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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917060
Clone id YMU001_000095_D07
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTCTCCCTGGTCCCCGCTTTCAACTCTGTACATCGTCGTCCTGAAGCTCCCCTATCGTAT
GCCCTGTGAGTGTACAAGAGATGCCCTTATATAGGCATTGGGGAGAGAATGGTGTGGGTG
ATGAGGACGGGTCTTATTTTACAATTTCAAGGCAATGATGCAAACACCTAATCCTAGGAC
CACTCTCCCCAAGTCTGCACAAGTGAGGGATATACTGTGCAGCCTACTTTCTGCTTCTAG
CCATCTCAAATTTGCTATGCACTCGCCTCCCGATGGCTCAGCTTCAACGAATTCACTCGG
CTTGACTTATGGCCTGCCAAAGGCGATGGAGTACGTTGCGGTGGCCGCAAAGGGCTACTT
GAAGCTGAGCATAGATGAAATGAGCCATCCTGCAATTTTGGCTCTTCCATACTTATATTA
ATGTGAGATAGAGACCTTCCTCCAGTCTGCCAACGGCCTGTGGACAAACTCGATGTAGGA
GGCGACTCATCGCCGATGACAAGAACATTGGTAGGATACTGCAAGCCTTGTCTCATGTGG
AGACACTTATCAGAGGCTGACCTTTGCCAG
■■Homology search results ■■ -
sp_hit_id Q2I6J1
Definition sp|Q2I6J1|SHP2A_DANRE Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2A OS=Danio rerio
Align length 60
Score (bit) 38.5
E-value 0.022
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917060|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_D07.
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2I6J1|SHP2A_DANRE Phosphatidylinositol-3,4,5-trisphosphate 5...    39   0.022
sp|P17763|POLG_DEN1W Genome polyprotein OS=Dengue virus type 1 (...    32   2.1  
sp|P33478|POLG_DEN1S Genome polyprotein OS=Dengue virus type 1 (...    32   2.1  
sp|P27913|POLG_DEN1C Genome polyprotein (Fragment) OS=Dengue vir...    32   2.1  
sp|P27909|POLG_DEN1B Genome polyprotein OS=Dengue virus type 1 (...    32   2.1  
sp|P27912|POLG_DEN1A Genome polyprotein (Fragment) OS=Dengue vir...    32   2.1  
sp|Q5F3L1|KS6A5_CHICK Ribosomal protein S6 kinase alpha-5 OS=Gal...    32   2.7  
sp|Q8NDX1|PSD4_HUMAN PH and SEC7 domain-containing protein 4 OS=...    31   4.6  
sp|Q3IU54|DP2L_NATPD DNA polymerase II large subunit OS=Natronom...    31   4.6  
sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoid...    27   5.2  
sp|Q9NJG9|SUZ12_DROME Polycomb protein Su(z)12 OS=Drosophila mel...    30   6.0  
sp|Q80ZI6|LRSM1_MOUSE E3 ubiquitin-protein ligase LRSAM1 OS=Mus ...    30   6.0  
sp|Q3UWW6|GA2L3_MOUSE GAS2-like protein 3 OS=Mus musculus GN=Gas...    30   6.0  
sp|Q3UJU9|RMD3_MOUSE Regulator of microtubule dynamics protein 3...    30   6.1  
sp|P34535|YNC2_CAEEL LMBR1 domain-containing protein R05D3.2 OS=...    30   7.9  

>sp|Q2I6J1|SHP2A_DANRE Phosphatidylinositol-3,4,5-trisphosphate
            5-phosphatase 2A OS=Danio rerio GN=inppl1a PE=2 SV=1
          Length = 1266

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = -2

Query: 497  IGDESPPTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHLCSASSSPLRPPQRTPSPL 318
            +G   PP+ S + GRWQT GRS+  I+   EE   +D    +    S    PP   P PL
Sbjct: 999  VGKSKPPSGSSAQGRWQTSGRSVRPIS---EEGSSEDDGNIVPHTGSLNRPPPDFPPPPL 1055


>sp|P17763|POLG_DEN1W Genome polyprotein OS=Dengue virus type 1
           (strain Nauru/West Pac/1974) PE=3 SV=2
          Length = 3392

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 249 LRWLEAESRLHSISLTCADLGRVVLGLGVCIIA 151
           L WL   SR  S+S+TC  +G V L LGV + A
Sbjct: 743 LTWLGLNSRSTSLSMTCIAVGMVTLYLGVMVQA 775


>sp|P33478|POLG_DEN1S Genome polyprotein OS=Dengue virus type 1
           (strain Singapore/S275/1990) PE=3 SV=1
          Length = 3396

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 249 LRWLEAESRLHSISLTCADLGRVVLGLGVCIIA 151
           L WL   SR  S+S+TC  +G V L LGV + A
Sbjct: 742 LTWLGLNSRSTSLSMTCIAVGMVTLYLGVMVQA 774


