NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917148
Clone id YMU001_000096_G02
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000096_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTAACATCCGCTTCATTCATAATCGCTTCCGTCATGACACAAACTTGGACTCCTCCAT
CTATATGTGCACGTACCTGCAACTTCTTTTCGATGATTGCCTCCACAAGAGGAAGAACAT
CCGTAGGACTTCCATCCTCAAGGCCATATTCTGGACCGCATGTACATTTTCTTTGGCGCT
TGGTAGCCTCGTGCTAACGCTAGTTGACCACTATCGCCTTAGCTTTGGGTTCAAGGCAAA
CAGCTGCCCAAAAGTTGTATTGCTCTTTGACTTTGAACATCACTTACCATGTCATATTTT
GGATAGTCATACCCAAGTTGAAAATCAGTTTGCTTGATTTTGCGGCGCCTTCTTCTCTTG
CTAGTTTGAGGTTGTTCTTTACCTTTATATACCTTCTCTTTACCCTTGCGAGCCCTAGTC
TCCCACTTGGTTTCTGTTTCCTTCTCAGTTCTCGCTCTCTTATTATTGGCCAAGACATCC
AATTCCTGCTTATCCACCCCTATAATACTCACCCTTTGGACTTCACGACCATTT
■■Homology search results ■■ -
sp_hit_id Q7ZZL8
Definition sp|Q7ZZL8|TMHS_CHICK Tetraspan membrane protein of hair cell stereocilia homolog OS=Gallus gallus
Align length 50
Score (bit) 31.6
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917148|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_G02.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ZZL8|TMHS_CHICK Tetraspan membrane protein of hair cell ste...    32   2.3  
sp|P56720|SRBP1_RAT Sterol regulatory element-binding protein 1 ...    32   2.3  
sp|Q9WTN3|SRBP1_MOUSE Sterol regulatory element-binding protein ...    32   2.3  
sp|Q12219|YORA4_YEAST Uncharacterized protein YOR114W OS=Sacchar...    30   6.8  
sp|Q561R8|FA26F_RAT Protein FAM26F OS=Rattus norvegicus GN=Fam26...    30   6.8  
sp|A1L1R6|ZN423_DANRE Zinc finger protein 423 OS=Danio rerio GN=...    30   8.7  
sp|Q5PPI7|TMHS_RAT Tetraspan membrane protein of hair cell stere...    30   8.8  
sp|Q4KL25|TMHS_MOUSE Tetraspan membrane protein of hair cell ste...    30   8.8  
sp|Q8TAF8|TMHS_HUMAN Tetraspan membrane protein of hair cell ste...    30   8.8  
sp|Q54QQ1|PHG2_DICDI Serine/threonine-protein kinase phg2 OS=Dic...    30   8.8  

>sp|Q7ZZL8|TMHS_CHICK Tetraspan membrane protein of hair cell
           stereocilia homolog OS=Gallus gallus GN=LHFPL5 PE=2 SV=1
          Length = 221

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -2

Query: 189 QLALARGYQAPKKMYMRSRIWP*GWKSYGCSSSCGGNHRKEVAGTCTYRW 40
           QLA A G      + +   I+P GW S      CG    K   G CT RW
Sbjct: 134 QLAAATG------LMIGCLIYPDGWDSSEVKRMCGDKTDKYTLGACTVRW 177


>sp|P56720|SRBP1_RAT Sterol regulatory element-binding protein 1
           OS=Rattus norvegicus GN=Srebf1 PE=1 SV=3
          Length = 1134

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +1

Query: 109 GLPSSRPYSGPHVHFLWRLVASC*R*LTTIALALGSRQTAAQKLYCSL 252
           G P +RP+SGP VHF WR      R    + LA G    AAQ+L+ +L
Sbjct: 557 GEPVTRPHSGPAVHF-WRH-----RKQADLDLARGDFAQAAQQLWLAL 598


>sp|Q9WTN3|SRBP1_MOUSE Sterol regulatory element-binding protein 1
           OS=Mus musculus GN=Srebf1 PE=1 SV=4
          Length = 1134

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +1

Query: 109 GLPSSRPYSGPHVHFLWRLVASC*R*LTTIALALGSRQTAAQKLYCSL 252
           G P +RP+SGP VHF WR      R    + LA G    AAQ+L+ +L
Sbjct: 557 GEPVTRPHSGPAVHF-WRH-----RKQADLDLARGDFPQAAQQLWLAL 598


