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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917017
Clone id YMU001_000094_G05
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTTAATCGTTGAGGTTATCCAAACTGGAAAGATACAGTACAAATAATCACGCATTTAATA
TGATGACAACATGAATTTATGACTATCTGATGCTCATAATCATGTCAATCCAGACATAGC
TGAAGGCTTCCATGATCATGTGGTGGAGTTCAGCGGGGTTGAGAAGAAGGTAGCAGTTTA
GAAGCTCCTCCATATCCTCCTCCACATCTCCCTTCTCGATCATCATCTCATACATGGACT
CACTGAAGTCTACCTCCGGATTCGCGGACACCTTCTCGATTGCCACACTGTTTGCTGGCA
ACTTGGCTACTCCAAGGCGTGCGCCAATGCCTTTTGGTTCTGCCTCTGTCATTGACATGG
TTTCTCCCTCCTTGCCATTAATCATGCAACCATTCAGAGAGCTGCAAGAGCTAGCTGCCT
TGCTGGTGTAAAATGCATTTCCTGTACTAATCAGGCTGCTTG
■■Homology search results ■■ -
sp_hit_id O34969
Definition sp|O34969|YFJR_BACSU Uncharacterized oxidoreductase yfjR OS=Bacillus subtilis
Align length 78
Score (bit) 36.6
E-value 0.053
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917017|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_G05.
         (462 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O34969|YFJR_BACSU Uncharacterized oxidoreductase yfjR OS=Baci...    37   0.053
sp|Q5YSC8|RBFA_NOCFA Ribosome-binding factor A OS=Nocardia farci...    32   1.7  
sp|P73971|AMPA_SYNY3 Probable cytosol aminopeptidase OS=Synechoc...    31   2.9  
sp|Q6PAV8|MACD2_XENLA MACRO domain-containing protein 2 OS=Xenop...    30   5.0  
sp|Q9PIM1|LPXA_CAMJE Acyl-[acyl-carrier-protein]--UDP-N-acetylgl...    29   8.5  
sp|A8FK63|LPXA_CAMJ8 Acyl-[acyl-carrier-protein]--UDP-N-acetylgl...    29   8.5  
sp|Q9PGU4|DPO3A_XYLFA DNA polymerase III subunit alpha OS=Xylell...    29   8.5  

>sp|O34969|YFJR_BACSU Uncharacterized oxidoreductase yfjR
           OS=Bacillus subtilis GN=yfjR PE=3 SV=1
          Length = 261

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -3

Query: 403 SSLNGCMINGKEGETMSMTEAEPKGIGARLGVAKLPANSVAIEKVSAN-PEVDFSESMYE 227
           S+L G  +    G  M+  + EP G    LG+        A ++VSAN P  + ++S +E
Sbjct: 182 SALFGSPVYQNYGTIMAEQKFEPAGFKMSLGLKDTNLALAAAKRVSANLPLAELAKSHFE 241

Query: 226 MMIEKGDVEEDMEELLNC 173
             IEKG  + D   L+ C
Sbjct: 242 SGIEKGFGDLDWAALIKC 259


>sp|Q5YSC8|RBFA_NOCFA Ribosome-binding factor A OS=Nocardia
           farcinica GN=rbfA PE=3 SV=1
          Length = 147

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/63 (38%), Positives = 33/63 (52%)
 Frame = -3

Query: 367 GETMSMTEAEPKGIGARLGVAKLPANSVAIEKVSANPEVDFSESMYEMMIEKGDVEEDME 188
           GET+   +AEP    A  G+AK  A  V   KV A   V F+ S+  ++ +  D   +ME
Sbjct: 56  GETI---DAEPDYDAAAAGLAK--AKGVLRSKVGAGTGVKFTPSLAFVLDKVPDAAREME 110

Query: 187 ELL 179
           ELL
Sbjct: 111 ELL 113


>sp|P73971|AMPA_SYNY3 Probable cytosol aminopeptidase
           OS=Synechocystis sp. (strain PCC 6803) GN=pepA PE=3 SV=2
          Length = 492

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 376 GKEGETMSMTEAEPKGIGARLGVAK---LPANSVAIEKVSANP 257
           G E E +  TE E  G+GA LGVAK   LP   + +    ANP
Sbjct: 208 GLELEVLGQTECEALGMGAFLGVAKASELPPQFIHLTYRPANP 250


>sp|Q6PAV8|MACD2_XENLA MACRO domain-containing protein 2 OS=Xenopus
           laevis GN=macrod2 PE=2 SV=1
          Length = 418

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 20/89 (22%), Positives = 33/89 (37%)
 Frame = -3