>sp|P27913|POLG_DEN1C Genome polyprotein (Fragment) OS=Dengue virus
           type 1 (strain Jamaica/CV1636/1977) PE=3 SV=1
          Length = 791

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 249 LRWLEAESRLHSISLTCADLGRVVLGLGVCIIA 151
           L WL   SR  S+S+TC  +G V L LGV + A
Sbjct: 743 LTWLGLNSRSTSLSMTCIAVGMVTLYLGVMVQA 775


>sp|P27909|POLG_DEN1B Genome polyprotein OS=Dengue virus type 1
           (strain Brazil/97-11/1997) PE=3 SV=2
          Length = 3392

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 249 LRWLEAESRLHSISLTCADLGRVVLGLGVCIIA 151
           L WL   SR  S+S+TC  +G V L LGV + A
Sbjct: 743 LTWLGLNSRSTSLSMTCIAVGMVTLYLGVMVQA 775


>sp|P27912|POLG_DEN1A Genome polyprotein (Fragment) OS=Dengue virus
           type 1 (strain Thailand/AHF 82-80/1980) PE=3 SV=1
          Length = 792

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 249 LRWLEAESRLHSISLTCADLGRVVLGLGVCIIA 151
           L WL   SR  S+S+TC  +G V L LGV + A
Sbjct: 743 LTWLGLNSRSTSLSMTCIAVGMVTLYLGVMVQA 775


>sp|Q5F3L1|KS6A5_CHICK Ribosomal protein S6 kinase alpha-5 OS=Gallus
           gallus GN=RPS6KA5 PE=2 SV=1
          Length = 789

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 497 IGDESPPTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHLC 369
           +GDE P T++++            H  + ++E  L +GSF +C
Sbjct: 388 VGDERPGTTTIARSAMMKDSPFFQHYELDLKEKPLGEGSFSIC 430


>sp|Q8NDX1|PSD4_HUMAN PH and SEC7 domain-containing protein 4
           OS=Homo sapiens GN=PSD4 PE=2 SV=2
          Length = 1056

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -2

Query: 479 PTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHL----CSASSSPLRPPQRTPSPLAG 312
           P +SLS   WQ GG     + ++ ++   ++G        C+ +  P R P  +P P + 
Sbjct: 390 PWASLSPEGWQRGGPFWPQVTLNSQDRDEREGGHPQESLPCTLAPCPWRSPASSPEPSSP 449

Query: 311 HKSSR 297
              SR
Sbjct: 450 ESESR 454


>sp|Q3IU54|DP2L_NATPD DNA polymerase II large subunit
           OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
           GN=polC PE=3 SV=1
          Length = 1198

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +2

Query: 185 LPKSAQVRDILCSLLSASSHLKFAMHSPPDGSASTNSLGLTYGLPKAMEYVAVAAKGY 358
           +P+S  VR+ L  LL   +  +  + + PD      SLGLT GL +  + ++ AA+ Y
Sbjct: 557 VPRSEPVREALEVLLVEHTQGEETL-TVPDAEPLVRSLGLTEGLERTWDELSTAARSY 613


>sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoideum
            GN=mybP PE=3 SV=1
          Length = 1448

 Score = 27.3 bits (59), Expect(2) = 5.2
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -2

Query: 503  LVIGDESPPTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHLCSASSSPLRPPQRTP 327
            L+    S PT+   T R QT   + + I++S + P+L   S    S+SS   +PP  +P
Sbjct: 1286 LLATSNSVPTTPRLTTREQTIMATTASIHLSPKSPQLSSSS---PSSSSQQQQPPPSSP 1341



 Score = 20.8 bits (42), Expect(2) = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 252  NLRWLEAESRLHSISL 205
            NLRW E E  L +I++
Sbjct: 1362 NLRWTEHERELFNIAV 1377
tr_hit_id B7ZVH1
Definition tr|B7ZVH1|B7ZVH1_DANRE Wu:fc58a04 OS=Danio rerio
Align length 59
Score (bit) 37.4
E-value 0.54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917060|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_D07.
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZVH1|B7ZVH1_DANRE Wu:fc58a04 OS=Danio rerio GN=wu:fc58a04 P...    37   0.54 
tr|Q4T4E0|Q4T4E0_TETNG Chromosome undetermined SCAF9695, whole g...    35   2.0  
tr|A4TFZ6|A4TFZ6_MYCGI Putative uncharacterized protein OS=Mycob...    34   4.6  
tr|A3VVC3|A3VVC3_9PROT Putative uncharacterized protein OS=Parvu...    34   6.0  
tr|Q4RK46|Q4RK46_TETNG Chromosome 2 SCAF15032, whole genome shot...    33   7.8  
tr|B4QE54|B4QE54_DROSI GD25311 OS=Drosophila simulans GN=GD25311...    33   7.8  
tr|B4HPR3|B4HPR3_DROSE GM19819 OS=Drosophila sechellia GN=GM1981...    33   7.8  

