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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917139
Clone id YMU001_000096_E11
Library
Length 262
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000096_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATGGAGATGCTGTCATTAACCTACCTAATGGCCTACACACCACTATTTCTCACCTATTT
TAGTCCCTGGTCTCAAGAAAAATCTCATCTCTGTCAGCAAGCTAACCGACAACGGCATCA
TCATCAAATTCATGCGAGAAGGCTGCCACATTTTGCACTAAACAAAGATGGTCAGTATGT
CACACTTTTGGTCCCCAAAACTGGGCGTCTTTATCCATTGGGTGACTCATCGCCTGCACA
TGCACCTGCATCATCCATAAAA
■■Homology search results ■■ -
sp_hit_id Q4ZWS8
Definition sp|Q4ZWS8|RS2_PSEU2 30S ribosomal protein S2 OS=Pseudomonas syringae pv. syringae (strain B728a)
Align length 37
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917139|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_E11.
         (262 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4ZWS8|RS2_PSEU2 30S ribosomal protein S2 OS=Pseudomonas syri...    30   3.7  
sp|A1AXW9|RS2_RUTMC 30S ribosomal protein S2 OS=Ruthia magnifica...    30   4.8  
sp|A4SYV1|RS2_POLSQ 30S ribosomal protein S2 OS=Polynucleobacter...    30   4.8  

>sp|Q4ZWS8|RS2_PSEU2 30S ribosomal protein S2 OS=Pseudomonas
           syringae pv. syringae (strain B728a) GN=rpsB PE=3 SV=1
          Length = 247

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 132 MREGCHILH*TKMVSMSHFWSPKLGVFIHWVTHRLHM 242
           ++ GCH  H T+      +W+PK+G +I    +++H+
Sbjct: 10  LKAGCHFGHQTR------YWNPKMGKYIFGARNKIHI 40


>sp|A1AXW9|RS2_RUTMC 30S ribosomal protein S2 OS=Ruthia magnifica
           subsp. Calyptogena magnifica GN=rpsB PE=3 SV=1
          Length = 312

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 126 KFMREGCHILH*TKMVSMSHFWSPKLGVFIHWVTHRLHM 242
           K +  G H  H       S FWSPK+G FI+   + +H+
Sbjct: 8   KMLEAGVHFGH------RSRFWSPKMGRFIYGTRNGVHI 40


>sp|A4SYV1|RS2_POLSQ 30S ribosomal protein S2 OS=Polynucleobacter
           sp. (strain QLW-P1DMWA-1) GN=rpsB PE=3 SV=1
          Length = 249