Query: 448 STGNAFYTSKAASSCSSLNGCMINGKEGETMSMTEAEPKGIGARLGVAKLPANSVAIEKV 269
           S    +   +A  +   +    +   EG  +S    +P   G  L  AK+       EK+
Sbjct: 284 SPDEEYSAEEATGNTQDMTAMSLETNEGNDVSSPATDPLKEGEELSEAKITG-----EKI 338

Query: 268 SANPEVDFSESMYEMMIEKGDVEEDMEEL 182
           S  P+    E     + EK   +ED E +
Sbjct: 339 SVEPKTPEPEDAKMTVEEKSQEQEDSENM 367


>sp|Q9PIM1|LPXA_CAMJE
           Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
           O-acyltransferase OS=Campylobacter jejuni GN=lpxA PE=3
           SV=1
          Length = 263

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = -3

Query: 391 GCMINGKEGETMSMTE---AEPKGIGARLGVAKLPANSVAIEKVSANPEVDFSESMYEMM 221
           GCMI G    +  +     AE    G R  +  L  N V I +     EVD     ++ +
Sbjct: 165 GCMIAGASALSQDIVPFCLAE----GNRASIRSL--NLVGIRRRFDKDEVDRLSRAFKTL 218

Query: 220 IEKGDVEEDMEELLNCYLLLNPAELHHMIME 128
             +GD++E+ + LL      N  ++ H I+E
Sbjct: 219 FRQGDLKENAKNLLENQESENVKKMCHFILE 249


>sp|A8FK63|LPXA_CAMJ8
           Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
           O-acyltransferase OS=Campylobacter jejuni subsp. jejuni
           serotype O:6 (strain 81116 / NCTC 11828) GN=lpxA PE=3
           SV=1
          Length = 263

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = -3

Query: 391 GCMINGKEGETMSMTE---AEPKGIGARLGVAKLPANSVAIEKVSANPEVDFSESMYEMM 221
           GCMI G    +  +     AE    G R  +  L  N V I +     EVD     ++ +
Sbjct: 165 GCMIAGASALSQDIVPFCLAE----GNRASIRSL--NLVGIRRRFDKDEVDRLSRAFKTL 218

Query: 220 IEKGDVEEDMEELLNCYLLLNPAELHHMIME 128
             +GD++E+ + LL      N  ++ H I+E
Sbjct: 219 FRQGDLKENAKNLLENQESENVKKMCHFILE 249


>sp|Q9PGU4|DPO3A_XYLFA DNA polymerase III subunit alpha OS=Xylella
           fastidiosa GN=dnaE PE=3 SV=2
          Length = 1193