>sp|Q12219|YORA4_YEAST Uncharacterized protein YOR114W
           OS=Saccharomyces cerevisiae GN=YOR114W PE=4 SV=1
          Length = 294

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -1

Query: 262 CSKSKSNTTFGQLFALNPKLRR*WSTSVSTRLPSAKENVHAVQNMALRMEVLRMFFLLWR 83
           CSKS+SNT  G+   +NP+ R      +S    +AK + H  QN     + ++ F     
Sbjct: 158 CSKSRSNTPVGK---INPRKRLVALKRISRSENTAKNHSHEAQNYL--YDYMKRF----- 207

Query: 82  QSSKRSCRY 56
           Q   + CRY
Sbjct: 208 QQMCKECRY 216


>sp|Q561R8|FA26F_RAT Protein FAM26F OS=Rattus norvegicus GN=Fam26f
           PE=2 SV=1
          Length = 315

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 187 LTTIALALGSR--QTAAQKLYCSLTLNITYHVIFWIVIPKLKISLLDFA 327
           L T+  A G +   T   +  C+ TLN+TY ++F +++P L + LL +A
Sbjct: 22  LVTLLTAGGEKIFSTVVFQCPCTATLNLTYGLVF-LLVPALALFLLGYA 69


>sp|A1L1R6|ZN423_DANRE Zinc finger protein 423 OS=Danio rerio
           GN=znf423 PE=2 SV=1
          Length = 1365

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
 Frame = +3

Query: 24  TNLDSSIYMCTYLQLLFDDCLHKRKNI-RRTSILKAIFWTACTFSLALGSLVLTLVDHYR 200
           T  D  +YMC Y +  F       K++  +   L       C     + S   TL+ H  
Sbjct: 279 TEQDQDLYMCDYCEETFSQTDELEKHVLTQHPQLSDRAELQCIHCPEIFSDEGTLLTHID 338

Query: 201 LSFGFKANSCPKVVLLFDFEHHLPCHILDSHTQVEN 308
            +   K + CP     F     + CH LDSH Q ++
Sbjct: 339 RTHANKKHKCPMCAEQFPSVEDVYCH-LDSHRQPDS 373


>sp|Q5PPI7|TMHS_RAT Tetraspan membrane protein of hair cell
           stereocilia OS=Rattus norvegicus GN=Lhfpl5 PE=2 SV=1
          Length = 219

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 189 QLALARGYQAPKKMYMRSRIWP*GWKSYGCSSSCGGNHRKEVAGTCTYRW 40
           QLA A G      + +   ++P GW S      CG    K   G CT RW
Sbjct: 134 QLAAATG------LMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRW 177


>sp|Q4KL25|TMHS_MOUSE Tetraspan membrane protein of hair cell
           stereocilia OS=Mus musculus GN=Lhfpl5 PE=1 SV=1
          Length = 219

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 189 QLALARGYQAPKKMYMRSRIWP*GWKSYGCSSSCGGNHRKEVAGTCTYRW 40
           QLA A G      + +   ++P GW S      CG    K   G CT RW
Sbjct: 134 QLAAATG------LMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRW 177


>sp|Q8TAF8|TMHS_HUMAN Tetraspan membrane protein of hair cell
           stereocilia OS=Homo sapiens GN=LHFPL5 PE=1 SV=1
          Length = 219

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 189 QLALARGYQAPKKMYMRSRIWP*GWKSYGCSSSCGGNHRKEVAGTCTYRW 40
           QLA A G      + +   ++P GW S      CG    K   G CT RW
Sbjct: 134 QLAAATG------LMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRW 177


>sp|Q54QQ1|PHG2_DICDI Serine/threonine-protein kinase phg2
           OS=Dictyostelium discoideum GN=phg2 PE=1 SV=1
          Length = 1387

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 378 KVYKGKEQPQTSKRRRRRKIKQTDFQLGYDYPKYDMVSDVQSQRAIQLLGSCLP*TQ 208
           KVYKGK + +    +  R    T  Q+     + D++S +QS   I   GSC+  +Q
Sbjct: 820 KVYKGKYRDKFVAIKTMRGSNMTTEQIESFKKECDILSTIQSPLLISFYGSCIEESQ 876
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917148|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_G02.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******