>tr|B7ZVH1|B7ZVH1_DANRE Wu:fc58a04 OS=Danio rerio GN=wu:fc58a04 PE=2
            SV=1
          Length = 1266

 Score = 37.4 bits (85), Expect = 0.54
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = -2

Query: 497  IGDESPPTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHLCSASSSPLRPPQRTPSP 321
            +G   PP+ S + GRWQT GRS+  I+   EE   +D   ++   + S  RPP   P P
Sbjct: 999  VGKSKPPSGSSAQGRWQTSGRSVRPIS---EEGSSEDDG-NIGPHTGSLNRPPPDFPPP 1053


>tr|Q4T4E0|Q4T4E0_TETNG Chromosome undetermined SCAF9695, whole genome
            shotgun sequence OS=Tetraodon nigroviridis
            GN=GSTENG00007367001 PE=4 SV=1
          Length = 1222

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 26/91 (28%), Positives = 38/91 (41%)
 Frame = -2

Query: 530  QGLQYPTNVLVIGDESPPTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHLCSASSSP 351
            QG +YP  +L     S   SS  TG   TGG    H +++ +      G+ H  S S+  
Sbjct: 965  QGEEYPP-LLTFFSSSCCVSSAGTGGSTTGGSRSHHHSLAKQGYHSNHGNHHHHSPSTQH 1023

Query: 350  LRPPQRTPSPLAGHKSSRVNSLKLSHREASA 258
              PP    S ++ H  S     K   R+ S+
Sbjct: 1024 GHPPSHVSSSVSAHSLSIQEGRKRGRRKRSS 1054


>tr|A4TFZ6|A4TFZ6_MYCGI Putative uncharacterized protein
           OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_5493
           PE=4 SV=1
          Length = 326

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 137 FYNFKAMMQTPNPRTTLPKSAQVRDILCSLLSASSHLKFAMHSPPDGSASTNS 295
           FY+  A++        L  SA VRDI+ S L  S+HL    H  PDG  + ++
Sbjct: 223 FYDIWALLGHDLVTELLADSAMVRDIVASALDVSAHLDNPDHPVPDGGFAASA 275


>tr|A3VVC3|A3VVC3_9PROT Putative uncharacterized protein
           OS=Parvularcula bermudensis HTCC2503 GN=PB2503_13514
           PE=4 SV=1
          Length = 810

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +2

Query: 173 PRTTLPKSAQVRDILCSLLSASSHLKFAMHSPPDGSASTNSLGLTYGLPKAMEYVAVAAK 352
           P + L K+A+ RD    LLS + H     HSP  G A++   G   G+  A  +V     
Sbjct: 377 PLSVLTKTAERRDHCPVLLSPTLHCTHTAHSPQYGEAASAWSGFRSGVVSAFAFVESFGL 436

Query: 353 GYLKLSIDEMSH-PAILALP 409
           G     +  +SH  A  ALP
Sbjct: 437 GAGASILKALSHRKAAPALP 456


>tr|Q4RK46|Q4RK46_TETNG Chromosome 2 SCAF15032, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00033141001
           PE=4 SV=1
          Length = 1337

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = -2

Query: 536 MRQGLQYPTNV-LVIGDESPPTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHLCSAS 360
           ++ GL+ PT V + I      + S+  G +        +I  S  + + QD   H C AS
Sbjct: 394 IKDGLKSPTKVPMQITRHQSSSDSVDNGVYD-------NILCSPRKQRRQD---HHCDAS 443

Query: 359 SSPLRPPQRTPSPLAGHKSSRVNSLKLSHREASA*QI*DG*KQKVGCTVYPSLVQ 195
            S  R P   P PL G  +S +      +   +A Q       K+ CT+  S +Q
Sbjct: 444 RSDRRSPSPPPPPLPGRTTSLLLRTNFDNLTKTAGQAQSSSTGKISCTIPLSSLQ 498


>tr|B4QE54|B4QE54_DROSI GD25311 OS=Drosophila simulans GN=GD25311
           PE=4 SV=1
          Length = 815

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -2

Query: 485 SPPTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHLCSASSSPLRPPQRTPSPLAGH 309
           +P T+ LS   ++T G++ S +++  +EP     + +  S +++  +PP   P P A H
Sbjct: 610 TPTTAQLSAPSFKTSGKNGSELDVVEQEPSQPHNNGNANSNTTTTEQPPPAPPQPPAHH 668


>tr|B4HPR3|B4HPR3_DROSE GM19819 OS=Drosophila sechellia GN=GM19819
           PE=4 SV=1
          Length = 814

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -2

Query: 485 SPPTSSLSTGRWQTGGRSLSHINISMEEPKLQDGSFHLCSASSSPLRPPQRTPSPLAGH 309
           +P T+ LS   ++T G++ S +++  +EP     + +  S +++  +PP   P P A H
Sbjct: 610 TPTTAQLSAPSFKTSGKNGSELDVVEQEPSQPHNNGNANSNTTTTEQPPPAPPQPPAHH 668