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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917179
Clone id YMU001_000097_C07
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCTTGCGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTGGCAAACGACGAAATA
CTTCGGGGAGCCGAAAATAGGTATAGATCCGGAGATCCCGAATAGGTTAACCTTCCAAAC
TGGCTGCTGAATTCAGAAGCAGACAAGAGACAACCCGGCGAACTGAAACATCTTAGTAGC
CGGAGGAGGAAAAAGCAAAAGCGATTCCCCTAGTAACGGCGAGTGAAACGGGAAGAGCCT
AAACCGTGAAGACGGGGTTGTGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAG
TTGAGTGCTGCACCCCAGATGGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCT
CCAACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTA
AGGCTAAATATTCCTGAGTGACCGATAGCGAAGCAGTACCGTGAGGGAAAGGTGAAAAGA
ACCCCCGTCGGGGAGTGAAATAGAACATGAAACCGCGAGCTCCCAAGCAGTGGGAGGAGA
ATGAGATC
■■Homology search results ■■ -
sp_hit_id Q8TGM6
Definition sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae
Align length 33
Score (bit) 38.1
E-value 0.028
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917179|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_C07.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae GN...    38   0.028
sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis GN=TAR...    38   0.028
sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   1.2  
sp|Q10880|Y051_MYCTU Uncharacterized protein Rv0083/MT0090 OS=My...    30   7.7  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   7.7  

>sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae
           GN=TAR1 PE=2 SV=1
          Length = 124

 Score = 38.1 bits (87), Expect = 0.028
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -2

Query: 511 FMFYFTPRRGFFSPFPHGTASLSVTQEYLALQG 413
           F ++FT    FFS F H T SLSV+++YLAL G
Sbjct: 27  FTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59


>sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis GN=TAR1-A
           PE=4 SV=2
          Length = 109

 Score = 38.1 bits (87), Expect = 0.028
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -2

Query: 511 FMFYFTPRRGFFSPFPHGTASLSVTQEYLALQG 413
           F ++FT    FFS F H T SLSV+++YLAL G
Sbjct: 12  FTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44


>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 228 FHSPLLGESLLLFPPPATKMFQFAGLSL 145
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q10880|Y051_MYCTU Uncharacterized protein Rv0083/MT0090
           OS=Mycobacterium tuberculosis GN=Rv0083 PE=3 SV=2
          Length = 640

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 165 QFAGLSLVCF*IQQPVWKVNLFGISGSIPIFGSPKYFVVCHALLRLWVPRYPPQA 1
           +FAGL  VC  ++  V+ + L G       FGS    V  HA    W+PR  P+A
Sbjct: 164 RFAGLGAVCDGVRAAVFMLTLVG-------FGSKAGLVPLHA----WLPRAHPEA 207


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 261 WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 368
           +E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154
tr_hit_id A4QMB9
Definition tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis
Align length 80
Score (bit) 103.0
E-value 9.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917179|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_C07.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1           103   9e-25
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    90   2e-22
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    89   2e-16
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   2e-16
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   2e-16
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   2e-16
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    75   3e-12
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    75   3e-12
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            74   4e-12
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    74   7e-12
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    72   2e-11
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    68   3e-11
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    68   4e-11
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    69   1e-10
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    65   1e-10
tr|A6P028|A6P028_9BACE Putative uncharacterized protein OS=Bacte...    69   2e-10
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    66   4e-10
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    67   6e-10
tr|A5BTC0|A5BTC0_VITVI Putative uncharacterized protein OS=Vitis...    67   6e-10
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    67   8e-10
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    67   8e-10
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    65   3e-09
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    64   4e-09
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    57   4e-09
tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a...    64   7e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    63   9e-09
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    43   2e-08
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    43   2e-08
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    43   2e-08
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    43   3e-08

>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
          Length = 124

 Score =  103 bits (256), Expect(2) = 9e-25
 Identities = 55/80 (68%), Positives = 59/80 (73%)
 Frame = -3

Query: 246 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQPVWKVNLFGISGSIPIFGS 67
           RFRL PF SPLL ESLLL  P ATKMFQFA LSL C  IQQ +  +   GISGS+ IF S
Sbjct: 45  RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLKGLTYSGISGSMLIFNS 104

Query: 66  PKYFVVCHALLRLWVPRYPP 7
           PK+FV  HAL RLWVPRYPP
Sbjct: 105 PKHFVAYHALPRLWVPRYPP 124



 Score = 33.5 bits (75), Expect(2) = 9e-25
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -2

Query: 376 MLLGLERELAVLPATGLSPSGVQ 308
           MLLGLER+  +L ATGLSPS VQ
Sbjct: 1   MLLGLERKPMMLSATGLSPSRVQ 23


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 89.7 bits (221), Expect(3) = 2e-22
 Identities = 43/57 (75%), Positives = 45/57 (78%)
 Frame = -1

Query: 539 LLPLLGSSRFHVLFHSPTGVLFTFPSRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 369
           LLPLLG+  FHVLFHS  GVLFT PSRY FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 216 LLPLLGNLWFHVLFHSSMGVLFTLPSRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 32.0 bits (71), Expect(3) = 2e-22
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -2

Query: 352 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 245
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309



 Score = 26.9 bits (58), Expect(3) = 2e-22
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 131 FSSQFGRLTYSG-SPDLYLFSAPRSISSF 48
           F+ QF RLTYSG S  + +F++P+   ++
Sbjct: 308 FTQQFERLTYSGISGSMLIFNSPKHFVAY 336



 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -3

Query: 99  GISGSIPIFGSPKYFVVCHALLRLWVPRYP 10
           GISGS+ IF SPK+FV  +AL RLWVPRYP
Sbjct: 319 GISGSMLIFNSPKHFVAYYALSRLWVPRYP 348


>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 300 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 461
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 300 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 461
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 300 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 461
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 300 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 461
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein
           OS=Burkholderia multivorans (strain ATCC 17616 / 249)
           GN=BMULJ_05093 PE=4 SV=1
          Length = 120

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 35/51 (68%), Positives = 37/51 (72%)
 Frame = -2

Query: 520 ARGFMFYFTPRRGFFSPFPHGTASLSVTQEYLALQGGPR*FTRDFACPMLL 368
           A GF  YFTP  GFFSPFPHGT SLSV  EYLAL+ GP  F +DF CP LL
Sbjct: 3   ACGFRIYFTPLPGFFSPFPHGTGSLSVDHEYLALEDGPPIFRQDFTCPALL 53


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = +3

Query: 321 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 461
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 35/43 (81%), Positives = 36/43 (83%)
 Frame = -1

Query: 485 GVLFTFPSRYCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 357
           GVLFTFPSRY FAIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 2   GVLFTFPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein
           OS=uncultured beta proteobacterium CBNPD1 BAC clone 578
           PE=4 SV=1
          Length = 126

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 34/51 (66%), Positives = 37/51 (72%)
 Frame = -2

Query: 520 ARGFMFYFTPRRGFFSPFPHGTASLSVTQEYLALQGGPR*FTRDFACPMLL 368
           A GF  YFTP  GFFSPFPHGT SLSV  EYLAL+ GP  F +D+ CP LL
Sbjct: 3   ACGFRIYFTPLPGFFSPFPHGTCSLSVNYEYLALEDGPPIFRQDYTCPALL 53



 Score = 36.2 bits (82), Expect = 1.2
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = -3

Query: 240 RLFPFHSPLLGESLLLFPPPATKMFQFA 157
           RL  F SPLL ES L+  P AT+MFQFA
Sbjct: 88  RLLRFRSPLLSESRLMSVPRATEMFQFA 115