ IL D + + E E E + Sbjct: 65 SIHQIKQILSDSIQAKIEEYESEGD 89
>tr|Q0YL48|Q0YL48_9DELT GTP-binding signal recognition particle SRP54, G-domain OS=Geobacter sp. FRC-32 GN=GeobDRAFT_2461 PE=4 SV=1 Length = 450
Score = 33.5 bits (75), Expect = 6.4 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 10/150 (6%) Frame = +2
Query: 74 ARVALMSNDSYAREAAVNVLCLWAD-MDTSQEITRHQKNLLSALAQALQDNIQGTGRAAA 250 ARVA+++ D++ R AV L ++ MD E+ K L + LA+ ++ Sbjct: 285 ARVAMVTTDNF-RVGAVEQLKTYSKIMDVPLEVAATAKELEAVLAKHADKDL-------- 335
Query: 251 LCFEKLGKSDASRTLGIRSAKSGEKLAHILIDL---------VCISVFEREEENESKVYI 403 + + G RS K EKL + + L +CIS R+ E V Sbjct: 336 ILIDTAG----------RSPKDREKLEELKVYLESCPGIETYLCISATTRDREMNEIVAQ 385
Query: 404 RALIPLMPLVMERIGSYTEFSCCNGKQVVN 493 +L+P+ L+ ++ + C QV N Sbjct: 386 YSLLPITRLLFTKLDESESYGCIVNAQVRN 415
>tr|B8KW59|B8KW59_9GAMM Iron-sulfur cluster binding protein, putative OS=gamma proteobacterium NOR51-B GN=NOR51B_905 PE=4 SV=1 Length = 358
Score = 33.5 bits (75), Expect = 6.5 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -1
Query: 402 IYTFDSFSSSRSKTEMHTKSIRMCASFSPDFALLIPRVLDA 280 IYT F + +KTE H S R C P A + P VLDA Sbjct: 180 IYTSIPFPTDPAKTEKHCGSCRACLDVCPTAAFVGPYVLDA 220
>tr|Q1BQW7|Q1BQW7_BURCA Transcriptional regulator, DeoR family OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_3092 PE=4 SV=1 Length = 252
Score = 33.1 bits (74), Expect = 8.3 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Frame = +2
Query: 110 REAAVNVLCLWADMDTSQEITRHQKNLLSALAQALQDN---IQGTGRAAALCFEKLGKSD 280 R A++V L +D S+E R N L+A + + + R +L + +D Sbjct: 16 RSGALSVAELVRSLDVSRETVRRDLNALAARGLLVMTHGGALAADRREPSLSEREAANAD 75
Query: 281 ASRTLGIRSAKSGEKLAHILID 346 A RT+G R+A+ A +LID Sbjct: 76 AKRTIGRRAAEFVPDDASVLID 97
>tr|B4EIN9|B4EIN9_BURCJ DeoR family regulatory protein OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=BceJ2315_59130 PE=4 SV=1 Length = 252
Score = 33.1 bits (74), Expect = 8.3 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Frame = +2
Query: 110 REAAVNVLCLWADMDTSQEITRHQKNLLSALAQALQDN---IQGTGRAAALCFEKLGKSD 280 R A++V L +D S+E R N L+A + + + R +L + +D Sbjct: 16 RSGALSVAELVRSLDVSRETVRRDLNALAARGLLVMTHGGALAADRREPSLSEREAANAD 75
Query: 281 ASRTLGIRSAKSGEKLAHILID 346 A RT+G R+A+ A +LID Sbjct: 76 AKRTIGRRAAEFVPDDASVLID 97
>tr|B1K5T9|B1K5T9_BURCC Transcriptional regulator, DeoR family OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_4993 PE=4 SV=1 Length = 252
Score = 33.1 bits (74), Expect = 8.3 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Frame = +2
Query: 110 REAAVNVLCLWADMDTSQEITRHQKNLLSALAQALQDN---IQGTGRAAALCFEKLGKSD 280 R A++V L +D S+E R N L+A + + + R +L + +D Sbjct: 16 RSGALSVAELVRSLDVSRETVRRDLNALAARGLLVMTHGGALAADRREPSLSEREAANAD 75
Query: 281 ASRTLGIRSAKSGEKLAHILID 346 A RT+G R+A+ A +LID Sbjct: 76 AKRTIGRRAAEFVPDDASVLID 97
>tr|A0B2Y2|A0B2Y2_BURCH Transcriptional regulator, DeoR family OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_5275 PE=4 SV=1 Length = 252
Score = 33.1 bits (74), Expect = 8.3 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Frame = +2
Query: 110 REAAVNVLCLWADMDTSQEITRHQKNLLSALAQALQDN---IQGTGRAAALCFEKLGKSD 280 R A++V L +D S+E R N L+A + + + R +L + +D Sbjct: 16 RSGALSVAELVRSLDVSRETVRRDLNALAARGLLVMTHGGALAADRREPSLSEREAANAD 75
Query: 281 ASRTLGIRSAKSGEKLAHILID 346 A RT+G R+A+ A +LID Sbjct: 76 AKRTIGRRAAEFVPDDASVLID 97
>tr|A7T3H3|A7T3H3_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g221802 PE=4 SV=1 Length = 928
Score = 33.1 bits (74), Expect = 8.3 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 12/152 (7%) Frame = +2
Query: 89 MSNDSYAREAAVNVLCLWADMDTSQEITRHQKNLLSALAQALQDNIQG-TGRAAALC-FE 262 + ++ A + N LC++ ++ KN+ A+ +L DN Q ALC +E Sbjct: 241 LGDNGQAMKNLKNALCIYEKFGEERKQADVYKNI-GAVFISLGDNGQAMVNFKNALCIYE 299
Query: 263 KLGK----SDASRTLGI------RSAKSGEKLAHILIDLVCISVFEREEENESKVYIRAL 412 K G+ +D +GI + K+ E H L CI EE ++ VY Sbjct: 300 KFGEECKQADVYNNIGIVYNSLGDNGKAMENYKHAL----CIYEKFGEECKQADVY---- 351
Query: 413 IPLMPLVMERIGSYTEFSCCNGKQVVNLRQAL 508 IG+ + C NG+ +VNL+ AL Sbjct: 352 --------NNIGAVFNYPCDNGQAMVNLKNAL 375
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