BP917100 |
Clone id |
YMU001_000095_H06 |
Library |
YMU01 |
Length |
514 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000095_H06. |
Accession |
BP917100 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GCTGTCCCCCGGGGCAGAGAGGATATGCAGACTTTGCACAGCAGACATTGAGAGTGAGGA GCATTTTGTGTGCAGATGTAGAGCATATGAGGGGATCAGAGGCAGATATCCGACTTTGTT TGCATATCGGCCCACCTTACACCAGATTCTTCAGTCTAGAGACCAGCAACTTTTCGGCCG CTTCCTCATAGAGGCACAGCAGGACCGGGACTCTCTCCTTCAGACATCATCAGTCGTGAG AGACGAGCGCCAAACACAAATTTCTTCCAGAGAGGCACAGTAGCACCACCATCCCAGACG ACTCAGAGAGGAGTGACTCTACAGCAGGCTGAGGAGGTCCGAGCTCGCAGACGTCCACGC CCCCATGGGCGTAGGGCACTCCGACTTTACCAGAGAGAGATCCAGGAGATCCAAGAGCGC TACTACAGATCTCTAGAGGAGAGACGCATCCGAGATTTTGCAGATCCAACCGCCATCCTA CGGGGATTGTTCACACCTTACCCACCCATGCATC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9WVG9 |
Definition |
sp|Q9WVG9|MS3L1_MOUSE Male-specific lethal 3 homolog OS=Mus musculus |
Align length |
76 |
Score (bit) |
33.9 |
E-value |
0.45 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A2CEC7 |
Definition |
tr|A2CEC7|A2CEC7_DANRE Novel protein similar to Down syndrome cell adhesion molecule (Dscam) (Fragment) OS=Danio rerio |
Align length |
105 |
Score (bit) |
35.0 |
E-value |
2.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917100|Adiantum capillus-veneris mRNA, clone: YMU001_000095_H06. (514 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A2CEC7|A2CEC7_DANRE Novel protein similar to Down syndrome ce... 35 2.1 tr|Q5YTK7|Q5YTK7_NOCFA Putative shikimate kinase OS=Nocardia far... 35 2.8 tr|Q5RJQ2|Q5RJQ2_RAT Male-specific lethal-3 homolog 1 (Drosophil... 34 4.8 tr|B1AUJ8|B1AUJ8_MOUSE Male-specific lethal-3 homolog 1 OS=Mus m... 34 4.8 tr|B1AUJ7|B1AUJ7_MOUSE Male-specific lethal-3 homolog 1 OS=Mus m... 34 4.8 tr|Q4T208|Q4T208_TETNG Chromosome 7 SCAF10400, whole genome shot... 33 6.2 tr|B8BVS9|B8BVS9_THAPS Predicted protein OS=Thalassiosira pseudo... 33 6.2
>tr|A2CEC7|A2CEC7_DANRE Novel protein similar to Down syndrome cell adhesion molecule (Dscam) (Fragment) OS=Danio rerio GN=CH211-69G13.1-001 PE=4 SV=1 Length = 1904
Score = 35.0 bits (79), Expect = 2.1 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Frame = +3
Query: 132 PPYTRFFSLETSNFSAASS*RHSRTGTLSFRHHQS*ETSAKHKFLPERHSSTTIPDDSER 311 PPY R L N AASS R + TG +S T + + P SE Sbjct: 1788 PPYLRMDFL--LNRGAASSGREA-TGQTCMDPQKSRIT---------KRPALLAPTPSET 1835
Query: 312 SDSTAG*GGPSSQTSTPPWA*GTP-TLPERDPGDPRALLQISRGE 443 S GP S+ + W GT TLP+R+PGD ++S + Sbjct: 1836 PSSALSSSGPPSREAVQQWQPGTASTLPQREPGDLAQAAKLSSSQ 1880
>tr|Q5YTK7|Q5YTK7_NOCFA Putative shikimate kinase OS=Nocardia farcinica GN=aroK PE=4 SV=1 Length = 493
Score = 34.7 bits (78), Expect = 2.8 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3
Query: 210 TLSFRHHQS*ETSAKHKFLPERHSS-TTIPDDSERSDSTAG*GGPSSQTSTPPWA*GTPT 386 T RHH S A + P R +T P ++R D G P + +T A TP Sbjct: 315 TRDARHHASTPGRAPVRRRPRRRRGRSTDPTSTDRRDRATTSGAPPADETTDTTA-STPG 373