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -3

Query: 310 VAKLPANSVAIEKVSANPEVDFSESMYEMMIEKGDVEEDMEELLN 176
           +AKL  N++ I    A  E + +++    +I++   EED++ELLN
Sbjct: 469 IAKLIPNTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLN 513
tr_hit_id A7QDF8
Definition tr|A7QDF8|A7QDF8_VITVI Chromosome chr10 scaffold_81, whole genome shotgun sequence OS=Vitis vinifera
Align length 86
Score (bit) 62.4
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917017|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_G05.
         (462 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QDF8|A7QDF8_VITVI Chromosome chr10 scaffold_81, whole genom...    62   1e-08
tr|A7PP66|A7PP66_VITVI Chromosome chr8 scaffold_23, whole genome...    61   2e-08
tr|Q75GN7|Q75GN7_ORYSJ Os05g0477200 protein OS=Oryza sativa subs...    60   4e-08
tr|Q5JN79|Q5JN79_ORYSJ cDNA clone:002-105-A08, full insert seque...    60   4e-08
tr|Q0JI54|Q0JI54_ORYSJ Os01g0823500 protein (Fragment) OS=Oryza ...    60   4e-08
tr|A3B536|A3B536_ORYSJ cDNA, clone: J075112L03, full insert sequ...    60   4e-08
tr|A2Y5R3|A2Y5R3_ORYSI Putative uncharacterized protein OS=Oryza...    60   4e-08
tr|A2WWH4|A2WWH4_ORYSI Putative uncharacterized protein OS=Oryza...    60   4e-08
tr|B7FMT7|B7FMT7_MEDTR Putative uncharacterized protein OS=Medic...    60   5e-08
tr|B4FIR1|B4FIR1_MAIZE Putative uncharacterized protein OS=Zea m...    60   5e-08
tr|A7NY20|A7NY20_VITVI Chromosome chr6 scaffold_3, whole genome ...    60   5e-08
tr|A7NTE3|A7NTE3_VITVI Chromosome chr18 scaffold_1, whole genome...    60   7e-08
tr|B6U561|B6U561_MAIZE Plant-specific domain TIGR01568 family pr...    59   9e-08
tr|B3TFC9|B3TFC9_TOBAC Ovate-like protein OS=Nicotiana tabacum P...    59   9e-08
tr|B6U5V3|B6U5V3_MAIZE Plant-specific domain TIGR01568 family pr...    59   1e-07
tr|Q8GSM4|Q8GSM4_SOLLC Ovate protein OS=Solanum lycopersicum PE=...    58   2e-07
tr|Q5W6T7|Q5W6T7_ORYSJ Os05g0324600 protein OS=Oryza sativa subs...    58   2e-07
tr|B8AWM6|B8AWM6_ORYSI Putative uncharacterized protein OS=Oryza...    58   2e-07
tr|A9XLG0|A9XLG0_SOLBU Putative uncharacterized protein OS=Solan...    58   2e-07
tr|Q9LVL4|Q9LVL4_ARATH Gb|AAB63094.1 (Ovate family protein) OS=A...    58   3e-07
tr|O04351|O04351_ARATH Putative uncharacterized protein At2g3040...    58   3e-07
tr|A9RTP7|A9RTP7_PHYPA Predicted protein OS=Physcomitrella paten...    58   3e-07
tr|A9XLE0|A9XLE0_CAPFR Putative uncharacterized protein OS=Capsi...    57   3e-07
tr|A7QFM0|A7QFM0_VITVI Chromosome chr8 scaffold_88, whole genome...    57   5e-07
tr|A7PUX7|A7PUX7_VITVI Chromosome chr4 scaffold_32, whole genome...    57   5e-07
tr|A5BUJ4|A5BUJ4_VITVI Putative uncharacterized protein OS=Vitis...    57   5e-07
tr|A9SC83|A9SC83_PHYPA Predicted protein OS=Physcomitrella paten...    57   6e-07
tr|A9RG43|A9RG43_PHYPA Predicted protein OS=Physcomitrella paten...    56   8e-07
tr|Q7XIV5|Q7XIV5_ORYSJ Os07g0679200 protein OS=Oryza sativa subs...    56   1e-06
tr|B8B655|B8B655_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06

>tr|A7QDF8|A7QDF8_VITVI Chromosome chr10 scaffold_81, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035823001
           PE=4 SV=1
          Length = 337

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = -3

Query: 364 ETMSMTEAEPKGIGARLGVAKLPANSVAIEKVSANPEVDFSESMYEMMIEKGDVE-EDME 188
           E M       K I  R+   +    S A+ K S +P+ DF +SM EM++EKG  + E++E
Sbjct: 233 EDMKAKMKMKKKIEERILEGRTQIESFAVVKSSLDPQKDFRDSMIEMIMEKGISQPEELE 292

Query: 187 ELLNCYLLLNPAELHHMIMEAFSYVW 110
           ELL CYL LN  E H +I++ F  VW
Sbjct: 293 ELLACYLTLNSDEYHDLIIKVFRQVW 318


>tr|A7PP66|A7PP66_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021531001
           PE=4 SV=1
          Length = 252

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
 Frame = -3

Query: 427 TSKAASSCSSLNGCMINGKEGETM-----------SMTEAEPKGIGARLGVAKLPANSVA 281
           T +++SS     GC  +  +  T            S T+ E K      G  ++   S+A
Sbjct: 47  TYRSSSSSWEKGGCSTDQDDTTTTFSPNVGTSSDYSETDYEAKSSKKVRGFGRIGGESMA 106

Query: 280 IEKVSANPEVDFSESMYEMMIEKGDV-EEDMEELLNCYLLLNPAELHHMIMEAFSYVW 110
           +EK S +P +DF  SM +M++EK    ++D+ ELLNC+L LN    H +I+ AF+ +W
Sbjct: 107 VEKDSDDPYLDFRHSMLQMILEKEIYSKDDLRELLNCFLQLNSPYYHGVIVRAFTEIW 164


>tr|Q75GN7|Q75GN7_ORYSJ Os05g0477200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0018K15.2 PE=4 SV=1
          Length = 472

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = -3

Query: 295 ANSVAIEKVSANPEVDFSESMYEMMIEKGDVEE-DMEELLNCYLLLNPAELHHMIMEAFS 119
           A+S A+ K S++P  DF ESM EM+ E G  +  D+E+LL CYL LN  E H +I+E F 
Sbjct: 399 AHSFAVVKTSSDPRRDFLESMEEMIAENGIRDAGDLEDLLACYLSLNSGEYHDLIVEVFE 458