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 126 KFMREGCHILH*TKMVSMSHFWSPKLGVFIHWVTHRLHM 242
           + +  GCH  H T+      FWSPK+  FI    +++H+
Sbjct: 7   QMLEAGCHFGHQTR------FWSPKMAPFIFGHRNKIHI 39
tr_hit_id A5BJM5
Definition tr|A5BJM5|A5BJM5_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 49
Score (bit) 32.7
E-value 0.033
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917139|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_E11.
         (262 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BJM5|A5BJM5_VITVI Putative uncharacterized protein OS=Vitis...    33   0.033
tr|A5BQ40|A5BQ40_VITVI Putative uncharacterized protein OS=Vitis...    33   0.044
tr|A5AGK3|A5AGK3_VITVI Putative uncharacterized protein OS=Vitis...    32   0.069
tr|A5ADY5|A5ADY5_VITVI Putative uncharacterized protein OS=Vitis...    32   0.070
tr|A5BNN7|A5BNN7_VITVI Putative uncharacterized protein OS=Vitis...    32   0.072
tr|A5BM82|A5BM82_VITVI Putative uncharacterized protein OS=Vitis...    31   0.091
tr|Q2QZX3|Q2QZX3_ORYSJ Retrotransposon protein, putative, Ty1-co...    38   0.22 
tr|A5BZE3|A5BZE3_VITVI Putative uncharacterized protein OS=Vitis...    29   0.32 
tr|A5BIK7|A5BIK7_VITVI Putative uncharacterized protein OS=Vitis...    29   0.42 
tr|A5B1F1|A5B1F1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.64 
tr|Q60EV4|Q60EV4_ORYSJ Putative polyprotein OS=Oryza sativa subs...    36   0.84 
tr|Q7G6C4|Q7G6C4_ORYSJ Putative gag-pol polyprotein (Retrotransp...    36   1.1  
tr|A2Q5V3|A2Q5V3_MEDTR Peptidase aspartic, catalytic; Polynucleo...    36   1.1  
tr|Q6RZV4|Q6RZV4_MUSAC Retrotransposon-like protein OS=Musa acum...    35   1.9  
tr|Q0PEL6|Q0PEL6_BETVU Putative integrase OS=Beta vulgaris PE=4 ...    35   2.4  
tr|A5AL42|A5AL42_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|A2I5F8|A2I5F8_BETVU Integrase OS=Beta vulgaris PE=4 SV=1            35   2.4  
tr|A5B7U3|A5B7U3_VITVI Putative uncharacterized protein OS=Vitis...    32   2.5  
tr|A5C9T7|A5C9T7_VITVI Putative uncharacterized protein OS=Vitis...    32   3.2  
tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger,...    34   3.2  
tr|A5C2Z8|A5C2Z8_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|Q967L5|Q967L5_AEDAE Putative uncharacterized protein OS=Aedes...    34   3.2  
tr|A5AP42|A5AP42_VITVI Putative uncharacterized protein OS=Vitis...    30   5.3  
tr|Q84VI4|Q84VI4_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    33   5.4  
tr|Q84VI2|Q84VI2_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    33   5.4  
tr|Q84VI0|Q84VI0_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    33   5.4  
tr|Q84VH8|Q84VH8_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    33   5.4  
tr|O65147|O65147_SOYBN Gag-pol polyprotein OS=Glycine max GN=pol...    33   5.4  
tr|A9NWA6|A9NWA6_PICSI Putative uncharacterized protein OS=Picea...    33   5.4  
tr|A5C0G9|A5C0G9_VITVI Putative uncharacterized protein OS=Vitis...    33   5.4  

>tr|A5BJM5|A5BJM5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015686 PE=4 SV=1
          Length = 1308

 Score = 32.7 bits (73), Expect(2) = 0.033
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 60  LVPGLKKNLISVSKLTDNGIIIKFMREGCHILH*TKMVSMSHFWSPKLG 206
           L P L  NLISV +L DN   + F   GC +    K  S++    PK+G
Sbjct: 365 LAPQLSTNLISVGQLVDNNCAVNFSGNGCVVQDQVKGKSIAK--RPKVG 411



 Score = 27.3 bits (59), Expect(2) = 0.033
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 194 PKTGRLYPLGDSSPAHAPASSIK 262
           PK GRL+PL    P  +P SSIK
Sbjct: 408 PKVGRLFPLFLPVPDFSPRSSIK 430


>tr|A5BQ40|A5BQ40_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024134 PE=4 SV=1
          Length = 432

 Score = 33.5 bits (75), Expect(2) = 0.044
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +3

Query: 60  LVPGLKKNLISVSKLTDNGIIIKFMREGC 146
           L P L  NLISVS+L DN   I F   GC
Sbjct: 344 LAPQLSMNLISVSQLVDNNCAINFSGNGC 372



 Score = 26.2 bits (56), Expect(2) = 0.044
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 194 PKTGRLYPLGDSSPAHAPASSIK 262
           PK GRL+PL    P  +P SSI+
Sbjct: 387 PKVGRLFPLFLPVPDFSPLSSIR 409


>tr|A5AGK3|A5AGK3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017889 PE=4 SV=1
          Length = 1576

 Score = 31.6 bits (70), Expect(2) = 0.069
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 60  LVPGLKKNLISVSKLTDNGIIIKFMREGC 146
           L P L  NLISV +L DN   + F   GC
Sbjct: 558 LAPQLSTNLISVGQLVDNNCAVNFSGNGC 586



 Score = 27.3 bits (59), Expect(2) = 0.069
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 194 PKTGRLYPLGDSSPAHAPASSIK 262
           PK GRL+PL    P  +P SSIK
Sbjct: 601 PKVGRLFPLFLPIPDFSPXSSIK 623


>tr|A5ADY5|A5ADY5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031057 PE=4 SV=1
          Length = 1303