Query: 387 LPERDPGDPRALLQISRGETHPRFCRSNRHP 479 P+R P PRA + S T RS R P Sbjct: 374 RPDRSPDRPRA--RRSGDRTRHAAPRSTRAP 402
>tr|Q5RJQ2|Q5RJQ2_RAT Male-specific lethal-3 homolog 1 (Drosophila) OS=Rattus norvegicus GN=Msl3l1 PE=2 SV=1 Length = 466
Score = 33.9 bits (76), Expect = 4.8 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = +3
Query: 243 TSAKHKFLPERHSSTTIPDDSERSDSTAG*GGPSSQTST---PPWA*GTPTLPERDPGDP 413 TS+K FLP + S+TT E + PS+ ST PP G P P+R +P Sbjct: 231 TSSKF-FLPIKESTTTTNRSQEELSPSPPLLNPSTPQSTESQPPT--GEPATPKRRKAEP 287
Query: 414 RALLQISRGETHPRFC 461 AL + R H C Sbjct: 288 EALQSLRRSTRHSTNC 303
>tr|B1AUJ8|B1AUJ8_MOUSE Male-specific lethal-3 homolog 1 OS=Mus musculus GN=Msl31 PE=4 SV=1 Length = 466
Score = 33.9 bits (76), Expect = 4.8 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = +3
Query: 243 TSAKHKFLPERHSSTTIPDDSERSDSTAG*GGPSSQTST---PPWA*GTPTLPERDPGDP 413 TS+K FLP + S+TT E + PS+ ST PP G P P+R +P Sbjct: 231 TSSKF-FLPIKESTTTTNRSQEELSPSPPLLNPSTPQSTESQPPT--GEPATPKRRKAEP 287
Query: 414 RALLQISRGETHPRFC 461 AL + R H C Sbjct: 288 EALQSLRRSTRHSTNC 303
>tr|B1AUJ7|B1AUJ7_MOUSE Male-specific lethal-3 homolog 1 OS=Mus musculus GN=Msl31 PE=4 SV=1 Length = 525
Score = 33.9 bits (76), Expect = 4.8 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = +3
Query: 243 TSAKHKFLPERHSSTTIPDDSERSDSTAG*GGPSSQTST---PPWA*GTPTLPERDPGDP 413 TS+K FLP + S+TT E + PS+ ST PP G P P+R +P Sbjct: 290 TSSKF-FLPIKESTTTTNRSQEELSPSPPLLNPSTPQSTESQPPT--GEPATPKRRKAEP 346
Query: 414 RALLQISRGETHPRFC 461 AL + R H C Sbjct: 347 EALQSLRRSTRHSTNC 362
>tr|Q4T208|Q4T208_TETNG Chromosome 7 SCAF10400, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00008556001 PE=4 SV=1 Length = 781
Score = 33.5 bits (75), Expect = 6.2 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3
Query: 279 SSTTIPDDSERSDSTAG*GGPSSQTSTPPWA*GTPTLPERDPGDPRALLQISRGET--HP 452 SSTT P S S S GG +S + TPP + G+P L G R L + P Sbjct: 556 SSTTPPSSSSSSSSRVDGGGGASLSLTPPSSPGSPGLAASSSGHWRTRLNSFKNNLLGSP 615
Query: 453 RFCR 464 RF R Sbjct: 616 RFHR 619
>tr|B8BVS9|B8BVS9_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_2942 PE=4 SV=1 Length = 1964
Score = 33.5 bits (75), Expect = 6.2 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +3
Query: 276 HSSTTIPDDSERSDSTAG*GGPSSQTSTPPWA*GTPT-LPERDP 404 HSS T S SDS + G PSSQ S P + G PT +P P Sbjct: 28 HSSCTTKPSSAPSDSPSASGAPSSQPSDSPSSSGQPTSMPSDSP 71
Score = 33.5 bits (75), Expect = 6.2 Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 7/93 (7%) Frame = +3
Query: 246 SAKHKFLPERHSSTTIPDDSERSDSTAG*GGPSSQTSTPPWA*GTPT-LPERDP---GDP 413 S K P S ++ S SDS + G PSSQ S P + G PT +P P G P Sbjct: 1866 SGKPSSAPSGSPSRSVEPSSAPSDSPSASGAPSSQPSDSPSSSGQPTSMPSDSPSLSGKP 1925
Query: 414 RALLQISRG---ETHPRFCRSNRHPTGIVHTLP 503 + S E P S HPT + P Sbjct: 1926 SSAPSGSPSHSVEPPPTAIPSTLHPTKVPTVRP 1958
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