Query: 118 YVW 110
            VW
Sbjct: 459 QVW 461


>tr|Q5JN79|Q5JN79_ORYSJ cDNA clone:002-105-A08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0031D02.16 PE=2 SV=1
          Length = 379

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = -3

Query: 295 ANSVAIEKVSANPEVDFSESMYEMMIEKG-DVEEDMEELLNCYLLLNPAELHHMIMEAFS 119
           A S A+ K S +P  DF ESM EM+ E G     D+E+LL CYL LN AE H +I++ F 
Sbjct: 309 AESFAVVKSSRDPRRDFRESMEEMIAENGIRTAADLEDLLACYLSLNAAEYHDLIVDVFE 368

Query: 118 YVW 110
           ++W
Sbjct: 369 HIW 371


>tr|Q0JI54|Q0JI54_ORYSJ Os01g0823500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0823500 PE=4 SV=1
          Length = 385

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = -3

Query: 295 ANSVAIEKVSANPEVDFSESMYEMMIEKG-DVEEDMEELLNCYLLLNPAELHHMIMEAFS 119
           A S A+ K S +P  DF ESM EM+ E G     D+E+LL CYL LN AE H +I++ F 
Sbjct: 315 AESFAVVKSSRDPRRDFRESMEEMIAENGIRTAADLEDLLACYLSLNAAEYHDLIVDVFE 374

Query: 118 YVW 110
           ++W
Sbjct: 375 HIW 377


>tr|A3B536|A3B536_ORYSJ cDNA, clone: J075112L03, full insert
           sequence OS=Oryza sativa subsp. japonica GN=OsJ_018158
           PE=2 SV=1
          Length = 384

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = -3

Query: 295 ANSVAIEKVSANPEVDFSESMYEMMIEKGDVEE-DMEELLNCYLLLNPAELHHMIMEAFS 119
           A+S A+ K S++P  DF ESM EM+ E G  +  D+E+LL CYL LN  E H +I+E F 
Sbjct: 311 AHSFAVVKTSSDPRRDFLESMEEMIAENGIRDAGDLEDLLACYLSLNSGEYHDLIVEVFE 370

Query: 118 YVW 110
            VW
Sbjct: 371 QVW 373


>tr|A2Y5R3|A2Y5R3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20338 PE=4 SV=1
          Length = 384

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = -3

Query: 295 ANSVAIEKVSANPEVDFSESMYEMMIEKGDVEE-DMEELLNCYLLLNPAELHHMIMEAFS 119
           A+S A+ K S++P  DF ESM EM+ E G  +  D+E+LL CYL LN  E H +I+E F 
Sbjct: 311 AHSFAVVKTSSDPRRDFLESMEEMIAENGIRDAGDLEDLLACYLSLNSGEYHDLIVEVFE 370

Query: 118 YVW 110
            VW
Sbjct: 371 QVW 373


>tr|A2WWH4|A2WWH4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04254 PE=4 SV=1
          Length = 379

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = -3

Query: 295 ANSVAIEKVSANPEVDFSESMYEMMIEKG-DVEEDMEELLNCYLLLNPAELHHMIMEAFS 119
           A S A+ K S +P  DF ESM EM+ E G     D+E+LL CYL LN AE H +I++ F 
Sbjct: 309 AESFAVVKSSRDPRRDFRESMEEMIAENGIRTAADLEDLLACYLSLNAAEYHDLIVDVFE 368

Query: 118 YVW 110
           ++W
Sbjct: 369 HIW 371


>tr|B7FMT7|B7FMT7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 206

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = -3

Query: 295 ANSVAIEKVSANPEVDFSESMYEMMIEKG-DVEEDMEELLNCYLLLNPAELHHMIMEAFS 119
           + S+AI K S NP+ DF ESM EM++E      +D+E+LL CYL LN  E H +I++ F 
Sbjct: 137 SGSLAIVKSSFNPQKDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHDLIIKVFK 196

Query: 118 YVW 110
            +W
Sbjct: 197 QIW 199


>tr|B4FIR1|B4FIR1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 366

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = -3

Query: 295 ANSVAIEKVSANPEVDFSESMYEMMIEKG-DVEEDMEELLNCYLLLNPAELHHMIMEAFS 119
           A S A+ K SA+P  DF ESM EM+ EKG     D+E+LL CYL LN  E H +I+E F 
Sbjct: 286 AESFAVVKSSADPRRDFRESMEEMIAEKGIRGAADLEDLLACYLALNADEHHDLIVEVFE 345

Query: 118 YVW 110
            +W
Sbjct: 346 EIW 348