 Score = 31.6 bits (70), Expect(2) = 0.070
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 60  LVPGLKKNLISVSKLTDNGIIIKFMREGC 146
           L P L  NLISV +L DN   + F   GC
Sbjct: 536 LAPQLSTNLISVGQLVDNNCAVNFSGNGC 564



 Score = 27.3 bits (59), Expect(2) = 0.070
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 194 PKTGRLYPLGDSSPAHAPASSIK 262
           PK GRL+PL    P  +P SSIK
Sbjct: 579 PKVGRLFPLFLPVPDFSPRSSIK 601


>tr|A5BNN7|A5BNN7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041689 PE=4 SV=1
          Length = 845

 Score = 31.6 bits (70), Expect(2) = 0.072
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 60  LVPGLKKNLISVSKLTDNGIIIKFMREGC 146
           L P L  NLISV +L DN   + F   GC
Sbjct: 393 LAPQLSTNLISVGQLVDNNCAVNFSGNGC 421



 Score = 27.3 bits (59), Expect(2) = 0.072
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 194 PKTGRLYPLGDSSPAHAPASSIK 262
           PK GRL+PL    P  +P SSIK
Sbjct: 436 PKVGRLFPLFLPIPDFSPRSSIK 458


>tr|A5BM82|A5BM82_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038695 PE=4 SV=1
          Length = 1069

 Score = 31.2 bits (69), Expect(2) = 0.091
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 45  YFSPILVPGLKKNLISVSKLTDNGIIIKFMREGC 146
           +    L P +  NLISV +L DN   + F   GC
Sbjct: 346 FIDVFLAPQISTNLISVGQLVDNNCAVNFSGNGC 379



 Score = 27.3 bits (59), Expect(2) = 0.091
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 194 PKTGRLYPLGDSSPAHAPASSIK 262
           PK GRL+PL    P  +P SSIK
Sbjct: 394 PKVGRLFPLFLPVPNFSPLSSIK 416


>tr|Q2QZX3|Q2QZX3_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g44530 PE=4 SV=1
          Length = 1407

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 57  ILVPGLKKNLISVSKLTDNGIIIKFMREGCHILH*TKMVSMSHFW 191
           + VP +K+NL+SVS+L ++G    F    C I+H  K V ++  W
Sbjct: 383 LYVPSMKRNLVSVSRLDNDGYYCTFGNNRCIIMHDNKEVGLAVGW 427


>tr|A5BZE3|A5BZE3_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_033373 PE=4 SV=1
          Length = 2116

 Score = 29.3 bits (64), Expect(2) = 0.32
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 60   LVPGLKKNLISVSKLTDNGIIIKFMREGC 146
            L P L   LISV +L DN   + F   GC
Sbjct: 1178 LAPQLSTTLISVGQLVDNNCAVNFSGNGC 1206



 Score = 27.3 bits (59), Expect(2) = 0.32
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 194  PKTGRLYPLGDSSPAHAPASSIK 262
            PK GRL+PL    P  +P SSIK
Sbjct: 1221 PKVGRLFPLFLPVPNFSPLSSIK 1243


>tr|A5BIK7|A5BIK7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_025093 PE=4 SV=1
          Length = 1023

 Score = 29.3 bits (64), Expect(2) = 0.42
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 60  LVPGLKKNLISVSKLTDNGIIIKFMREGC 146
           L P L  NLI V +L DN   + F   GC
Sbjct: 312 LAPQLSTNLIFVGQLVDNNCAVNFSGNGC 340



 Score = 26.9 bits (58), Expect(2) = 0.42
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 194 PKTGRLYPLGDSSPAHAPASSIK 262
           PK GRL+PL    P  +P SSIK
Sbjct: 355 PKVGRLFPLFLPIPDFSPFSSIK 377


>tr|A5B1F1|A5B1F1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034230 PE=4 SV=1
          Length = 546

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +3

Query: 60  LVPGLKKNLISVSKLTDNGIIIKFMREGCHILH*TKMVSMSHFWSPKLGVFIHWVTHRLH 239
           L P L  NLISV +L DN  ++ F   GC +    K      F    LG     +T+ L 
Sbjct: 302 LAPQLSTNLISVGQLVDNNCVVNFSGNGCVVQDQLKTHLSESFHMKDLGS----LTYFLG 357

Query: 240 MHLHH 254
           + +HH
Sbjct: 358 LEVHH 362